(25 intermediate revisions by 6 users not shown) | |||
Line 1: | Line 1: | ||
{{Alverno_CA}} | {{Alverno_CA}} | ||
<html> | <html> | ||
+ | <script src="http://wayou.github.io/SlipHover/js/jquery.sliphover.min.js"> | ||
+ | </script> | ||
+ | <style type="text/css"> | ||
+ | #container{ | ||
+ | width: 750px; | ||
+ | margin: 0 auto; | ||
+ | text-align:center; | ||
+ | } | ||
+ | #container img{ | ||
+ | margin:10px 10px 0px 0px; | ||
+ | float: left; | ||
+ | } | ||
+ | #container div{ | ||
+ | width: 650px; | ||
+ | overflow: hidden; | ||
+ | } | ||
+ | #container ul li{ | ||
+ | list-style: none; | ||
+ | } | ||
+ | .sliphover-container{ | ||
+ | z-index:99; | ||
+ | } | ||
+ | #menuContainer{ | ||
+ | top:0px; | ||
+ | margin-top:0px; | ||
+ | position:absolute; | ||
+ | } | ||
+ | #top_nav_bulge{ | ||
+ | top:110px; | ||
+ | } | ||
+ | </style> | ||
− | <head> | + | <head> |
<title>Alverno iGEM 2016</title> | <title>Alverno iGEM 2016</title> | ||
− | <link rel="icon" href="https:// | + | <link rel="icon" href="https://static.igem.org/mediawiki/2016/thumb/5/58/T--Alverno_CA--Alverno_iGEM_2016_Logo.png/600px-T--Alverno_CA--Alverno_iGEM_2016_Logo.png"> |
</head> | </head> | ||
<body> | <body> | ||
− | < | + | <br> |
− | < | + | <br> |
− | < | + | <h2><center>Notebook</center></h2> |
− | < | + | <center> |
+ | <img class="icons"src="https://static.igem.org/mediawiki/2016/a/ac/T--Alverno_CA--labnotbook.jpg" style= width:500px> | ||
+ | <center> | ||
− | <h3 | + | <h3>Week of June 6th (Limited amount of notes taken)</h3> |
+ | <h5>- Lots of Designing Parts and Primers</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of June 13th:</h3> |
+ | <h5>- Cleaning Restriction Digest and Ligation Done</h5> | ||
+ | <h5>- Ampicillin plates made</h5> | ||
+ | <h5>- Ampicillin stock made</h5> | ||
+ | <h5>- Transform RFP plasmid</h5> | ||
+ | <h5>- Design Parts and Primers</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of June 20th</h3> |
+ | <h5>- Transformation Done (probably GFP)</h5> | ||
+ | <h5>- RFP and GRP colonies</h5> | ||
+ | <h5>- PCR for RFP Coding Gene</h5> | ||
+ | <h5>- Design Parts and Primers</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3>< | + | <h3>Week of June 27th</h3> |
+ | <h5>- PCR Done for promoters, terminators, some UC parts</h5> | ||
+ | <h5>- Primer Dilutions Done</h5> | ||
+ | <h5>- Gel Run with PCR product from Week of June 20th (RFP)</h5> | ||
+ | <h5>- Miniprep kit for RFP Bba</h5> | ||
+ | <h5>- TBE Buffer 10x and 1x made</h5> | ||
+ | <h5>- PCR Purification done on Promoters and Terminators</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of July 4th</h3> |
+ | <h5>- PCR of Vectors, some UC parts</h5> | ||
+ | <h5>- Primer Dilutions</h5> | ||
+ | <h5>- Gel Run UC16-18 and UC2 (UC18 ran twice)</h5> | ||
+ | <h5>- PCR Clean Up done for UC16-18, vectors, T3-T4 (terminators), UC2 (UC18 done twice)</h5> | ||
+ | <h5>- Plate Reader</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of July 11th</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/4/44/T--Alverno_CA--Screenshot_2016-10-15_09.24.58.png" alt="iGEM" style="max-width:100%; max-height:100%"> | ||
+ | <h5>- Learn how to use Benchling</h5> | ||
+ | <h5>- Primers Diluted</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/a/ad/T--Alverno_CA--Screenshot_2016-10-15_09.05.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Parts Diluted</h5> | ||
+ | <h5>- PCR done on P1ab, P2ab, T3ab, T4ab</h5> | ||
+ | <h5>- Gel Run on P1ab, P2ab, T3ab, T4ab</h5> | ||
+ | <h5>- PCR Clean up done on P1ab, P2ab, T3ab, T4ab</h5> | ||
+ | <h5>- Chloramphenicol plates made</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of July 18th</h3> |
+ | <h5>- UCLA iGEM meetup (UCLA, ULV, UCSD, and Marburg Teams)</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/d/d5/T--Alverno_CA--Screenshot_2016-10-15_09.05.53.png" alt="iGEM" style="width:30%; height:30%"> | ||
+ | <h5>- Golden Gate Assembly Done with P1ab, P2ab, P3, P4, T1, T2, T3ab, T4ab, UC2, V2d</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/5/5d/T--Alverno_CA--Screenshot_2016-10-15_09.06.03.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Transformation Done</h5> | ||
+ | <h5>- Chloramphenicol plates made</h5> | ||
+ | <h5>- Parts dilutions Done</h5> | ||
+ | <h5>- PCR of GG Assemblies</h5> | ||
+ | <h5>- PCR of UC3a-UC9a</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3>< | + | <h3>Week of July 25th</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/4/4f/T--Alverno_CA--Screenshot_2016-10-15_09.06.12.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Set up Plate reader</h5> | ||
+ | <h5>- Run Gel UC3a-UC9a & GG1-8, V1a & V2a, GG Parts</h5> | ||
+ | <h5>- PCR Purification of UC3-9, V1a & V2a</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/d/d9/T--Alverno_CA--Screenshot_2016-10-15_09.06.21.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Picked Colonies</h5> | ||
+ | <h5>- Transformation Protocol for GG1-8</h5> | ||
+ | <h5>- Gel made & Gel made w/ SYBR safe</h5> | ||
+ | <h5>- PCR of GG Assemblies</h5> | ||
+ | <h5>- PCR for V1a and V2a, UC7-9</h5> | ||
+ | <h5>- Dilutions Done</h5> | ||
+ | <h5>- Gel Run for UC7-9</h5> | ||
+ | <h5>- Golden Gate Assembly GG9-16</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of August 1st</h3> |
+ | <h5>- Run Gel for UC7-9 & (GG9-16 Done twice) & GG17-19 & GG20-23</h5> | ||
+ | <h5>- PCR of GFP & RFP w/ varying UTRs & RFP chlor. GFP chlor. Kan GG12</h5> | ||
+ | <h5>- PCR Purification for UC7-8</h5> | ||
+ | <h5>- Parts Dilutions done UC2 & UC3-6 & UC7-8</h5> | ||
+ | <h5>- PCR Check for GG9-16 (Done twice) & GG17-19 & GG20-23</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/d/d6/T--Alverno_CA--Screenshot_2016-10-15_09.06.31.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Fixed Thermocycler</h5> | ||
+ | <h5>- Gels Made</h5> | ||
+ | <h5>- Agar Plates made w/ Kan</h5> | ||
+ | <h5>- Golden Gate Assembly GG17-19 & GG20-23 & GG24-26</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/c/c2/T--Alverno_CA--Screenshot_2016-10-15_09.06.45.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Transformation with GG12</h5> | ||
+ | <h5>- Ludox Calibration</h5> | ||
+ | <h5>- Test Fluorescence of Plasmids</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of August 8th</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/5/53/T--Alverno_CA--Screenshot_2016-10-15_09.06.52.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Cell Measurement</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/0/0e/T--Alverno_CA--Screenshot_2016-10-15_09.07.03.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Run Gel for GG24-26 & 24A-E, 25A-E, 26A-E, 27-28 PCR</h5> | ||
+ | <h5>- PCR Check for GG24-26 & GG27-28</h5> | ||
+ | <h5>- Made Gel</h5> | ||
+ | <h5>- Transformation with GG24-26 & GG27-28</h5> | ||
+ | <h5>- Golden Gate Assembly GG27-28</h5> | ||
+ | <h5>- Colony PCR Check of GG24-26</h5> | ||
+ | <h5>- Primer Dilutions</h5> | ||
+ | <h5>- Plasmid DNA Purification</h5> | ||
+ | <h5>- LB Kan Broth</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of August 15th</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/5/5c/T--Alverno_CA--Screenshot_2016-10-15_09.07.17.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Lab Meet-up with UCL/LC/CV</h5> | ||
+ | <h5>- Colony PCR Check for GG libraries 27-28</h5> | ||
+ | <h5>- Gels Made</h5> | ||
+ | <h5>- Gel Run for GG Library 28</h5> | ||
+ | <h5>- Grow Cultures GG27</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/0/0c/T--Alverno_CA--Screenshot_2016-10-15_09.07.26.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Learn Python</h5> | ||
+ | <h5>- Check Fluorescence for GG28 & GG27</h5> | ||
+ | <h5>- PCR UC14a</h5> | ||
+ | <h5>- Purification of Plasmid DNA</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of August 22nd</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/a/ad/T--Alverno_CA--Screenshot_2016-10-15_09.07.34.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Gel Run for GG27 & UC13-15 UC13-15 and UC1 & GG29-36</h5> | ||
+ | <h5>- Gels Made</h5> | ||
+ | <h5>- PCR UC13a and UC15a (Done twice) & UC1</h5> | ||
+ | <h5>- PCR Purification of UC14 & UC13/15 & UC1</h5> | ||
+ | <h5>- Golden Gate Assembly for GG29-36</h5> | ||
+ | <h5>- PCR Check for GG29-36</h5> | ||
+ | <h5>- LB Kan Broth Made</h5> | ||
+ | <h5>- Dilution of UC1</h5> | ||
+ | <h5>- Control run in Plate Reader</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/6/69/T--Alverno_CA--Screenshot_2016-10-15_09.07.46.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3>< | + | <h3>Week of August 29th</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/9/9b/T--Alverno_CA--Screenshot_2016-10-15_09.07.54.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Make Gels</h5> | ||
+ | <h5>- Run Gel for UC13-UC15 & GG29-36 and CDS1a & CDS2a</h5> | ||
+ | <h5>- Golden Gate Assembly GG37-52 & GG53-60</h5> | ||
+ | <h5>- PCR Check GG37-52 & GG53-60</h5> | ||
+ | <h5>- PCR Check Gel run for GG37-52</h5> | ||
+ | <h5>- PCR CDS1a & CDS2a</h5> | ||
+ | <h5>- PCR Purification of CDS1a & CDS2a</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/d/d7/T--Alverno_CA--Screenshot_2016-10-15_09.08.02.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Talk with iGEM Peshawar</h5> | ||
+ | <h5>- LB Kan Plates Made</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of September 5th</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/a/ae/T--Alverno_CA--Screenshot_2016-10-15_09.08.11.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- iGEM Team Meeting</h5> | ||
+ | <h5>- PCR Purification of CDS1a & CDS2a and UC1</h5> | ||
+ | <h5>- Transformation was done with GG53-60</h5> | ||
+ | <h5>- Gel Run for CDS1 & CDS2 and UC1 (done 3 times) and GG61-64</h5> | ||
+ | <h5>- Gels made</h5> | ||
+ | <h5>- Dilution of CDS1a & CDS2a</h5> | ||
+ | <h5>- Golden Gate Assembly GG61-64</h5> | ||
+ | <h5>- PCR of UC1</h5> | ||
+ | <h5>- LB Kan Plates Made</h5> | ||
+ | <h5>- PCR Check for GG61-64</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/c/c1/T--Alverno_CA--Screenshot_2016-10-15_09.08.20.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- TBE 10x Buffer</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of September 12th</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/f/f2/T--Alverno_CA--Screenshot_2016-10-15_09.08.27.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Talked with UCL iGEM Team</h5> | ||
+ | <h5>- LV-LC-CV meet-up</h5> | ||
+ | <h5>- Google Hangouts with Lambert Georgia iGEM team</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/c/c1/T--Alverno_CA--Screenshot_2016-10-15_09.08.35.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Dilution of UC1a</h5> | ||
+ | <h5>- Transformation of GG29-36</h5> | ||
+ | <h5>- Golden Gate Assembly GG65-72</h5> | ||
+ | <h5>- PCR GG61-64</h5> | ||
+ | <h5>- PCR Check GG61-64</h5> | ||
+ | <h5>- TX-TL of GFP (+ control)</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/0/04/T--Alverno_CA--Screenshot_2016-10-15_09.08.42.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Outreach workshop with Middle school</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3 | + | <h3>Week of September 19th</h3> |
+ | <h5>- REVIEW OF EVERYTHING THAT NEEDS TO BE DONE BEFORE GOING TO JAMBOREE</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/4/4a/T--Alverno_CA--Screenshot_2016-10-15_09.08.50.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Run Gel for GG61-64 (done twice) and GG65-72</h5> | ||
+ | <h5>- LB Kan Plates Made</h5> | ||
+ | <h5>- Gels Made</h5> | ||
+ | <h5>- TX-TL GFP Re-run</h5> | ||
+ | <h5>- Gel Run for UC1 and GG61-64</h5> | ||
+ | <h5>- Control Test ran using only the ladder for Gels</h5> | ||
+ | <h5>- TX-TL W & M plasmids</h5> | ||
+ | <h5>- PCR U3a</h5> | ||
+ | <h5>- Dilution of Primers</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/3/3f/T--Alverno_CA--Screenshot_2016-10-15_09.09.01.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3>< | + | <h3>Week of September 26th</h3> |
+ | <h5>- PCR Purification of V3a</h5> | ||
+ | <h5>- Golden Gate Assembly GG73-74 and GG75-82 and GG83-90 and GG91-94</h5> | ||
+ | <h5>- PCR Check GG73-74 and GG75-82</h5> | ||
+ | <h5>- Dilution V3a</h5> | ||
+ | <h5>- Run Gel V3a</h5> | ||
+ | <h5>- Transformation of GG61-64 (done twice) and GG65-72 and GG73-74</h5> | ||
+ | <h5>- TX-TL re-run for W & M plasmids</h5> | ||
+ | <h5>- Colony PCR GG61-64 and GG65-72</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/c/c6/T--Alverno_CA--Screenshot_2016-10-15_09.09.08.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- LB Chloramphenicol plates & LB Kanamycin plates</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/6/65/T--Alverno_CA--Screenshot_2016-10-15_09.09.17.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3>< | + | <h3>Week of October 3rd</h3> |
+ | <img src="https://static.igem.org/mediawiki/2016/5/50/T--Alverno_CA--Screenshot_2016-10-15_09.09.24.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Middle School Visit</h5> | ||
+ | <h5>- LB Broth made</h5> | ||
+ | <h5>- PCR P1a-P4a & T1a-T4a & P1ab &P2ab & T3ab & T4ab</h5> | ||
+ | <h5>- Dilution V3a</h5> | ||
+ | <h5>- PCR Check GG83-90</h5> | ||
+ | <h5>- PCR Purification P1a-P4a & T1a-T4a & P1ab &P2ab & T3ab & T4ab</h5> | ||
+ | <h5>- TX-TL re-run for W & M plasmids w/ Replicates</h5> | ||
+ | <h5>- Gels Made</h5> | ||
+ | <h5>- Mini prep GG28 1-5</h5> | ||
+ | <h5>- Make TBE 1x</h5> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/9/99/T--Alverno_CA--Screenshot_2016-10-15_09.09.30.png" alt="iGEM" style="width:20%; height:20%"> | ||
+ | <h5>- Gel Run P1a-P4a, T1a-T4a, P1ab, P2ab, T3ab, T4ab & GG95-102</h5> | ||
+ | <h5>- Primers Diluted</h5> | ||
+ | <h5>- Golden Gate GG103 & GG104 & GG85-102 & GG105-112</h5> | ||
+ | <h5>- Transformation GG95-102 (done twice)</h5> | ||
+ | <h5>- Testing Fluorescence on GG28 1-5 w/ Plate Reader</h5> | ||
+ | <h5>- Wiki Work</h5> | ||
− | <h3>< | + | <h3>Week of October 10th</h3> |
+ | <h5>- Golden Gate GG113-114</h5> | ||
+ | <h5>- Transformation GG103 & 104, GG105-112</h5> | ||
+ | <h5>- LB Chloramphenicol plates made</h5> | ||
+ | <h5>- PCR Purification of UC13a-UC15a</h5> | ||
+ | <h5>- Transformation done GG113-114</h5> | ||
+ | <h5>- LB Broth Made</h5> | ||
+ | <h5>- Mini Prep GG95 (1)-GG102 (3)</h5> | ||
+ | <h5>- Dilute Primers</h5> | ||
+ | <h5>- Test Fluorescence of GG95-102_1-3 & GG105-108_1-4 (by TX-TL)</h5> | ||
+ | <h5>- Purification of Plasmid DNA GG95-102_1-3 & GG105-108_1-4</h5> | ||
− | <h3>< | + | <h3>Week of October 17th</h3> |
+ | <h5>- WIKI WORK!!!</h5> | ||
+ | </body> | ||
− | |||
− | < | + | <script> |
+ | $("#container").sliphover(); | ||
+ | $(".sliphover-container").css('z-index','99'); | ||
+ | $("#menuContainer").css('z-index','99'); | ||
+ | </script> | ||
− | + | </html> | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + |
Latest revision as of 03:49, 20 October 2016