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                                 <p class="black">Our project was inspired by the UCLA’s projects presented at iGEM in 2014 and 2015 about synthetic silks. Like we said above, silks are very interesting material but one of the main problems is dealing with its high content of Cytosine and Guanine. Most of the expression systems are not able to deal with that, however we have known Chlamydomonas reinhardtii has naturally high CG content which makes it interesting as an expression chassis. One of UCLA’s projects was called Silk Functionalization: Developing the Next Generation of  Performance Fibers. The team has created a genetic construct using the Green Fluorescent Protein (GFP) inserted between N- and C- terminal domains of Bombyx mori’s silk to express proteins able to bind to native silk proteins. When this customized GFPs and native proteins were mixed and spun they were able to recognize each other by the terminal domains, making a fluorescent silk.</p>  
 
                                 <p class="black">Our project was inspired by the UCLA’s projects presented at iGEM in 2014 and 2015 about synthetic silks. Like we said above, silks are very interesting material but one of the main problems is dealing with its high content of Cytosine and Guanine. Most of the expression systems are not able to deal with that, however we have known Chlamydomonas reinhardtii has naturally high CG content which makes it interesting as an expression chassis. One of UCLA’s projects was called Silk Functionalization: Developing the Next Generation of  Performance Fibers. The team has created a genetic construct using the Green Fluorescent Protein (GFP) inserted between N- and C- terminal domains of Bombyx mori’s silk to express proteins able to bind to native silk proteins. When this customized GFPs and native proteins were mixed and spun they were able to recognize each other by the terminal domains, making a fluorescent silk.</p>  
 
  
 
                                 <p class="black">From this idea we thought: “Silk is a very interesting material and could be expressed in Chlamydomonas reinhardtii, a model organism that has many advantages and that remains underexplored. What could be put in place of a GFP to express in microalgae? What biomolecule could take advantage of this amazing silk feature? It has to work while immobilized... Why not enzymes? There are many studies about enzymes immobilization, enzymes are very appropriate and useful in many applications around the world!”. But we knew it could not to be any enzyme linked to silk, we knew it need to address technical, social and economic issues. So we read that spider silk has been studied to many biomedical applications, like the treatment of burn victims. Then we studied about burns in order to find an interesting enzyme that could solve some problem and we learned that one of the most important problems affecting burn victims is sepsis. In this way, we sought for antimicrobial enzymes and we found the endolysins. Endolysins are very interesting enzymes because they are able to combat multiresistant bacterias and they are specific, avoiding problems like the antibiotic resistance.</p>  
 
                                 <p class="black">From this idea we thought: “Silk is a very interesting material and could be expressed in Chlamydomonas reinhardtii, a model organism that has many advantages and that remains underexplored. What could be put in place of a GFP to express in microalgae? What biomolecule could take advantage of this amazing silk feature? It has to work while immobilized... Why not enzymes? There are many studies about enzymes immobilization, enzymes are very appropriate and useful in many applications around the world!”. But we knew it could not to be any enzyme linked to silk, we knew it need to address technical, social and economic issues. So we read that spider silk has been studied to many biomedical applications, like the treatment of burn victims. Then we studied about burns in order to find an interesting enzyme that could solve some problem and we learned that one of the most important problems affecting burn victims is sepsis. In this way, we sought for antimicrobial enzymes and we found the endolysins. Endolysins are very interesting enzymes because they are able to combat multiresistant bacterias and they are specific, avoiding problems like the antibiotic resistance.</p>  
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                                 <p class="black">So we decided to make a project about spider silk production in microalgae, creating possibilities to future works with silk proteins from this amazing organism model, like the association between them and endolysins by UCLA’s approach in order to make an antimicrobial silk to be applied on burn victims to combat sepsis.</p>
 
                                 <p class="black">So we decided to make a project about spider silk production in microalgae, creating possibilities to future works with silk proteins from this amazing organism model, like the association between them and endolysins by UCLA’s approach in order to make an antimicrobial silk to be applied on burn victims to combat sepsis.</p>
  
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<p class=black><strong>References:</strong></p>
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<p class="black">Eichler-Stahlberg, Alke et al. “Strategies to Facilitate Transgene Expression in Chlamydomonas Reinhardtii.” Planta 229.4 (2009): 873–883. Print.</p>
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<p class="black">Fuhrmann, Markus et al. “A Synthetic Gene Coding for the Green Fluorescent Protein (GFP) Is a Versatile Reporter in Chlamydomonas Reinhardtii.” The Plant journal: for cell and molecular biology 19.3 (1999): 353–361. Print.</p>
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<p class="black">Lewis, Randolph V. “Spider Silk: Ancient Ideas for New Biomaterials.” Chemical reviews 106.9 (2006): 3762–3774. Print.</p>
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<p class="black">Lumbreras, Victoria et al. “Efficient Foreign Gene Expression in Chlamydomonas Reinhardtii Mediated by an Endogenous Intron.” The Plant journal: for cell and molecular biology 14.4 (1998): 441–447. Print.</p>
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<p class="black">Mayfield, S. P., S. E. Franklin, and R. A. Lerner. “Expression and Assembly of a Fully Active Antibody in Algae.” Proceedings of the National Academy of Sciences 100.2 (2003): 438–442. Print.</p>
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<p class="black">Mayfield, Stephen P. et al. “Chlamydomonas Reinhardtii Chloroplasts as Protein Factories.” Current opinion in biotechnology 18.2 (2007): 126–133. Print.</p>
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<p class="black">Rasala, Beth A. et al. “Robust Expression and Secretion of Xylanase1 in Chlamydomonas Reinhardtii by Fusion to a Selection Gene and Processing with the FMDV 2A Peptide.” PloS one 7.8 (2012): e43349. Print.</p>
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<p class="black">Rosenberg, Julian N. et al. “A Green Light for Engineered Algae: Redirecting Metabolism to Fuel a Biotechnology Revolution.” Current opinion in biotechnology 19.5 (2008): 430–436. Print.</p>
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<p class="black">Schroda, M., D. Blöcker, and C. F. Beck. “The HSP70A Promoter as a Tool for the Improved Expression of Transgenes in Chlamydomonas.” The Plant journal: for cell and molecular biology 21.2 (2000): 121–131. Print.</p>
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<p class="black">Wijffels, René H., Olaf Kruse, and Klaas J. Hellingwerf. “Potential of Industrial Biotechnology with Cyanobacteria and Eukaryotic Microalgae.” Current opinion in biotechnology 24.3 (2013): 405–413. Print.</p>
 
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<p class="black">In our project, we propose to explore the modular characteristic of spider silk proteins, by using it as an immobilization support to other proteins. We were inspired by UCLA’s iGEM Team’s project in 2014 and 2015, where they presented the idea of using silk fibers to integrate other functional proteins to the silk’s structure. We tried to expand on this concept by expressing proteins with antimicrobial activity, enzybiotics (Fig.1). By combining these proteins and their properties, we tried to tackle a major problem with wound dressings for burn victims.</p>
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<p class="fig-label">Figure 1: Schematic representation of spider silk proteins and chimeric protein. A: MaSp1 - Major ampullate spidroin 1, MaSp2 - Major ampullate spidroin 2 B: Chimeric protein of a enzybiotic with N and C terminals domains of spider silk proteins.</p>
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<p class="black">We tried to express the recombinant proteins, spider silk proteins and enzybiotics in the microalgae Chlamydomonas reinhardtii strains by nuclear transformation. Each recombinant strain would express a different protein, which would contain the N- and C-terminal polymerization domains from native spider silk proteins. These domains are essential to the polymerization step and, subsequently, for production of a material very similar to silk. Having been able to build our design, the antimicrobial activity and mechanical properties of the product would be evaluated, as well as the system productivity, shedding some light on spider silk-based immobilization support effectiveness, even for other biotechnological applications, such as the one idealized here. However, there are other possible applications with economic and academic interest.</p>
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<p class="fig-label">Figure 2: Project overview. Schematic representation of spider web structure from macro to nano scale. A representation of: enzybiotic protein from a bacteriophage; a spider silk protein with repetitive domains and N and C terminals; host expression system Chlamydomonas reinhardtii and a chimeric protein envisioned in this project; and the final product, a biopatch produced from recombinant silk proteins and chimeric proteins.</p>
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<p class="black">Microalgae present various desirable characteristics in an expression system: fast growth, fast making of stable transgenic lineages, scalability and low production cost, for example ​(Wijffels 2013, Rosenberg 2008)​. Unlike bacterial expression systems, microalgae are capable of producing and secreting complex proteins with post-transcriptional modifications. Mammalian cells also wouldn’t be an optimal expression system when considering production costs. Molecules such as monoclonal antibodies (mAbs) are mainly produced in these cells and their average production cost in this system is estimated to be $ 150.00 per gram of raw materials (Dove 2002), but the estimated value for algae reaches US $ 0.002 per liter, making them potential competitors (Mayfield et al. 2003). Another problem with spider silk expression is the G-C rich content of its sequences, often clogging the heterologous expression of this kind of protein in non-GC-rich systems (Yang et al. 2016). But Chlamydomonas reinhardtii presents a GC-rich genome, which may play an important role in spider silk protein expression.</p>
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<p class="black">Immobilization techniques are applied to a wide range of treatments and processes, from medical applications to biotransformations in industrial plants. This stabilization is normally achieved by protein binding to a scaffold (Liese and Hilterhaus 2013). Recent studies explored spider silks as a possible immobilization support (Blüm et al. 2013, Monier 2013).  Spider silk is known mainly for its tensile strength and fracture resistance, but also exhibits elasticity, adhesion, biocompatibility and low degradation. Its strength can be compared to Kevlar synthetic polymer, which is composed of aramid and is used in for manufacturing body armor (Lewis 2006). Furthermore, medical applications are possible due to its biocompatibility and biodegradability, as coating for implants and transplanted organs, drug delivery and scaffolding for cell lines (Lewis 2006, Hardy et al. 2008, Kluge et al. 2008).</p>
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<p class="black">Team:UCLA 2014 iGEM project &lt;https://2014.igem.org/Team:UCLA&gt;</p>
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<p class="black">Team:UCLA 2015 iGEM project &lt;https://2015.igem.org/Team:UCLA&gt;</p>
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<p class="black">Blüm C, Nichtl A, Scheibel T (2013) Spider Silk Capsules as Protective Reaction Containers for Enzymes. Advanced Functional Materials 24 (6): 763-768. DOI: 10.1002/adfm.201302100</p>
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<p class="black">Dove A (2002) Uncorking the biomanufacturing bottleneck. Nature Biotechnology 20 (8): 777-779. DOI: 10.1038/nbt0802-777</p>
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<p class="black">Hardy J, Römer L, Scheibel T (2008) Polymeric materials based on silk proteins. Polymer 49 (20): 4309-4327. DOI: 10.1016/j.polymer.2008.08.006</p>
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<p class="black">Kluge J, Rabotyagova O, Leisk G, Kaplan D (2008) Spider silks and their applications. Trends in Biotechnology 26 (5): 244-251. DOI: 10.1016/j.tibtech.2008.02.006</p>
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<p class="black">Lewis R (2006) Spider Silk: Ancient Ideas for New Biomaterials. Chemical Reviews 106 (9): 3762-3774. DOI: 10.1021/cr010194g</p>
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<p class="black">Liese A, Hilterhaus L (2013) Evaluation of immobilized enzymes for industrial applications. Chemical Society Reviews 42 (15): 6236. DOI: 10.1039/c3cs35511j</p>
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Latest revision as of 18:40, 25 November 2016






DESCRIPTION

EXPERIMENTS

PROOF OF CONCEPT

RESULTS

NOTEBOOK

SAFETY

MODELING

INTEGRATED PRACTICES

HARDWARE

MEASUREMENT

PLANT SYNTHETIC BIOLOGY