Difference between revisions of "Team:Peking/Model"

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        <title>Model</title>
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            <!-- Navigation -->
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<h3>★  ALERT! </h3>
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        <div id="navigation" class="navbar navbar-fixed-top">
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<p>This page is used by the judges to evaluate your team for the <a href="https://2016.igem.org/Judging/Awards#SpecialPrizes">Best Model award</a>. </p>
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                    <div id="logo" style="max-width:170px"><a class="" href="https://2016.igem.org/Team:Peking"></a></div>
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                            <li class="menu-1"><a class="colapse-menu1" href="https://2016.igem.org/Team:Peking" >Home</a></li>
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                            <li class="dropdown menu-2"><a class="dropdown-toggle" data-toggle="dropdown" href="#" > Achievements</a>
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                                <ul class="dropdown-menu">
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                                    <li><a href="https://2016.igem.org/Team:Peking/Results" >Results</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Basic_Part" >Parts</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Collaborations" >Collaborations</a></li>
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                                </ul>
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                            </li>
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                            <li class="dropdown menu-3"><a class="dropdown-toggle" data-toggle="dropdown" href="#">Project</a>
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                                <ul class="dropdown-menu">
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                                    <li><a href="https://2016.igem.org/Team:Peking/Description" >Overview</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Design" >Design</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Crosslinking" >Crosslinking</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Uranyl-adsorption" >Uranyl adsorption</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Clearance" >Clearance</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Secretion" >Secretion</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Demonstrate" >Final Performance</a></li>
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                                </ul>
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                            </li>
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                            <li class="dropdown menu-4"><a class="dropdown-toggle" data-toggle="dropdown" href="#" >Modeling</a>
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                                <ul class="dropdown-menu">
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                                    <li><a href="https://2016.igem.org/Team:Peking/Model/GelPoint" > Model of Gel Point </a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Model/MassDistribution" > Model of Mass Distribution</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/Software" >Software</a></li>
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                                </ul>
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                            </li>
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                            <li class="dropdown menu-5"><a class="dropdown-toggle" data-toggle="dropdown" href="#" >Practices</a>
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                                    <li><a href="https://2016.igem.org/Team:Peking/HP/Gold" >Overview</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/HP/311" >Field research</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/HP/questionnaire" >Questionnaire</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/HP/consulting" >Consulting</a></li>
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                                    <li><a href="https://2016.igem.org/Team:Peking/HP/otherHP" >Education&nbsp;&amp;&nbsp;Other</a></li>
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                                </ul>
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                            </li>
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                            <li class="menu-6"><a class="colapse-menu1" href="https://2016.igem.org/Team:Peking/Safety" >Safety</a>
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                                <li class="dropdown menu-7"><a class="dropdown-toggle" data-toggle="dropdown" href="#" >Lab</a>
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                                        <li><a class="" href="https://2016.igem.org/Team:Peking/Team" >Team</a></li>
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                                        <li><a class="" href="https://2016.igem.org/Team:Peking/Attributions" >Attribution</a></li>
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                                        <li><a class="" href="https://2016.igem.org/Team:Peking/Notebook" >Notebook</a></li>
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                                    </ul>
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                                </li>
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                                <li class="menu-8"><a class="colapse-menu1" href="https://2016.igem.org/Team:Peking/Interlab" >Interlab</a>
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<p> Delete this box in order to be evaluated for this medal. See more information at <a href="https://2016.igem.org/Judging/Pages_for_Awards/Instructions"> Instructions for Pages for awards</a>.</p>
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<h2> Modeling</h2>
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<p>Mathematical models and computer simulations provide a great way to describe the function and operation of BioBrick Parts and Devices. Synthetic Biology is an engineering discipline, and part of engineering is simulation and modeling to determine the behavior of your design before you build it. Designing and simulating can be iterated many times in a computer before moving to the lab. This award is for teams who build a model of their system and use it to inform system design or simulate expected behavior in conjunction with experiments in the wetlab.</p>
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<h5> Inspiration </h5>
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Here are a few examples from previous teams:
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<li><a href="https://2014.igem.org/Team:ETH_Zurich/modeling/overview">ETH Zurich 2014</a></li>
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<li><a href="https://2014.igem.org/Team:Waterloo/Math_Book">Waterloo 2014</a></li>
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                            <h1>Model</h1>
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                            <p class="title1" style="text-align:center">The Peking iGEM team 2016 has set up a model on the basis of the principles of polymer science, to describe the fundamental properties of our bio-materials.</p>
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                                    <p style="text-align:center;"><a href="https://2016.igem.org/Team:Peking/Model/MassDistribution"><img style="width:  %;" src="https://static.igem.org/mediawiki/2016/d/da/T--Peking--images_modelgelpoint.png " alt="" /></p></a>
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                          <p style="font-family:raleway, sans-serif !important; font-weight:100;font-size:18px !important; text-align:justify; margin-top:20px;">The Peking iGEM Team has learned Wallace H. Carothers’s and Paul J. Flory’s methods to predict the gel point of three-dimensional polymerization, and developed the latter as a way to forecast that point of their SpyTag/SpyCatcher crosslinking system. They made it a way to choose the monomers suitable for crosslinking reaction.</p>
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                                    <p style="text-align:center;"><a href="https://2016.igem.org/Team:Peking/Model/MassDistribution"><img style="width:  %;" src="https://static.igem.org/mediawiki/2016/0/0b/T--Peking--image_modelmass.png" /></p></a>
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                                    <p style="font-family:raleway, sans-serif !important; font-weight:100;font-size:18px !important; text-align:justify; margin-top:20px;">The Peking iGEM Team has studied and expanded Paul J. Flory's method to predict the molecular weight distribution of polymer. They compared their reaper’s experimental molecular weight distribution data with the theoretical one and find it is necessary to improve the polymer network's orthogonality with its functional protein. To optimize the reaper's design, they have brought up some compare standards. </p>
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                                    <p style="text-align:center;"><a href="https://2016.igem.org/Team:Peking/Software"><img style="width:  %;" src="https://static.igem.org/mediawiki/2016/f/f1/T--Peking--image_H51.png" alt=""/></p></a>
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                                    <p style="font-family:raleway, sans-serif !important; font-weight:100;font-size:18px !important; text-align:justify; margin-top:20px;">SoP is originally built to help our team members work out molecular weight distribution results more efficiently, at least more efficient than excel. Now for the wish of sharing, the software was published on webpage so that everyone can try our method or even compare it with experiments. Note that this application exclusively uses the formula described in our "Model-Mass Distribution" part.</p>
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Latest revision as of 03:09, 2 December 2016

Model

Model

The Peking iGEM team 2016 has set up a model on the basis of the principles of polymer science, to describe the fundamental properties of our bio-materials.

The Peking iGEM Team has learned Wallace H. Carothers’s and Paul J. Flory’s methods to predict the gel point of three-dimensional polymerization, and developed the latter as a way to forecast that point of their SpyTag/SpyCatcher crosslinking system. They made it a way to choose the monomers suitable for crosslinking reaction.

The Peking iGEM Team has studied and expanded Paul J. Flory's method to predict the molecular weight distribution of polymer. They compared their reaper’s experimental molecular weight distribution data with the theoretical one and find it is necessary to improve the polymer network's orthogonality with its functional protein. To optimize the reaper's design, they have brought up some compare standards.

SoP is originally built to help our team members work out molecular weight distribution results more efficiently, at least more efficient than excel. Now for the wish of sharing, the software was published on webpage so that everyone can try our method or even compare it with experiments. Note that this application exclusively uses the formula described in our "Model-Mass Distribution" part.


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