Difference between revisions of "Team:SDU-Denmark/Notebook"

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<!----------CONTENT--------------------------------->
 
<!----------CONTENT--------------------------------->
<h3><b>Week 26</b></h3>
+
<!-------------------------------------------Week 26 ------------------------------------------------------>
 +
<h4><b>Week 26</b></h4>
 
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/4/45/T--SDU-Denmark--minisilk.png" height="20%" style="margin-right:15px;">Received gBlock, K201843, and resuspend. Date: 16.06.27</button>
 
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/4/45/T--SDU-Denmark--minisilk.png" height="20%" style="margin-right:15px;">Received gBlock, K201843, and resuspend. Date: 16.06.27</button>
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
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5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution.
 
5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution.
 
 
What we have done with the BioBrick <a href="http://parts.igem.org/Part:BBa_K2018043" target="_blank">K2018043</a> can be read in this protocol: <span style="color: #ff0000;">Link to protocol (K2018043 - Cloning Basic part into iGEM standard plasmid psB1C3)</span></span> <p>
+
What we have done with the BioBrick <a href="http://parts.igem.org/Part:BBa_K2018043" target="_blank">K2018043</a> can be read in this protocol: <span style="color: #ff0000;">Link to protocol (</span><span style="font-weight: 400;">K2018043 - Cloning Basic part into iGEM standard plasmid psB1C3</span></span> <p>
  
 
</div>
 
</div>
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</div>
 
</div>
  
<button class="accordion">Received gBlock, K1763002, and resuspended. Date: 16.06.27 - Silk</button>
+
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/4/45/T--SDU-Denmark--minisilk.png" height="20%" style="margin-right:15px;">Received gBlock, K1763002, and resuspended. Date: 16.06.27</button>
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
 
<p>The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O.  
 
<p>The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O.  
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</div>
 
</div>
  
<button class="accordion">Received gBlock, K1763004, and resuspended. Date: 16.06.27 - Silk</button>
+
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/4/45/T--SDU-Denmark--minisilk.png" height="20%" style="margin-right:15px;">Received gBlock, K1763004, and resuspended. Date: 16.06.27</button>
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
 
<p>The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O.  
 
<p>The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O.  
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</div>
 
</div>
  
<button class="accordion">Received gBlock, K1763009, and resuspended. Date: 16.06.27 - Silk</button>
+
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/4/45/T--SDU-Denmark--minisilk.png" height="20%" style="margin-right:15px;">Received gBlock, K1763009, and resuspended. Date: 16.06.27</button>
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
 
<p>The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O.  
 
<p>The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O.  
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</div>
 
</div>
  
<button class="accordion">Received gBlock, K1763012, and resuspended. Date: 16.06.27 - Silk</button>
+
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/4/45/T--SDU-Denmark--minisilk.png" height="20%" style="margin-right:15px;">Received gBlock, K1763012, and resuspended. Date: 16.06.27</button>
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
 
<p>The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O.  
 
<p>The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O.  
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</div>
 
</div>
  
<h3><b>Week 27</b></h3>
+
<!-------------------------------------------Week 27 ------------------------------------------------------>
 +
<h4><b>Week 27</b></h4>
 
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/e/e9/T--SDU-Denmark--minibacto.png" height="20%" style="margin-right:15px;">Received plasmid, K2018011, and transformation into Top10 E. coli. Date: 16.07.05</button>
 
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/e/e9/T--SDU-Denmark--minibacto.png" height="20%" style="margin-right:15px;">Received plasmid, K2018011, and transformation into Top10 E. coli. Date: 16.07.05</button>
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
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</div>
 
</div>
  
 
+
<!-------------------------------------------Week 28 ------------------------------------------------------>
 
+
<h4><b>Week 28</b></h4>
<h3><b>Week 28</b></h3>
+
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/e/e9/T--SDU-Denmark--minibacto.png" height="20%" style="margin-right:15px;">Received plasmid, K2018010, and transformation into Top10 E. coli. Date: 16.07.14</button>
<button class="accordion">Received plasmid, K2018010, and transformation into Top10 E. coli. Date: 16.07.14
+
- Bacto</button>
+
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
 
<p>The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl.  
 
<p>The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl.  
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2.5 µl plasmid was used instead of the normal 1 µl.  
 
2.5 µl plasmid was used instead of the normal 1 µl.  
 
 
What we had done with the BioBrick <a href="http://parts.igem.org/Part:BBa_K2018010" target="_blank">K2018010</a> can be read in this protocol: <span style="color: #ff0000;">Link to protocol (K2018010 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018010)</span></span> <p>
+
What we had done with the BioBrick<a href="http://parts.igem.org/Part:BBa_K2018010" target="_blank">K2018010</a> can be read in this protocol: <span style="color: #ff0000;">Link to protocol (K2018010 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018010)</span></span> <p>
  
 
</div>
 
</div>
  
<button class="accordion">Verification of K2018011 in standard iGEM plasmid (pSB1C3). Date: 16.07.14 -Bacto</button>
+
<button class="accordion">Verification of K2018011 in standard iGEM plasmid (pSB1C3). Date: 16.07.14</button>
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
<p>The BioBrick containing the gene <a href="http://parts.igem.org/Part:BBa_K2018011" target="_blank">K2018011</a> was digested with PstI and XbaI overnight by using SOP0017_v01.<p>
+
<p>The BioBrick containing the gene <a href="http://parts.igem.org/Part:BBa_K2018011" target="_blank">K2018011</a> was digested with PstI and XbaI overnight by using SOP0017_v01.<p>
 
<p>After digesting, the sample was ligated by following SOP0015_v01 with the standard iGEM plasmid, pSB1C3, overnight, and transformed into <em>E.coli Top10</em>.<p>
 
<p>After digesting, the sample was ligated by following SOP0015_v01 with the standard iGEM plasmid, pSB1C3, overnight, and transformed into <em>E.coli Top10</em>.<p>
  
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</div>
 
</div>
  
<button class="accordion">Received plasmid, K2018014, and transformation into Top10 E. coli. Date: 16.07.14
+
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/e/e9/T--SDU-Denmark--minibacto.png" height="20%" style="margin-right:15px;">Received plasmid, K2018014, and transformation into Top10 E. coli. Date: 16.07.14</button>
- Bacto</button>
+
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
 
<p>The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl.  
 
<p>The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl.  
Line 179: Line 178:
 
2.5 µl plasmid was used instead of the normal 1 µl.  
 
2.5 µl plasmid was used instead of the normal 1 µl.  
 
 
What we had done with the BioBrick <a href="http://parts.igem.org/Part:BBa_K2018014" target="_blank">K2018014</a> can be read in this protocol: <span style="color: #ff0000;">Link to protocol (K2018014 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018014)</span></span> <p>
+
What we had done with the BioBrick<a href="http://parts.igem.org/Part:BBa_K2018014" target="_blank">K2018014</a> can be read in this protocol: <span style="color: #ff0000;">Link to protocol (K2018014 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018014)</span></span> <p>
  
 
</div>
 
</div>
  
<button class="accordion">Received plasmid, K2018019, and transformation into Top10 E. coli. Date: 16.07.14
+
<button class="accordion"><img src="https://static.igem.org/mediawiki/2016/e/e9/T--SDU-Denmark--minibacto.png" height="20%" style="margin-right:15px;">Received plasmid, K2018019, and transformation into Top10 E. coli. Date: 16.07.14</button>
- Bacto</button>
+
 
<div id="foo" class="panel">
 
<div id="foo" class="panel">
 
<p>The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl.  
 
<p>The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl.  
Line 191: Line 189:
 
2.5 µl plasmid was used instead of the normal 1 µl.  
 
2.5 µl plasmid was used instead of the normal 1 µl.  
 
 
What we had done with the BioBrick <a href="http://parts.igem.org/Part:BBa_K2018019" target="_blank">K2018019</a> can be read in this protocol: <span style="color: #ff0000;">Link to protocol (K2018019 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018019)</span></span> <p>
+
What we had done with the BioBrick<a href="http://parts.igem.org/Part:BBa_K2018019" target="_blank">K2018019</a> can be read in this protocol: <span style="color: #ff0000;">Link to protocol (K2018019 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018019)</span></span> <p>
  
</div>
 
 
 
<button class="accordion">Week 11</button>
 
<div id="foo" class="panel">
 
  <p>Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.</p>
 
 
</div>
 
</div>
  

Revision as of 19:03, 15 October 2016

Notebook


Week 26

The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O. 5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution. What we have done with the BioBrick K2018043 can be read in this protocol: Link to protocol (K2018043 - Cloning Basic part into iGEM standard plasmid psB1C3

The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O. 5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution. What we have done with the BioBrick K2018044 can be read in this protocol: Link to protocol (K2018044 - Cloning Basic part into iGEM standard plasmid psB1C3)

The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O. 5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution. What we had done with the BioBrick K1763003 can be read in this protocol: Link to protocol (K1763003 - Cloning Basic part into iGEM standard plasmid psB1C3)

The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O. 5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution. What we had done with the BioBrick K1763004 can be read in this protocol: Link to protocol (K1763004 - Cloning Basic part into iGEM standard plasmid psB1C3)

The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O. 5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution. What we had done with the BioBrick K1763009 can be read in this protocol: Link to protocol (K1763009 - Cloning Basic part into iGEM standard plasmid psB1C3)

The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O. 5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution. What we had done with the BioBrick K1763010 can be read in this protocol: Link to protocol (K1763010 - Cloning Basic part into iGEM standard plasmid psB1C3)

The brick was ordered from IDT and received: The received gblock had a weight of 200 ng. and was resuspended in dH2O. 5 µl diluted gblock and 95 µl ddH2O to make a 20X dilution. What we had done with the BioBrick K1763012 can be read in this protocol: Link to protocol (K1763012 - Cloning Basic part into iGEM standard plasmid psB1C3)

Week 27

The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl. After the resuspension, the plasmid was transformed into Top10 E. coli by following SOP0023_v01, with the following remarks: 2.5 µl plasmid was used instead of the normal 1 µl. What we had done with the BioBrick K2018011 can be read in this protocol: Link to protocol (K2018011 - Cloning composite part into iGEM standard plasmid), (Cloning Thuricin with DA silk-overhangs into pSB1C3), (Cloning Thuricin with DE silk-overhangs into pSB1C3), (Cloning Thuricin with EA silk-overhangs into pSB1C3), (Cloning Thuricin with ED silk-overhangs into pSB1C3) and (IMPACT Purification of K2018011)

Week 28

The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl. After the resuspension, the plasmid was transformed into Top10 E. coli by following SOP0023_v01, with the following remarks: 2.5 µl plasmid was used instead of the normal 1 µl. What we had done with the BioBrickK2018010 can be read in this protocol: Link to protocol (K2018010 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018010)

The BioBrick containing the gene K2018011 was digested with PstI and XbaI overnight by using SOP0017_v01.

After digesting, the sample was ligated by following SOP0015_v01 with the standard iGEM plasmid, pSB1C3, overnight, and transformed into E.coli Top10.

cPCR program used:

Segment Step Temperature Duration
1 Initial denaturation 98 °C 2 min
2 34 cycles 98 °C 10 sec
    72 °C 15 sec
    72 °C >15 sec
3 Final extension 72 °C 5 min
4 Keep the sample cold 12 °C HOLD

After a colony PCR, SOP0021_v01, was run and verified on a gel, the following result was given: Our part is 259 bp and primer overhangs are 150 X 2 bp, which is, in total, 559 bp: A gel electrophoresis from cPCR showed a band around 600 bp, so we assumed that we had the correct part inserted into the iGEM standard plasmid.

What we had done with the BioBrick K2018011 can be read in this protocol: Link to protocol (K2018011 - Cloning composite part into iGEM standard plasmid), (Cloning Thuricin with DA silk-overhangs into pSB1C3), (Cloning Thuricin with DE silk-overhangs into pSB1C3), (Cloning Thuricin with EA silk-overhangs into pSB1C3), (Cloning Thuricin with ED silk-overhangs into pSB1C3) and (IMPACT Purification of K2018011)

The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl. After the resuspension, the plasmid was transformed into Top10 E. coli by following SOP0023_v01, with the following remarks: 2.5 µl plasmid was used instead of the normal 1 µl. What we had done with the BioBrickK2018014 can be read in this protocol: Link to protocol (K2018014 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018014)

The BioBrick was ordered from IDT in a plasmid pUCIDT-AMP and after receiving it, it was resuspended to a final concentration of 0.1 µg/µl. After the resuspension, the plasmid was transformed into Top10 E. coli by following SOP0023_v01, with the following remarks: 2.5 µl plasmid was used instead of the normal 1 µl. What we had done with the BioBrickK2018019 can be read in this protocol: Link to protocol (K2018019 - Cloning composite part into iGEM standard plasmid) and (IMPACT Purification of K2018019)