Difference between revisions of "Team:BostonU HW/Notebook/June"

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{{BUHW2016}}
 
{{BUHW2016}}
 
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</div>
 
</div>
  
−
<section id="about">
+
    <section id="about">
 
         <div class="container">
 
         <div class="container">
−
            <div class="row">
+
                <div class="row">
−
                <div class="col-lg-12 text-center">
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                    <div class="col-4">
−
                    <h2 class="section-heading">Week 3: May 30th - June 5th</h2>
+
                        <h1>Week 3</h1>
−
                     <h4 align=left>Created templates to display an svg file
+
                        <h2 class="datesFaded">30 May - 5 June</h2>
−
<br><br>Added functionality to the display by dynamically creating buttons to open and close valves depending on the svg file
+
                     </div>
−
<br><br>Incorporated Ajax to connect to the serial port to connect to an arduino
+
−
<br><br>Used Ajax and post requests to import files from the web-app and save them locally to use for the settings page and the svg image
+
−
<br><br>Ordered parts for the pumps setup
+
−
<br><br>Changed mapper code to differentiate flow from control on an LFR file
+
−
<br><br>Added functionality to mapper to work with the UCF and identify which layer all elements reside in
+
−
<br><br>Implemented control layer in mapper
+
−
</h4>
+
  
−
<br><br>
+
                    <div class="col-8">
−
<h2 class="section-heading">Weeks 4 and 5: June 6th - June 19th</h2><br>
+
                        <br><br/>
−
                    <h4 align=left>Learnt js, css, html, node.js, express framework, and how to set up effective github repositories
+
                        <h4>Created templates to display an svg file
−
<br><br>Did some reading about microfluidics: "Microfluidics for synthetic biology: from design to execution," Ferry MS, Razinkov IA, Hasty J.
+
                        <br><br>Added functionality to the display by dynamically creating buttons to open and close valves depending on the svg file
−
<br><br>Framework switched from Webix based implementation to a more standard implementation w/ hybrid of Javascript, CSS, html
+
                        <br><br>Incorporated Ajax to connect to the serial port to connect to an arduino
 +
                        <br><br>Used Ajax and post requests to import files from the web-app and save them locally to use for the settings page and the svg image
 +
                        <br><br>Ordered parts for the pumps setup
 +
                        <br><br>Changed mapper code to differentiate flow from control on an LFR file
 +
                        <br><br>Added functionality to mapper to work with the UCF and identify which layer all elements reside in
 +
                        <br><br>Implemented control layer in mapper
 +
                        </h4>
 +
                    </div>
 +
                </div>
  
−
<br><br>Assembled the demo board with pump holders and servo holders
+
                <div class="row">
−
<br><br>Wrote an Arduino code that gets the code as an input, and turns on the servo
+
                    <br></br>
−
<br><br>Implemented the display of the SVG graph with buttons to open and close valves
+
                    <hr></hr>
−
<br><br>Added file upload functionality to certain pages
+
                </div>
−
<br><br>Enabled serial communication of valves from the fluigi page to the Arduino
+
−
<br><br>Mapper changed to completely align with place and route with corrected formatting issues and MINT output
+
−
<br><br>Started to integrate mapper into the graphical user interface
+
−
</h4>
+
  
 +
                <div class="row">
 +
                    <div class="col-4">
 +
                        <h1>Weeks 4 & 5</h1>
 +
                        <h2 class="datesFaded">6 June - 19 June</h2>
 +
                    </div>
  
−
<br><br>
+
                    <div class="col-8">
−
<h2 class="section-heading">Week 6: June 20th - June 26th</h2><br>
+
                        <br><br/>
−
                    <h4 align=left>Worked on NEGEM Presentation
+
                        <h4>Learned js, css, html, node.js, express framework, and how to set up effective github repositories
−
<br><br>Embed text editor for MINT within GUI
+
                        <br><br>Did some reading about microfluidics: "Microfluidics for synthetic biology: from design to execution," Ferry MS, Razinkov IA, Hasty J.
−
<br><br>Rearrange entire structure of code
+
                        <br><br>Framework switched from Webix based implementation to a more standard implementation w/ hybrid of Javascript, CSS, html
−
<br><br>Create solidworks designs of pump holders and layout structure
+
                        <br><br>Assembled the demo board with pump holders and servo holders
−
<br><br>Graphical user interface makeover
+
                        <br><br>Wrote an Arduino code that gets the code as an input, and turns on the servo
−
<br><br>Debugging and synchronizing pumps with svg implemented
+
                        <br><br>Implemented the display of the SVG graph with buttons to open and close valves
−
</h4>
+
                        <br><br>Added file upload functionality to certain pages
−
 
+
                        <br><br>Enabled serial communication of valves from the fluigi page to the Arduino
−
<br><br>
+
                        <br><br>Mapper changed to completely align with place and route with corrected formatting issues and MINT output
−
<h2 class="section-heading">Week 7: June 27th - July 3rd</h2><br>
+
                        <br><br>Started to integrate mapper into the graphical user interface
−
                    <h4 align=left>Talked to companies such as Lab Central and Ginkgo Labs for sponsorship
+
                        </h4>
−
<br><br>Had a meeting with the company Nona to talk about open source work for human practices
+
                    </div>
−
<br><br>Worked on iGEM wiki: Page template and setup, Home page, Attributions page, and Team page
+
                </div>
−
</h4>
+
                <div class="row">
−
 
+
                    <br></br>
 +
                    <hr></hr>
 +
                </div>
  
 +
                <div class="row">
 +
                    <div class="col-4">
 +
                        <h1>Week 6</h1>
 +
                        <h2 class="datesFaded">20 June - 26 June</h2>
 +
                    </div>
  
 +
                    <div class="col-8">
 +
                        <br><br/>
 +
                        <h4 align=left>Worked on NEGEM Presentation
 +
                        <br><br>Embed text editor for MINT within GUI
 +
                        <br><br>Rearrange entire structure of code
 +
                        <br><br>Create solidworks designs of pump holders and layout structure
 +
                        <br><br>Graphical user interface makeover
 +
                        <br><br>Debugging and synchronizing pumps with svg implemented
 +
                        </h4>
 +
                    </div>
 +
                </div>
 +
                <div class="row">
 +
                    <br></br>
 +
                    <hr></hr>
 +
                </div>
  
 +
                <div class="row">
 +
                    <div class="col-4">
 +
                        <h1>Week 7</h1>
 +
                        <h2 class="datesFaded">27 June - 3 July</h2>
 +
                    </div>
  
 +
                    <div class="col-8">
 +
                        <br><br/>
 +
                        <h4 align=left>Talked to companies such as Lab Central and Ginkgo Labs for sponsorship
 +
                        <br><br>Had a meeting with the company Nona to talk about open source work for human practices
 +
                        <br><br>Worked on iGEM wiki: Page template and setup, Home page, Attributions page, and Team page
 +
                        </h4>
 +
                    </div>
 
                 </div>
 
                 </div>
−
            </div>
+
        </div>
−
      </div>
+
    </section>
−
  </section>
+
−
 
+
  
  
 
</body>
 
</body>
 +
 +
  
  

Revision as of 15:35, 1 July 2016

Timeline: June

Week 3

30 May - 5 June



Created templates to display an svg file

Added functionality to the display by dynamically creating buttons to open and close valves depending on the svg file

Incorporated Ajax to connect to the serial port to connect to an arduino

Used Ajax and post requests to import files from the web-app and save them locally to use for the settings page and the svg image

Ordered parts for the pumps setup

Changed mapper code to differentiate flow from control on an LFR file

Added functionality to mapper to work with the UCF and identify which layer all elements reside in

Implemented control layer in mapper



Weeks 4 & 5

6 June - 19 June



Learned js, css, html, node.js, express framework, and how to set up effective github repositories

Did some reading about microfluidics: "Microfluidics for synthetic biology: from design to execution," Ferry MS, Razinkov IA, Hasty J.

Framework switched from Webix based implementation to a more standard implementation w/ hybrid of Javascript, CSS, html

Assembled the demo board with pump holders and servo holders

Wrote an Arduino code that gets the code as an input, and turns on the servo

Implemented the display of the SVG graph with buttons to open and close valves

Added file upload functionality to certain pages

Enabled serial communication of valves from the fluigi page to the Arduino

Mapper changed to completely align with place and route with corrected formatting issues and MINT output

Started to integrate mapper into the graphical user interface



Week 6

20 June - 26 June



Worked on NEGEM Presentation

Embed text editor for MINT within GUI

Rearrange entire structure of code

Create solidworks designs of pump holders and layout structure

Graphical user interface makeover

Debugging and synchronizing pumps with svg implemented



Week 7

27 June - 3 July



Talked to companies such as Lab Central and Ginkgo Labs for sponsorship

Had a meeting with the company Nona to talk about open source work for human practices

Worked on iGEM wiki: Page template and setup, Home page, Attributions page, and Team page



Thank you to our sponsors for their support





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