Difference between revisions of "Team:Paris Saclay/Notebook/September/20"

(Created page with "{{Team:Paris_Saclay/notebook_header}} = Tuesday 20<sup>th</sup> September= ==Lab work== ===Visualization=== ====Samples preparation for sequencing==== "By Maxence, Mahnaz &...")
 
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|PCR product 1 obtained by iPS174 & iPS175<div id="PCR product 1 obtained by iPS174 & iPS175"></div>
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|PCR product 2 obtained by iPS173 & iPS176<div id="PCR product 2 obtained by iPS173 & iPS176"></div>
 
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====Gibson of cleaned up PCR products from pSB1C3 with dCas9 ST - GFP 11 (pPS16_017) clone 8 treated by DpnI====
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''By Maxence, Mahnaz, Coline & Caroline''
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Gibson was performed with cleaned up PCR products from pSB1C3 with dCas9 ST - GFP 11 (pPS16_017) clone 8 treated by DpnI, more precisely PCR product 1 obtained by iPS174 & iPS175 (plasmid) and PCR product 2 obtained by iPS173 & iPS176 (insert) with the following protocol:
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For each 20μl of reaction, mix the following reagents :
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* 0.2 µL of insert
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* 3.16 µL of plasmid
 +
* 6.64 µL of water
 +
* 10 µL of buffer mix
 +
 +
Two controls were done: one without insert and one without buffer (water was added in order to have a total of 20 µL). The PCR was performed as follow : 1 hour at 50°C.
  
 
{{Team:Paris_Saclay/notebook_footer}}
 
{{Team:Paris_Saclay/notebook_footer}}

Revision as of 15:50, 19 September 2016

Tuesday 20th September

Lab work

Visualization

Samples preparation for sequencing

"By Maxence, Mahnaz & Coline"

20 µL of plasmids pSB1C3 FKBP - GFP 10 (clones 7, 8, 9 and 10) were sent to be sequenced. 20 µL of the primers iPS84 (5µM) and iPS140 (5µM) were sent for sequencing.

NanoDrop Measurements

"By Maxence, Mahnaz & Coline"

Sample Concentration (ng/µL)
FKBP - GFP 10 clone 7
X
FKBP - GFP 10 clone 8
X
FKBP - GFP 10 clone 9
X
FKBP - GFP 10 clone 10
X
PCR product 1 obtained by iPS174 & iPS175
X
PCR product 2 obtained by iPS173 & iPS176
X

Gibson of cleaned up PCR products from pSB1C3 with dCas9 ST - GFP 11 (pPS16_017) clone 8 treated by DpnI

By Maxence, Mahnaz, Coline & Caroline

Gibson was performed with cleaned up PCR products from pSB1C3 with dCas9 ST - GFP 11 (pPS16_017) clone 8 treated by DpnI, more precisely PCR product 1 obtained by iPS174 & iPS175 (plasmid) and PCR product 2 obtained by iPS173 & iPS176 (insert) with the following protocol:

For each 20μl of reaction, mix the following reagents :

  • 0.2 µL of insert
  • 3.16 µL of plasmid
  • 6.64 µL of water
  • 10 µL of buffer mix

Two controls were done: one without insert and one without buffer (water was added in order to have a total of 20 µL). The PCR was performed as follow : 1 hour at 50°C.