Difference between revisions of "Team:Arizona State/Human Practices"
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<p>The lack of characterization of N-acyl homoserine lactones (AHLs) requires a comprehensive review of the safety of these molecules. The need for increased understanding extends to both the designed "Sender" parts and the AHL molecules themselves. Because quorum sensing is used by a myriad of bacterial species to induce virulence or biofilm formation, among other things, it has many implications towards activating a wide-range of bacteria. Our project aimed to investigate this broad issue by: </p> | <p>The lack of characterization of N-acyl homoserine lactones (AHLs) requires a comprehensive review of the safety of these molecules. The need for increased understanding extends to both the designed "Sender" parts and the AHL molecules themselves. Because quorum sensing is used by a myriad of bacterial species to induce virulence or biofilm formation, among other things, it has many implications towards activating a wide-range of bacteria. Our project aimed to investigate this broad issue by: </p> | ||
<p> 1. Consulting with experts in the field</p> | <p> 1. Consulting with experts in the field</p> | ||
| − | <p> 2. Compiling a list of bacteria (pathogens, soil, water) that may | + | <p> 2. Compiling a list of bacteria (pathogens, soil, water) that may crosstalk with AHLs produced by our Senders</p> |
<p> 3. Designing a AHL safe disposal plan</p> | <p> 3. Designing a AHL safe disposal plan</p> | ||
<p> 4. Writing a report that provides suggestions for future research/use of AHLs. </p> | <p> 4. Writing a report that provides suggestions for future research/use of AHLs. </p> | ||
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<li>GeneWiz checks for protein sequences, but not the products that the proteins create</li> | <li>GeneWiz checks for protein sequences, but not the products that the proteins create</li> | ||
<li>The possibility of AHLs activating pathogens has not been brought up before, but it’s the customer’s responsibility if they are dealing with potentially harmful chemicals/toxins.</li> | <li>The possibility of AHLs activating pathogens has not been brought up before, but it’s the customer’s responsibility if they are dealing with potentially harmful chemicals/toxins.</li> | ||
| − | <li>They check for toxins and strains that are on a list provided by the FBI (the two documents are attached) </li> | + | <li>They check for toxins and strains that are on a list provided by the FBI (the two documents are attached) </li> |
| + | <h2>List of Pathogens that Crosstalk</h2> | ||
| + | <p>According to Davis, Muller, and Haynes, there are over 100 species of bacteria that are known to produce unique AHL inducers. Our concern is that some of these bacteria are pathogenic, and that AHL exposure could cause activation of virulence or biofilm formation, among other consequences. We assembled a list of 14 pathogenic bacteria that may potentially activate due to AHL molecules generated by our Senders. </p> | ||
| + | <center><img src="https://static.igem.org/mediawiki/2016/f/f4/T--Arizona_State--crosstalklist.png"></center> | ||
| + | <p>Some organisms of note include Burkholderia cepacia, which works together with other bacteria to activate Cystic Fibrosis, Nautella sp. R11, which causes bleaching in coral, and Yersinia pestis, which notably caused the Bubonic Plague. </p> | ||
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Revision as of 09:22, 16 October 2016
Human Practices
Description
The lack of characterization of N-acyl homoserine lactones (AHLs) requires a comprehensive review of the safety of these molecules. The need for increased understanding extends to both the designed "Sender" parts and the AHL molecules themselves. Because quorum sensing is used by a myriad of bacterial species to induce virulence or biofilm formation, among other things, it has many implications towards activating a wide-range of bacteria. Our project aimed to investigate this broad issue by:
1. Consulting with experts in the field
2. Compiling a list of bacteria (pathogens, soil, water) that may crosstalk with AHLs produced by our Senders
3. Designing a AHL safe disposal plan
4. Writing a report that provides suggestions for future research/use of AHLs.
Consulting with Experts
Integrated Device Technologies
We contacted Integrated Device Technologies (IDT) to gather information on the possible threats associated with the Sender sequences that our team designed. This response was gathered over email, as shown below:
They asked the following questions in regards to how safe a gene might be:
- Could it be harmful to our lab personnel?
- Would inserting these genes into a different species lead to a new highly pathogenic strain?
- Could an accidental transfer to a different species lead to a highly dangerous pathogen?
GeneWiz
We contacted GeneWiz about the possible impact of AHL molecules on inducing quorum sensing in nature. This was done through an email response and a Skype call. The initial email response is shown below:
From the Skype call, our team aimed to clarify information about the dangers of AHLs. The following points were the biggest takeaways:
- GeneWiz checks for protein sequences, but not the products that the proteins create
- The possibility of AHLs activating pathogens has not been brought up before, but it’s the customer’s responsibility if they are dealing with potentially harmful chemicals/toxins.
- They check for toxins and strains that are on a list provided by the FBI (the two documents are attached)
List of Pathogens that Crosstalk
According to Davis, Muller, and Haynes, there are over 100 species of bacteria that are known to produce unique AHL inducers. Our concern is that some of these bacteria are pathogenic, and that AHL exposure could cause activation of virulence or biofilm formation, among other consequences. We assembled a list of 14 pathogenic bacteria that may potentially activate due to AHL molecules generated by our Senders.
Some organisms of note include Burkholderia cepacia, which works together with other bacteria to activate Cystic Fibrosis, Nautella sp. R11, which causes bleaching in coral, and Yersinia pestis, which notably caused the Bubonic Plague.
