Difference between revisions of "Team:Ionis Paris/Protocol 12"

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                                       <div class="blog_top">
 
                                       <div class="blog_top">
                                 <p><b>Warning: in order to get proper result analysis, it is better to perform 3 replicates for each toluene concentration</b></p>
+
                                 <p><i> 3 replicates for each toluene concentration were realize in order to improve the results statistics </i></p>
 
                               <h4 class="blog" style="margin-top:20px">
 
                               <h4 class="blog" style="margin-top:20px">
 
                                     Toluene preparation: stock solutions</h4>
 
                                     Toluene preparation: stock solutions</h4>
                                     <p><b><u>100mg/L:</u></b> Dilution of absolute liquid toluene (Cm= 867g/L) to obtain a final toluene concentration at 100mg/L: Add 11,53uL of toluene into 100mL Ethanol (calculations done from toluene's molecular weight)<br/><b><u>100µg/L:</u></b> Dilute 10µL of the first stock solution into 10mL of Ethanol</p>
+
 
 +
                                     <p><b><u>100mg/L:</u></b> Dilution of absolute liquid toluene (Cm= 867g/L) to obtain a final toluene concentration at 100mg/L: Add 11,53uL of toluene into 100mL ethanol (calculations done from toluene's molecular weight)<br/>
 +
<b><u>100µg/L:</u></b> Dilute 10µL of the first stock solution into 10mL of Ethanol</p>
  
 
                               <h4 class="blog" style="margin-top:20px">
 
                               <h4 class="blog" style="margin-top:20px">
 
                                     Inoculation</h4>
 
                                     Inoculation</h4>
 +
 
                                 <p>From 1 UFC:<br./>
 
                                 <p>From 1 UFC:<br./>
Resuspend colony in 20 mL of LB medium containing chloramphenicol at 25µg/mL but free of toluene and grow over night.<br/>
+
Resuspend a colony in 20mL of LB medium containing chloramphenicol at 25µg/mL but free of toluene and grow over night.<br/>
 
When turbidity is high, inoculate the appropriate volume of bacteria culture to liquid LB medium containing chloramphenicol to reach 0,1 OD in the flask (100mL). Incubate culture at 37°C and 250 rpm .<br/>
 
When turbidity is high, inoculate the appropriate volume of bacteria culture to liquid LB medium containing chloramphenicol to reach 0,1 OD in the flask (100mL). Incubate culture at 37°C and 250 rpm .<br/>
When the OD reach 0.1, separate the initial bacterial culture to several falcon tubes (5mL in each tube) and add toluene to reach the desired toluene concentration. </p>
+
Separate the initial bacterial culture into several falcon tubes (5mL in each tube) and add toluene to reach the desired toluene concentration. </p>
  
 
<table>
 
<table>
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<td> C1 </td>  
 
<td> C1 </td>  
 
<td> C2 </td>  
 
<td> C2 </td>  
<td> </td>
 
<td> C3 </td>
 
 
</tr>
 
</tr>
  
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<td> 10 </td>  
 
<td> 10 </td>  
 
<td> 10 </td>  
 
<td> 10 </td>  
<td> LB (mL) </td>
 
<td> 10 </td>
 
 
 
</tr>
 
</tr>
  
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<td> 0,5 </td>  
 
<td> 0,5 </td>  
 
<td> 50 </td>  
 
<td> 50 </td>  
<td> Toluene from stock solution 100mg/L (mL)  </td>
 
<td> 0,5 </td>
 
 
</tr>
 
</tr>
  
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<td> 5 </td>  
 
<td> 5 </td>  
 
<td> 500 </td>  
 
<td> 500 </td>  
<td> Obtain concentration (mg/L)  </td>
+
</tr>
<td> 5 </td>  
+
  
 +
</table>
 +
 +
<table>
 +
<tr>
 +
<td> </td>
 +
<td> C3 </td>
 
</tr>
 
</tr>
  
 +
<tr>
 +
<td> LB (mL) </td>
 +
<td> 10 </td>
 +
</tr>
 +
 +
<tr>
 +
<td> Toluene from stock solution 100mg/L (mL)  </td>
 +
<td> 0,5 </td>
 +
</tr>
 +
 +
<tr>
 +
<td> Obtain concentration (mg/L)  </td>
 +
<td> 5 </td>
 +
</tr>
 
</table>
 
</table>
  
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                                 <h4 class="blog" style="margin-top:20px">OD measurement over time (at t=0, t=30min, t=1h, t=2h…)</h4>
+
                                 <h4 class="blog" style="margin-top:20px">OD measurement over time </h4>
                                <p><b>NB: The blank must be the clean liquid LB medium</b><br/>
+
 
<b>NB : Samples must be diluted if OD is too high (>1)</b><br/> 
+
<p> OD measurment were realize every hours until 6 hours after toluene addition <br/>
 +
<i>NB: The blank must be the clean liquid LB medium</i><br/>
 +
<i>NB : Samples must be diluted if OD is too high (>1) </i> <br/> </p>
 +
 
 +
<p>
 
<u>For each culture:</u><br/>
 
<u>For each culture:</u><br/>
 
                                         <li>
 
                                         <li>
                                             <p>Pipette 100ul of culture and dilute in 900uL LB medium used for the culture (dilution 1/10)</p>
+
                                             <p>Pipette 100µL of culture and dilute in 900µL LB medium used for the culture (dilution 1/10)</p>
 
                                         </li>
 
                                         </li>
 
                                         <li>
 
                                         <li>
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                                     <li>
 
                                     <li>
 
                                         <a href="Protocol 12">
 
                                         <a href="Protocol 12">
                                             <span>Protocol 12 : Bacterial growth analysis</span>
+
                                             <span> Protocol 12: Cell Survival assay</span>
 
                                            
 
                                            
 
                                         </a>
 
                                         </a>

Revision as of 19:40, 16 October 2016

Protocol 12: Cell Survival assay

Aim: Assess the impact of toluene on a bacteria population

3 replicates for each toluene concentration were realize in order to improve the results statistics

Toluene preparation: stock solutions

100mg/L: Dilution of absolute liquid toluene (Cm= 867g/L) to obtain a final toluene concentration at 100mg/L: Add 11,53uL of toluene into 100mL ethanol (calculations done from toluene's molecular weight)
100µg/L: Dilute 10µL of the first stock solution into 10mL of Ethanol

Inoculation

From 1 UFC: Resuspend a colony in 20mL of LB medium containing chloramphenicol at 25µg/mL but free of toluene and grow over night.
When turbidity is high, inoculate the appropriate volume of bacteria culture to liquid LB medium containing chloramphenicol to reach 0,1 OD in the flask (100mL). Incubate culture at 37°C and 250 rpm .
Separate the initial bacterial culture into several falcon tubes (5mL in each tube) and add toluene to reach the desired toluene concentration.

C0 Control C1 C2
LB (mL) 10 10 10
Toluene from stock solution 100µg/L (µL) 0 0,5 50
Obtain concentration (ng/L) 0 5 500
C3
LB (mL) 10
Toluene from stock solution 100mg/L (mL) 0,5
Obtain concentration (mg/L) 5

Incubate culture at 37°C and 250 rpm. Regularly measure the OD with a spectrophotometer

OD measurement over time

OD measurment were realize every hours until 6 hours after toluene addition
NB: The blank must be the clean liquid LB medium
NB : Samples must be diluted if OD is too high (>1)
 

For each culture:

  • Pipette 100µL of culture and dilute in 900µL LB medium used for the culture (dilution 1/10)

  • Make the blank

  • Measure OD

  • Multiply OD of samples with dilution factor (10 times here)