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− | <p> We're a group of six different schools from the IONIS Education Group. For this competition we wanted to take advantages of the multiple schools and activity field given by the IONIS education group to create a solid project.</p> | + | <p> We're a group of six different schools from the IONIS Education Group. For this |
− | + | competition we wanted to take advantages of the multiple schools and activity field | |
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− | <li><a href="https://2016.igem.org/Team | + | Practice</a></li> |
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Revision as of 11:11, 18 October 2016
Realize a mix by adding the following component in a 1,5mL Eppendorf tube. 50µL of mix must be made per desired PCR reaction) Add 50µL of the mix in each 0,2mL PCR tubes. Lid Temperature: 95°C Initial denaturation : 95°C 5 min 25 cycles of : Final extension : 68°C for 5 min Hold at 4°C *precise Tm for each primer Gel purification : Run samples on an electrophoresis gel to check cloning efficiency. Realize a bacterial miniculture of the colony with satisfying PCR results. Inoculate the colony grown on the divided into square petri dish into a 50mL Falcon tube with 5mL LB + appropriate antibiotic (chloramphenicol at 25µg/mL).
Protocol 8 : Colony PCR
Aim: DNA Fragment amplification from bacteria colonies
NB : All components must be vortexed before use
Component Final concentration
Nuclease-free water
10X Standard Taq reaction Buffer 1X
10mM dNTPs 200µM
10µM Forward primer 0.2µM (0.05-1µM)
10µM Reverse primer 0.2µM (0.05-1µM)
Taq polymerase 5 units/50µL PCR
Pick a colony, add a stab of it into a PCR tube and put the rest of the colony on a new annotated and divided into square petri dish
Gently mix and spin down microcentrifuge PCR tubes.
Transfer PCR tubes to a PCR machine with the block preheated to 95°C
Set the following parameters for the PCR reaction :
- 95°C 30 s
- Tm* 1 min
- 68°C; 1 min per kB (amplification)
See the appropriate protocol (Protocol 3 : Electrophoresis )
This will serve for the subsequent miniprep. See the appropriate protocol (Protocol 9 : Miniprep )