Difference between revisions of "Team:Rice/Parts"

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<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
 
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<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
 
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<h5>Note</h5>
 
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<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
 
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<h5>Adding parts to the registry</h5>
 
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<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
 
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<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
 
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<h5>What information do I need to start putting my parts on the Registry?</h5>
 
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<p>The information needed to initially create a part on the Registry is:</p>
 
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<li>Part Name</li>
 
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<li>Part type</li>
 
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<li>Creator</li>
 
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<li>Sequence</li>
 
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<li>Short Description (60 characters on what the DNA does)</li>
 
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<li>Long Description (Longer description of what the DNA does)</li>
 
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<li>Design considerations</li>
 
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We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
 
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<h5>Inspiration</h5>
 
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<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
 
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<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
 
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<ul>
 
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<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
 
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<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
 
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<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
 
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<h5>Part Table </h5>
 
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<groupparts>iGEM2016 Example</groupparts>
 
 
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<table>
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  <tr>
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    <th>Part #</th>
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    <th>Name</th>
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    <th>Type</th>
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    <th>Description</th>
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  </tr>
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  <tr>
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    <td>Bba_K1878000</td>
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    <td>iRFP670</td>
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    <td>Basic</td>
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    <td>This fluorescent protein has an excitation wavelength of 643 nm and an emission wavelength of 670 nm</td>
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  </tr>
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  <tr>
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    <td>Bba_K1878001</td>
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    <td>iRFP713 (formerly "iRFP")</td>
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    <td>Basic</td>
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    <td>This fluorescent protein has an excitation wavelength of 690 nm and an emission wavelength of 713 nm</td>
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  </tr>
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  <tr>
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    <td>Bba_K1878002</td>
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    <td>pBAD/His/iRFP670</td>
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    <td>Composite</td>
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    <td>Arabinose inducible iRFP670 with His-tag</td>
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  </tr>
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  <tr>
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  <td>Bba_K1878003</td>
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  <td>pBAD/His/iRFP713</td>
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  <td>Composite</td>
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  <td>Arabinose inducible iRFP713 with His-tag</td>
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  </tr>
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  <tr>
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  <td>Bba_K1878004</td>
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  <td>fdhf/iRFP670</td>
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  <td>Composite</td>
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  <td>Hypoxia inducible iRFP670 with fdhf promoter</td>
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  </tr>
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  <tr>
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  <td>Bba_K1878005</td>
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  <td>fdhf/iRFP713</td>
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  <td>Composite</td>
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  <td>Hypoxia inducible iRFP713 with fdhf promoter</td>
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  </tr>
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  <tr>
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  <td>Bba_K1878006</td>
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  <td>mNarK/iRFP670</td>
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  <td>Composite</td>
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  <td>Hypoxia inducible iRFP670 with modified NarK promoter</td>
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  </tr>
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  <tr>
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  <td>Bba_K1878007</td>
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  <td>mNarK/iRFP713</td>
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  <td>Composite</td>
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  <td>Hypoxia inducible iRFP713 with modified NarK promoter</td>
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  </tr>
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  <tr>
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  <td>Bba_K1878008</td>
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  <td>SoxRS/iRFP670</td>
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  <td>Composite</td>
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  <td>Senses superoxide and nitric oxide and produces iRFP670</td>
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  </tr>
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  <tr>
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  <td>Bba_K1878009</td>
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  <td>SoxRS/iRFP713</td>
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  <td>Composite</td>
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  <td>Senses superoxide and nitric oxide and produces iRFP713</td>
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  </tr>
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Revision as of 06:15, 19 October 2016

Part # Name Type Description
Bba_K1878000 iRFP670 Basic This fluorescent protein has an excitation wavelength of 643 nm and an emission wavelength of 670 nm
Bba_K1878001 iRFP713 (formerly "iRFP") Basic This fluorescent protein has an excitation wavelength of 690 nm and an emission wavelength of 713 nm
Bba_K1878002 pBAD/His/iRFP670 Composite Arabinose inducible iRFP670 with His-tag
Bba_K1878003 pBAD/His/iRFP713 Composite Arabinose inducible iRFP713 with His-tag
Bba_K1878004 fdhf/iRFP670 Composite Hypoxia inducible iRFP670 with fdhf promoter
Bba_K1878005 fdhf/iRFP713 Composite Hypoxia inducible iRFP713 with fdhf promoter
Bba_K1878006 mNarK/iRFP670 Composite Hypoxia inducible iRFP670 with modified NarK promoter
Bba_K1878007 mNarK/iRFP713 Composite Hypoxia inducible iRFP713 with modified NarK promoter
Bba_K1878008 SoxRS/iRFP670 Composite Senses superoxide and nitric oxide and produces iRFP670
Bba_K1878009 SoxRS/iRFP713 Composite Senses superoxide and nitric oxide and produces iRFP713