Difference between revisions of "Team:Paris Saclay/Notebook/August/8"

(Created page with "{{Team:Paris_Saclay/notebook_header}} = Friday 5<sup>st</sup> August= ==Lab work== ===Visualization=== ==== Q5 PCR on pPS16_003, pPS16_004, pPS16_006 and pPS16_007 ==== ''B...")
 
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{{Team:Paris_Saclay/notebook_header}}
 
{{Team:Paris_Saclay/notebook_header}}
= Friday 5<sup>st</sup> August=
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=Monday 8<sup>st</sup> August=
 
==Lab work==
 
==Lab work==
 
===Visualization===
 
===Visualization===
  
 
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==== Q5 PCR on pPS16_006 and pPS16_007 ====
 
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==== Q5 PCR on pPS16_003, pPS16_004, pPS16_006 and pPS16_007 ====
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''By Caroline''
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The PCR was carried out following the usual [[Team:Paris_Saclay/Experiments#Q5PCR|protocol]] adapted to 50µL and with a TM at 70°C. The specific [[Team:Paris_Saclay/Experiments#primers|primers]] for each parts were using. The products were put to migrated on a 0.8%agarose gel with BET. Only, PCR form pPS16_003 and pPS16_004 showed a positive result.
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==== PCR Clean-up with the NucleoSpin kit ====
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''By Caroline''
 
''By Caroline''
  
The purification was carried out on DH5alp|pPS16_003, DH5alp|pPS16_004 and DH5alp|pPS16_007 following the usual [[Team:Paris_Saclay/Experiments#Purification|protocol]]. But, I forgot to diluted the Buffet NT3 with 100mL ethanol befor I began the purification and so any result was obtained on the 0.8% agarose gel.
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The PCR was carried out following the usual [[Team:Paris_Saclay/Experiments#phusion|protocol]] adapted to 50µL and with a TM at 72°C. The specific [[Team:Paris_Saclay/Experiments#primers|primers]] for each parts were using. The products were put to migrated on a 0.8%agarose gel with BET. No amplification were observed that was probably due to the fact that the extractions made on were eluted with water which is not working with this extraction kit.
  
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==== Liquid cultures of bacteria containing plasmid to extract ====
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''By Caroline, Charlène, Terrence''
  
File:T--Paris_Saclay--160722_Visualisation_PCRpPS16_002_7.JPG
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In order to redo the extractions that did not working due to the use of water instead of the elution buffer. To do it, 5mL of LB were mixed with Ampicillin at 50µg/mL at put at 37°C and at 180rpm overnight.
  
 
{{Team:Paris_Saclay/notebook_footer}}
 
{{Team:Paris_Saclay/notebook_footer}}

Revision as of 13:43, 9 August 2016

Monday 8st August

Lab work

Visualization

Q5 PCR on pPS16_006 and pPS16_007

By Caroline

The PCR was carried out following the usual protocol adapted to 50µL and with a TM at 72°C. The specific primers for each parts were using. The products were put to migrated on a 0.8%agarose gel with BET. No amplification were observed that was probably due to the fact that the extractions made on were eluted with water which is not working with this extraction kit.

Liquid cultures of bacteria containing plasmid to extract

By Caroline, Charlène, Terrence

In order to redo the extractions that did not working due to the use of water instead of the elution buffer. To do it, 5mL of LB were mixed with Ampicillin at 50µg/mL at put at 37°C and at 180rpm overnight.