Team:UT-Tokyo/Model
Contents
Transcription and Translation
Subtitle
We found some parameter sets on which e-coli changes gene expression by a generation. In addition, we also found ones on which circuit establishes the loops stably regardless of small fluctuation (noise in experiment). Therefore, our gene circuit seems likely to work as designed.
Introduction
Method
| Parameters | character |
| sigma-factor A,B,C | $\sigma_A, \sigma_B, \sigma_C$ |
| anti-sigma factor, A, B, C | $\sigma_{-A}, \sigma_{-B}, \sigma_{-C}$ |
| mRNA of sigma factor A, B, C without toehold switch | $R_A, R_B, R_C$ |
| mRNA of anti-sigma-factor A, B,C without toehold switch | $R_{-A}, R_{-B}, R_{-C}$ |
| mRNA of sigma factor A, B, C with toehold switch | $R_{td, A}, R_{td, B}, R_{td, C}$ |
| taRNA | $[\mathrm(taRNA)]$ |
| IPTG | $[\mathrm(IPTG)]$ |
| immature GFP, RFP, CFP | $[\mathrm(imGFP)], [\mathrm(imRFP)], [\mathrm(imCFP)]$ |
| mature GFP, RFP, CFP | $[\mathrm(GFP)], [\mathrm(RFP)], [\mathrm(CFP)]$ |
| mRNA of GFP, RFP, CFP | $R_{GFP}, R_{RFP}, R_{CFP}$ |
Stability Analysis
Abstract
