Difference between revisions of "Team:Lubbock TTU/Description"

 
(8 intermediate revisions by the same user not shown)
Line 79: Line 79:
 
</br></br><h3 style="padding-top:0px;">Aim 1</h3>
 
</br></br><h3 style="padding-top:0px;">Aim 1</h3>
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
Content
+
We were able to design constructs for two therapeutic proteins, aprotinin and platelet derived growth factor (PDGF). Our goal was to use these therapeutic proteins to decrease wound healing times. Aprotinin, being a matrix-metalloprotease (MMP) inhibitor, will inhibit wound-site proteases, preventing these proteases from breaking down the healing extra-cellular matrix (ECM). PDGF will stimulate cellular regeneration in chronic wounds, helping to speed up and fortify the wound healing process.
 +
</br></br>
 +
<center><img src="https://static.igem.org/mediawiki/2016/a/a4/T--Lubbock_TTU--dc2.png" width="350"></img>
 +
&emsp;
 +
<img src="https://static.igem.org/mediawiki/2016/0/09/T--Lubbock_TTU--dc4.png" width="350"></img></center>
 
</br><div id="readmore"><a href="https://2016.igem.org/Team:Lubbock_TTU/Experiments">Experimental Data →</a></br></div>
 
</br><div id="readmore"><a href="https://2016.igem.org/Team:Lubbock_TTU/Experiments">Experimental Data →</a></br></div>
 
     </div> <!-- End of col-md-14 -->
 
     </div> <!-- End of col-md-14 -->
Line 91: Line 95:
 
</br></br><h3 style="padding-top:0px;">Aim 2</h3>
 
</br></br><h3 style="padding-top:0px;">Aim 2</h3>
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
Content
+
We designed, created, and tested a bioreactor to grow our bacteria in conditions so as to maximize protein production. With this optimal environment, we hoped to create a sustainable, cost-effective protocol to mass-produce our therapeutic agents.
 +
</br></br>
 +
<center><img src="https://static.igem.org/mediawiki/2016/e/e7/T--Lubbock_TTU--dc1.png" width="350"></img>
 +
&emsp;
 +
<img src="https://static.igem.org/mediawiki/2016/7/71/T--Lubbock_TTU--dc5.png" width="350"></img></center>
 
</br><div id="readmore"><a href="https://2016.igem.org/Team:Lubbock_TTU/Experiments">Experimental Data →</a></br></div>
 
</br><div id="readmore"><a href="https://2016.igem.org/Team:Lubbock_TTU/Experiments">Experimental Data →</a></br></div>
 
     </div> <!-- End of col-md-14 -->
 
     </div> <!-- End of col-md-14 -->
Line 103: Line 111:
 
</br></br><h3 style="padding-top:0px;">Aim 3</h3>
 
</br></br><h3 style="padding-top:0px;">Aim 3</h3>
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
Content
+
We made a control collagen matrix to compare with a collagen matrix that will be infused with our purified proteins, aprotinin and PDGF, which would imitate the human extracellular matrix. This would give the wound bed all the resources it would need for a speedy recovery.
 +
</br></br>
 +
<center><img src="https://static.igem.org/mediawiki/2016/8/85/T--Lubbock_TTU--dc3.png" width="350"></img></center>
 
</br><div id="readmore"><a href="https://2016.igem.org/Team:Lubbock_TTU/Experiments">Experimental Data →</a></br></div>
 
</br><div id="readmore"><a href="https://2016.igem.org/Team:Lubbock_TTU/Experiments">Experimental Data →</a></br></div>
 
     </div> <!-- End of col-md-14 -->
 
     </div> <!-- End of col-md-14 -->
Line 115: Line 125:
 
</br></br><h3 style="padding-top:0px;">Conclusion</h3>
 
</br></br><h3 style="padding-top:0px;">Conclusion</h3>
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
Content
+
Coupling a bioreactor with our Kil protein secretion method, we will be able to purify large quantities of DsbA tagged therapeutic protein from the supernatant with a continuous flow through process. Western blot analysis helped us to confirm the identity of our purified PDGF-B protein, and the bioreactor allowed us to produce large amounts of our secretion proteins.
 
     </div> <!-- End of col-md-14 -->
 
     </div> <!-- End of col-md-14 -->
 
     </br></br><div class="col-md-2"></div>
 
     </br></br><div class="col-md-2"></div>
Line 126: Line 136:
 
</br></br><h3 style="padding-top:0px;">Gold Medal Part Improvement</h3>
 
</br></br><h3 style="padding-top:0px;">Gold Medal Part Improvement</h3>
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
 
     <div class="col-md-14 content" style="max-width:1000px;padding:10px 50px;">
Content
+
A big part of the 2016 TTU iGEM teams project relied upon being able to produce Aprotinin (BBa_K1456006), a protease inhibitor for infusion into a collagen scaffold. To increase our chances we decided to improve upon this part which was created in 2014 by the ATOMS-Turkiye iGEM team.
 +
 
 +
</br></br>
 +
The first thing we did to improve this part was to remove two illegal sites to make it compatible with all iGEM RFC standards. Secondly, we found out that Aprotinin contains three disulphide bonds, which make correct folding in the cytoplasm difficult. To overcome this problem we decided to add a periplasmic localization peptide to K1456006, which allows for cotranslational translocation into the periplasm, where disulphide bonds are more easily formed.
 +
 
 +
</br></br>
 +
<center><img src="https://static.igem.org/mediawiki/2016/7/7f/T--Lubbock_TTU--ptimpr.png" width="450"></img></center>
 +
 
 
     </div> <!-- End of col-md-14 -->
 
     </div> <!-- End of col-md-14 -->
 
     </br></br><div class="col-md-2"></div>
 
     </br></br><div class="col-md-2"></div>

Latest revision as of 03:28, 20 October 2016


Project Overview


In 2010 it was estimated that 6.5 million people in the United States alone suffered from chronic wounds, accruing an annual cost of approximately $2.5 billion. Furthermore, experts predict that the burden of chronic wounds will increase rapidly in the near future due to increasing medical costs, an aging population, and the emergence of antibiotic resistant bacteria. Chronic wounds are characterized by their inability to progress through an orderly set of stages within a time period of about three months. Wound healing progresses through four successive stages known as hemostasis, inflammation, proliferation and remodeling.

        

The etiology of chronic wounds is very diverse, but patients frequently suffer from persisting chronic wounds arrested in the inflammation phase due to overproduction of wound site proteases. In turn, proteases inhibit the proliferation phase by degrading growth factors meant to induce tissue growth. They also inhibit tissue remodeling by degrading the collagen scaffold, which new cells migrate into. Thus, proteases decrease wound healing rates by degrading host growth factors and the extracellular matrix of the wound site.

Our team is using a bioreactor and synthetic biology principles to purify and infuse a synthetic collagen scaffold with platelet derived growth factor (PDGF) and Aprotinin to induce the healing process of chronic wounds. Synthetic collagen scaffolds are currently being used as a replacement for skin grafts in the treatment of burn victims. They have been shown to increase wound healing by attracting tissue cells, such as keratinocytes and aiding in angiogenesis and re-epithelialization.

In our collagen scaffold, the aprotinin serves to prevent degradation from wound site proteases. Furthermore, recent studies have shown that aprotinin can increase angiogenesis, ultimately improving synthetic scaffold integration efficiency. PDGF has been well studied in the past and is the first growth factor to be approved by the FDA for human treatment. Currently ointments infused with PDGF, such as REGRANEX are being used to treat chronic wounds. We envision that our technology will help to introduce a novel synthetic-biology-based process for the development of therapeutic wound dressings. Learn more.



Aim 1

We were able to design constructs for two therapeutic proteins, aprotinin and platelet derived growth factor (PDGF). Our goal was to use these therapeutic proteins to decrease wound healing times. Aprotinin, being a matrix-metalloprotease (MMP) inhibitor, will inhibit wound-site proteases, preventing these proteases from breaking down the healing extra-cellular matrix (ECM). PDGF will stimulate cellular regeneration in chronic wounds, helping to speed up and fortify the wound healing process.






Aim 2

We designed, created, and tested a bioreactor to grow our bacteria in conditions so as to maximize protein production. With this optimal environment, we hoped to create a sustainable, cost-effective protocol to mass-produce our therapeutic agents.






Aim 3

We made a control collagen matrix to compare with a collagen matrix that will be infused with our purified proteins, aprotinin and PDGF, which would imitate the human extracellular matrix. This would give the wound bed all the resources it would need for a speedy recovery.






Conclusion

Coupling a bioreactor with our Kil protein secretion method, we will be able to purify large quantities of DsbA tagged therapeutic protein from the supernatant with a continuous flow through process. Western blot analysis helped us to confirm the identity of our purified PDGF-B protein, and the bioreactor allowed us to produce large amounts of our secretion proteins.