Team:Guanajuato Mx/BasicParts

iGEM Guanajuato Mx

BASIC PARTS


Promoter chiA74 from Bacillus thuringiensis (Ba_K2057000)

The promoter chiA74 (chiA74p) controls the expression of the endochitinase chiA74 from a strain of Bacillus thuringiensis. This regulatory element is also useful to drive expression of a gene in Escherichia coli in a constitutive form (Barboza- Corona et al. 2003, 2014). We have shown that chiA74p drive the expression of the green fluorescent protein (gfp) gene in E. coli. In this sense, chiA74p can be used to allow the synthesis of a gene in E. coli that want to be expressed constitutively. Biobrick also include the ribosome binding sequence of chiA74. This is one of the promoter that our team will use to express constitutively the lasR gene in E. coli. Promoter chiA74p has the consensus sequences in 374-384 bp (-35) region) and 399-404 (-10). The ribosome-binding site is located on 559-564 bp. (II) The whole sequence of the chiA74 gene including its regulatory elements (promoter, RBS, transcriptional terminator) is found under accession number AF424979 (GenBank nucleotide sequence database).

References

  1. Barboza-Corona JE, Delgadillo-Ángeles JL, Castañeda-Ramíırez JC, Barboza- Pérez UE, Casados-Vázquez LE, Bideshi DK and del Rincón-Castro MC (2014) Bacillus thuringiensis subsp. kurstaki HD1 as a factory to synthesize alkali-labile ChiA74∆sp chitinase inclusions, Cry crystalsand spores for applied use. Microb Cell Fact 13, 15. doi: 10.1186/1475-2859-13-15
  2. Barboza Corona JE, Nieto-Mazzocco E, Velázquez-Robledo R, Salcedo- Hernandez R, Bautista M, Jiménez B, Ibarra JE (2003) Cloning, sequencing and expression of the chitinase chiA74 from Bacillus thuringiensis. Appl Environ Microbiol. 2003 Feb;69(2):1023-9.


Promoter BtI-BtII (Ba_K2057001)

The BtI-BtII promoter (BtI-BtIIp) is a dual strong promoter that controls the expression of Cry1Ac proteins in Bacillus thuringiensis, but it allows the expression of a gene constitutively in Escherichia coli. In this sense, BtI-BtIIp can be used to allow the synthesis of a gene in E. coli that want to be expressed constitutively in E. coli. This is one of the promoter that our team will use to express constitutively the lasR gene in E. coli. The biobrick also include a ribosome-binding site to to start the synthesis of a proteins. This promoter can can be used not only in E. coli but also in B. subtilis and B. thuringiensis. Promoter BtI-BtII has the consensus sequences in 285-291 bp (BtI, -35 region), 294-302 (Bt II, -10) and 306-313 (BtI, - 10). The ribosome binding site is located on 377-381 bp. The whole sequence of the cry1Ac gene including its regulatory elements (promoter, RBS, transcriptional terminator) is found under accession number M35524 (GenBank nucleotide sequence database).

References

  1. Von Tersch MA, Robbins HL, Jany CS, Johnson TB (1991) Insecticidal toxins from Bacillus thuringiensis subsp. kenyae: gene cloning and characterization and comparison with B. thuringiensis subsp. kurstaki CryIA(c) toxins Appl. Environ. Microbiol. 57 (2): 349-358.
  2. Sedlak M1, Walter T, Aronson A (2000) Regulation by overlapping promoters of the rate of synthesis and deposition into crystalline inclusions of Bacillus thuringiensis delta-endotoxins. J Bacteriol. 182(3):734-41.


Alginate lyase from Bacillus thuringiensis (BBa_K2057002)

Alginate lyases destroy the alginate, which is the main component of biofilm in many bacteria, including that produced by Pseudomonas aeruginosa. As it has never reported the cloning of alginate lyase gene in B. thuringiensis we designed the primers using the genome of Bacillus thuringiensis israelensis AM65-52 (GenBank accession number: CP013275.1). We amplified the alginate lyase gen from the genome of Bacillus thuringiensis 4Q7. We are in process of sequencing and test its functionality in E. coli

References

  1. Farrel EK, Tipton PA (2012) Functional characterization of AlgL, an alginate lyase from Pseudomona aeruginosa. Biochem. 51:10259-10266.
  2. Tielen, P, Kuhn H, Rosenau F, Jaeger KE, Flemming HC, Wingender J (2013) Interaction between extracellular lipase LipA and the polysaccharide alginate of Pseudomonas aeruginosa. BMC Microbiol. 159: 221–228.


Signal peptide of ChiA74 (BBa_K2057007)

Signal peptide of ChiA74 translocate chitinase ChiA74 in Bacillus thuringiensis and Escherichia coli. Sequence comes from the endochitinase gene chiA74 that is located on a chromosomal sequence of B. thuringiensis. It will be used to translocate the alginate lyase and the microcin in E. coli.

References

  1. Barboza-Corona JE, Delgadillo-Ángeles JL, Castañeda-Ramíırez JC, Barboza- Pérez UE, Casados-Vázquez LE, Bideshi DK and del Rincón-Castro MC (2014) Bacillus thuringiensis subsp. kurstaki HD1 as a factory to synthesize alkali-labile ChiA74∆sp chitinase inclusions, Cry crystalsand spores for applied use. Microb Cell Fact 13, 15. doi: 10.1186/1475-2859-13-15
  2. Barboza Corona JE, Nieto-Mazzocco E, Velázquez-Robledo R, Salcedo- Hernandez R, Bautista M, Jiménez B, Ibarra JE (2003) Cloning, sequencing and expression of the chitinase chiA74 from Bacillus thuringiensis. Appl Environ Microbiol. 2003 Feb;69(2):1023-1029.