Difference between revisions of "Team:Wageningen UR/Notebook"

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<h3 text-align="center">Find the documentation of our research here.</h3>
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<ul class="square-menu">
  
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/ProteinEngineering" style="border:5px solid #fff372"> <!--Change box color here-->
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                    <div class="square-menu-header">
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                        <img src="https://static.igem.org/mediawiki/2016/d/da/T--Wageningen_UR--engibutton.jpg"/>
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                        <h3 style="color:#6d5d31">Protein Engineering</h3> <!--Change text color here-->
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                    <p>We wanted to engineer Cry3Aa to become toxic to <i>Varroa destructor</i>. </p>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/InVitroAssay" style="border:5px solid #fff372"> <!--Change box color here-->
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                        <img src="https://static.igem.org/mediawiki/2016/5/55/T--Wageningen_UR--vesibutton.jpg"/>
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                        <h3 style="color:#6d5d31"><i>In Vitro</i> Assay</h3> <!--Change text color here-->
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                    <p>To provide an alternative for tests on live <i>Varroa</i> mites, we designed an assay that uses brush border membrane vesicles.</p>
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                    <a href=https://2016.igem.org/Team:Wageningen_UR/Notebook/VarroaIsolates style="border:5px solid #fff372"> <!--Change box color here-->
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                    <div class="square-menu-header">
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                        <img src="https://static.igem.org/mediawiki/2016/a/a3/T--Wageningen_UR--mitebutton.jpg"/>
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                        <h3 style="color:#6d5d31"><i>Varroa</i> isolates</h3> <!--Change text color here-->
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                    </div>
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                    <p>We tried to find our own <i>Varroa</i> entomopathogen. </p>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/Riboswitch" style="border:5px solid #fff372"> <!--Change box color here-->
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                        <img src="https://static.igem.org/mediawiki/2016/f/f4/T--Wageningen_UR--ribobutton.jpg"/>
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                        <h3 style="color:#6d5d31">Riboswitches</h3> <!--Change text color here-->
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                    </div>
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                    <p>To detect the presence of <i>Varroa</i> mites in the beehive, we made a B12 and a guanine riboswitch.</p>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/QuorumSensing" style="border:5px solid #fff372"> <!--Change box color here-->
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                        <img src="https://static.igem.org/mediawiki/2016/b/b1/T--Wageningen_UR--quorumbutton.jpg"/>
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                        <h3 style="color:#6d5d31">Population Dynamics</h3 > <!--Change text color here-->
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                    </div>
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                    <p>A quorum sensing system was characterized to regulate toxin production in BeeT.</p>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/OptogeneticKillSwitch" style="border:5px solid #fff372"> <!--Change box color here-->
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                    <div class="square-menu-header">
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                        <img src="https://static.igem.org/mediawiki/2016/6/61/T--Wageningen_UR--lightbutton.jpg"/>
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                        <h3 style="color:#6d5d31; font-size:18px;">Optogenetic Kill Switch</h3> <!--Change text color here-->
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                    </div>
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                    <p>The light-induced kill switch was one of our biocontainment methods.</p>
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                    </a>
  
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<div class="column full_size">
 
  
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<p> Document the dates you worked on your project.</p>
 
  
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/Chitinases" style="border:5px solid #fff372"> <!--Change box color here-->
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                        <img src="https://static.igem.org/mediawiki/2016/a/a3/T--Wageningen_UR--mitebutton.jpg"/>
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                        <h3 style="color:#6d5d31">Chitinases</h3> <!--Change text color here-->
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                    </div>
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                    <p>As a back-up, we wanted to use chitinases which are more harmful to <i>Varroa destructor</i> than honeybees. </p>
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<h5>What should this page have?</h5>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/Cas9" style="border:5px solid #fff372"> <!--Change box color here-->
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<ul>
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                    <div class="square-menu-header">
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<li>Chronological notes of what your team is doing.</li>
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                        <img src="https://static.igem.org/mediawiki/2016/7/76/T--Wageningen_UR--casbutton.jpg"/>
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<li> Brief descriptions of daily important events.</li>
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                        <h3 style="color:#6d5d31; font-size:18px;">Cas9-based Kill Switch</h3> <!--Change text color here-->
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<li>Pictures of your progress. </li>
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                    </div>
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<li>Mention who participated in what task.</li>
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                    <p>The Cas9-based kill switch was one of our biocontainment methods.</p>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/ToxinScanner" style="border:5px solid #fff372"> <!--Change box color here-->
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                    <div class="square-menu-header">
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                        <img src="https://static.igem.org/mediawiki/2016/a/a3/T--Wageningen_UR--mitebutton.jpg"/>
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                        <h3 style="color:#6d5d31">Toxin Scanner</h3> <!--Change text color here-->
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                    </div>
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                    <p>We made a software tool for finding new Cry proteins toxic to <i>Varroa destructor</i>. </p>
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<h5>Inspiration</h5>
 
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<p>You can see what others teams have done to organize their notes:</p>
 
  
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<ul>
 
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<li><a href="https://2014.igem.org/Team:ATOMS-Turkiye/Notebook">2014 ATOMS-Turkiye</a></li>
 
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<li><a href="https://2014.igem.org/Team:Tec-Monterrey/ITESM14_project.html#tab_notebook">2014 Tec Monterrey</a></li>
 
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<li><a href="https://2014.igem.org/Team:Kyoto/Notebook/Magnetosome_Formation#title">2014 Kyoto</a></li>
 
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<li><a href="https://2014.igem.org/Team:Cornell/notebook">2014 Cornell</a></li>
 
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</ul>
 
  
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                <li>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/ecoli_survival" style="border:5px solid #fff372"> <!--Change box color here-->
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                    <div class="square-menu-header">
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                        <img src="https://static.igem.org/mediawiki/2016/5/53/T--Wageningen_UR--metabutton.jpg"/>
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                        <h3 style="color:#6d5d31;"><i>E. coli</i> survival</h3> <!--Change text color here-->
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                    </div>
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                    <p>Following the results of the Metabolic Model, we needed more data.</p>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/toggleswitch" style="border:5px solid #fff372"> <!--Change box color here-->
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                        <img src="https://static.igem.org/mediawiki/2016/9/96/T--Wageningen_UR--togglebutton.jpg"/>
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                        <h3 style="color:#6d5d31">Toggle Switch</h3> <!--Change text color here-->
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                    </div>
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                    <p font style="font-size:15px; font-family: snap,arial, sans-serif";> We designed a toggle switch that could coordinate mites sensing, BT's toxin production and light sensing with fast responsiveness.</p>
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                </li>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/Outreach" style="border:5px solid #fff372"> <!--Change box color here-->
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                        <img src="https://static.igem.org/mediawiki/2016/b/bf/T--Wageningen_UR--outreachbutton.jpg"/>
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                        <h3 style="color:#6d5d31">Human Outreach</h3> <!--Change text color here-->
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                    </div>
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                    <p>We implemented our outreach into our research as much as we could. Find the details here!</p>
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                </li>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/beehave" style="border:5px solid #fff372"> <!--Change box color here-->
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                        <img src="https://static.igem.org/mediawiki/2016/9/96/T--Wageningen_UR--togglebutton.jpg"/>
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                        <h3 style="color:#6d5d31">BEEHAVE</h3> <!--Change text color here-->
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                    </div>
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                    <p font style="font-size:18px; font-family: snap,arial, sans-serif";> We adapted the BEEHAVE model to include BeeT. </p>
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                </li>
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</li>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/popmodel" style="border:5px solid #fff372"> <!--Change box color here-->
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                    <div class="square-menu-header">
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                        <img src="https://static.igem.org/mediawiki/2016/b/b1/T--Wageningen_UR--quorumbutton.jpg"/>
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                        <h3 style="color:#6d5d31">Population Model</h3> <!--Change text color here-->
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                    <p> Modelling of the population dynamics regulation system.</i>. </p>
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</li>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/OptogeneticKillSwitchModel" style="border:5px solid #fff372"> <!--Change box color here-->
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                    <div class="square-menu-header">
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                        <img src="https://static.igem.org/mediawiki/2016/6/61/T--Wageningen_UR--lightbutton.jpg"/>
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                        <h3 style="color:#6d5d31; font-size:18px;">Kill Switch Model</h3> <!--Change text color here-->
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                    </div>
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                    <p>The optogenetic kill switch was modeled with ODEs to understand the system in more detail.</p>
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</li>
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                    <a href="https://2016.igem.org/Team:Wageningen_UR/Notebook/MetabolicModelling" style="border:5px solid #fff372"> <!--Change box color here-->
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                        <img src="https://static.igem.org/mediawiki/2016/5/53/T--Wageningen_UR--metabutton.jpg"/>
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                        <h3 style="color:#6d5d31">Metabolic Modelling</h3> <!--Change text color here-->
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                    </div>
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                    <p>We wanted to use a metabolic model to see the effect of our BeeT distribution method.</p>
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</p>
 
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Latest revision as of 17:32, 19 October 2016

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Wageningen UR iGEM 2016

 

 

 

Find the documentation of our research here.