Difference between revisions of "Team:SCAU-China/Safety"

 
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<div class="h1_font_size">Safety</div>
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<div class="h2_font_size">Risk assessment</div>
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<p>&nbsp;</p>
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<p>&nbsp;</p>
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<div class="p_font_size" style="text-indent:0em">As our project is to use the rice as a factory to produce astaxanthin, and we also hope that aSTARice can serve as a kind of food in human’s daily lives one days, so we are very concerned about the safety of aSTARice.</div>
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<p>&nbsp;</p>
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<div class="p_font_size">We believe that risks are mainly embodied in two aspects. The frist problem is that the encoding products of marker genes might be toxic and allergenic potentially for human or livestock. Antibiotic genes might be transferred into gut microbes’ genome of humans or animals, increasing the resistance of the microbes to the antibiotic. The other one is that marker genes could spread through pollens or other ways into other organisms, which is termed gene flow. In population genetics, gene flow (also known as gene migration) is the transfer of alleles or genes from one population to another, which may lead to unimaginable damage to the ecological environment.</div>
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<p>&nbsp;</p>
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<div class="p_font_size">In order to reduce the effects of pollen-mediated crop-to-crop transgene flow on environment, we use a technique called selectable marker-free system, so the final aSTARice is a marker-free transgenic plants(MFTPs). We design a <font style="font-style:italic">Cre-loxP</font> based side-direct recombinant system to knock out hygromycin phosphotransferase gene, minimizing the effect of the selectable maker gene.</div>
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<p>&nbsp;</p>
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<div class="p_font_size">To further reduce the unpredictable  threat of gene flow, we grow rice in pot culture and greenhouse-environment. What's more, we are also analyzing coding products by HPLC and trying to make sure that there is no harmful products in our rice.</div>
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<br>
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<div class="p_font_size">Because we are the first team who choose rice as a chassis, we have to assess the safety for rice. Rice is the self-pollinated plant so that the genotype in the individuals is pure and homogeneous. The probabilities that two flowers take place cross-pollinated is one percent, and the distance of the spread of rice pollen is close to one meter. Rice isn’t included in the white line, so we make a  checked-in on the official website.</div></div>
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<p>&nbsp;</p>
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<p>&nbsp;</p>
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<p>&nbsp;</p>
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<div class="h2_font_size">Design for marker free</div>
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<p>&nbsp;</p>
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<p>&nbsp;</p>
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<div class="p_font_size">In this part, we used a site-specific <font style="font-style:italic">Cre/loxP</font> recombination to delete the selective marker. To delete the selective resistance gene in transgenic rice, a marker-free element was used to assemble into four-gene multigene vector. This marker-free element was placed between two <font style="font-style:italic">loxP</font> sites, and consists of a HPT (hygromycin) resistance gene expression cassette and a <font style="font-style:italic">Cre</font> gene expression cassette controlled by anther-specific promoter (Figure 1). When <font style="font-style:italic">Cre</font> gene was expressed in transgenic rice anther, the Cre enzyme deleted the marker-free element between two <font style="font-style:italic">loxP</font> sites. <a href="https://2016.igem.org/Team:SCAU-China/Design#markerfree" text-decoration=underline>You can read more details, please click here! </a></div>
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<p>&nbsp;</p>
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<div class="p_font_size" style="margin-bottom:20px"><small><font style="font-weight:bold">Figure 1</font> &nbsp;&nbsp;The schematic diagram of the marker-free element. <font style="font-style:italic">PV4</font> is an anther-specific promoter that drives <font style="font-style:italic">Cre</font> gene expression in anther.</small></div>
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<p>&nbsp;</p>
  
      <div class="text">Rice was chose as the chassis though it isn’t included in the white line,but we checked-in with the official website in the beginning.Because we are the first team who choose rice as chassis,we have to asses the safety for rice.<br><br>
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<div class="h2_font_size">Laws & regulations </div>
Rice is the self-pollinated plant so that the gemotype in the individuals is pure and homogeneous.The probabilities that two flowers take place cross-pollinated are just 1%,and the distance of the spread of rice pollen are hardly 1meter.<br><br>
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<p>&nbsp;</p>
The phenomena of pollen escape are the main ways which lead to the flow of exogenous gene of transgene plants.Recently,the reaches of transgene plants verified that the exogenous gene of transgene plants will flow to the same species or weeds and even the conventional species.As igemers,we took safety into consideration carefully so that we saw plentiful papers ,and that we found a conclusion that under the close distance less than 1% adjacent non-genetically modified plants take place gene flow.If we increase the distance to 5~10 meters,the probabilities decrease to 0.001%~0.0001%,which will not happen in theory.when planting rice,we follow seriously the safe regulations of transgene plantsSo we have faith that it is impossible for gene flow come up under this plant distance.<br><br>
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<p>&nbsp;</p>
  We also employed the cre-loxp system to remove selected maker.particular information please check in the part----maker free.
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<div class="p_font_size">The credibility of the policy about “aSTARice” transgenic rice project:</div>
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<p>&nbsp;</p>
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<div class="p_font_size"><font style="font-weight:bold">The World Health Organization</font></div>
   
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<p>&nbsp;</p>
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<div class="p_font_size">In 2002, the World Health Organization claimed in"20 questions about genetically modified food". All of the genetically modified products as so far in the international market have passed the risk assessment by the national authorities. These different assessments in general follow the same basic principles, including the environment and human health risk assessment. These assessments are transparent, they did not show any risk for human health.</div>
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<p>&nbsp;</p>
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<div class="p_font_size"><font style="font-weight:bold">The United Nations</font></div>
      <li><a href="#vecter">Safe Project Design</a></li>
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<p>&nbsp;</p>
      <li><a href="#tissue" class="on">Safe lab work</a></li>
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<div class="p_font_size">The Food and Agriculture Organization of the United Nations in 2003-2004, in "the food and agriculture condition report”clearly pointed out that the current existed modified crops and food is safe, the method used to test its safety is appropriate. So far, there is no safety accident caused by eating genetically modified crops. Millions of people eat the food derived from genetically modified crops, mainly maize, soybean and rape seed, but did not find any adverse effect.</div>
      <li><a href="#pcr">Marker free</a></li>
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<p>&nbsp;</p>
      </ul>
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<div class="p_font_size"><font style="font-weight:bold">The European</font></div>
      <div class="text"><p>1. Training</p>
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<p>&nbsp;</p>
Members in our team have read the established laboratory safety principles of our school and the topics in our safety training can be summarized as follows: <br>
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<div class="p_font_size">In 2009, the transgenic group of European food safety authority set out an authoritative scientific opinion about herbicide resistant and insect-resistantcrops that in terms of impact on the environment of human and animal health, gm is the same safe as non-gm, without any harm to health and the environment.</div>
I.Non-biological operations:<br>
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<p>&nbsp;</p>
I.1 Handling toxic chemicals<br>
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<div class="p_font_size"><font style="font-weight:bold">The United States</font></div>
I.2 Emergency measures(such as how to tackle fire, electric leakage and negligent wounds)<br>
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<p>&nbsp;</p>
I.3 Instruments and facilities operation principles<br><br>
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<div class="p_font_size">In 2010, the National Academy of Sciences of the United States claimed in “the influence on American agricultural sustainability ”. In general, compared to traditional agricultural technology for American farmers, genetically modified has created a huge environmental benefits and economic benefits.</div>
 
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<p>&nbsp;</p>
 
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<div class="p_font_size">The World Health Organization, the Food and Agriculture Organization of the United Nations, the US Food and Drug Administration and other international organizations and authorities have said the current approval of commercialization of transgenic food is safe and edible.</div>
II Biological operations:<br>
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<p>&nbsp;</p>
II.1 Potential threats of our engineering bacterium (Escherichia coli)<br>
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<div class="p_font_size"><font style="font-weight:bold">China</font></div>
II.2 Effective protection during organism operations<br>
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<p>&nbsp;</p>
II.3 Waste materials handling measures<br>
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<div class="p_font_size">The Chinese government attaches great importance to the management work of the safety of agricultural genetically modified organisms, has formed a set of law which is suitable for China's national situation and consistent with international convention of laws and regulations, technical regulations and management system. As a result,it has achieved remarkable results in accordance with the implementation of safety management.</div>
II.4 Emission rules
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<p>&nbsp;</p>
</div>  
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<div class="p_font_size">1. The legal system: the agricultural genetically modified organisms safety management regulations, the measures for the administration of agricultural genetically modified organisms safety assessment, the safety measures for the administration of import of agricultural genetically modified organisms, the identification measures for the administration of agricultural genetically modified organisms, the agricultural genetically modified organisms processing measures for examination and approval, the inspection and quarantine measures for the administration of entry and exit of genetically modified products.</div>
 
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<p>&nbsp;</p>
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<div class="p_font_size">2. The administrative management system: joint inter-ministerial meeting, agricultural genetically modified organisms safety management leading group, the provincial administrative department of agriculture, municipal (county) level administrative department of agriculture.</div>
      <img src="https://static.igem.org/mediawiki/2016/0/07/T--SCAU-China--safetu_01.JPG"><br><br>
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<p>&nbsp;</p>
      <img src="https://static.igem.org/mediawiki/2016/7/7d/T--SCAU-China--safetu_02.JPG">
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<div class="p_font_size">3. Technical support system, safety evaluation, detection, monitoring and technical standards.</div>
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<p>&nbsp;</p>
 
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<div class="h2_font_size">Lab work</div>
<div class="text"><p>2. Rules and Regulations</p>
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<p>&nbsp;</p>
We have graduate students as our supervisors to ensure our operation correctness preventing safety problems. All of our team members have at least been working in a lab for 3 months and received biosafety training. The biosafety guidelines of our institution can be describe as follows:<br><br>
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<div class="p_font_size"><font style="font-weight:bold">Training</font></div>
1.All laboratories must be specially design and should set up strict management systems, standard operation procedures and rules.<br>
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<p>&nbsp;</p>
2.Each staff should be equipped with personal safety equipment to avoid direct contact with the pathogenic microorganism or toxic chemicals.<br>
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<div class="p_font_size">Members in our team have read the established laboratory safety principles of our school, and the topics in our safety training can be summarized as follows:</div>
3.New staffs should be well trained and should pass the experiment test before performing experiments themselves.<br>
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<p>&nbsp;</p>
4.One person at least in each laboratory should take charge of biosafety and establish a continuous biosafety training program.<br>
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<div class="p_font_size"><font style="font-weight:bold">1. Non-biological operations:</font></div>
5.Laboratories should establish emergency handling procedures and have routine inspection for all of the equipment.
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<p>&nbsp;</p>
</div>
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<div class="p_font_size">&nbsp;&nbsp;1.1 Handling toxic chemicals</div>
 
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<p>&nbsp;</p>
    <div class="img">
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<div class="p_font_size">&nbsp;&nbsp;1.2 Emergency measures(such as how to tackle fire, electric leakage and negligent wounds)</div>
      <img src="https://static.igem.org/mediawiki/2016/9/95/T--SCAU-China--safetu_03.JPG"><br><br>
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<p>&nbsp;</p>
      <img src="https://static.igem.org/mediawiki/2016/c/cf/T--SCAU-China--safetu_04.JPG">
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<div class="p_font_size">&nbsp;&nbsp;1.3 Instruments and facilities operation principles</div>
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<p>&nbsp;</p>
 
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<div class="p_font_size"><font style="font-weight:bold">2. Biological operations:</font></div>
    </div>
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<p>&nbsp;</p>
   
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<div class="p_font_size">&nbsp;&nbsp;2.1 Potential threats of our engineering bacterium (<font style="font-style:italic">Escherichia coli</font>)</div>
    <div class="vecter">
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<p>&nbsp;</p>
      <ul class="nav">
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<div class="p_font_size">&nbsp;&nbsp;2.2 Effective protection during organism operations</div>
      <a id="pcr"></a>
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<p>&nbsp;</p>
      <li><a href="#vecter">Safe Project Design</a></li>
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<div class="p_font_size">&nbsp;&nbsp;2.3 Waste materials handling measures</div>
      <li><a href="#tissue">Safe lab work</a></li>
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<p>&nbsp;</p>
      <li><a href="#pcr" class="on">Marker free</a></li>
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<div class="p_font_size">&nbsp;&nbsp;2.4 Emission rules</div>
      </ul>
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<p>&nbsp;</p>
      <div class="text">1. introduction<br><br>
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In this part, we mainly introduce the work we used cre/loxp recombination,a site-specific recombinase technology to delete the selective marker.<br><br>
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<div class="row" style="margin-top:20px">
Once “aSTARice”  is regenerated, antibiotic genes will serve no useful purprose in such plants but they continue to express these gene products. What’s more, the marker gene may cause some safety problems. As a qualified iGEMer, we attended to use the cre/loxp system to obtain the marker-free transgentic plants, which have been eliminated any marker gene DNA sequences in the final product.<br><br>
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<div class="col s6">
DNA recombination mediated by Cre recombinase has become an important tool to generate marker-free transgentic plants because it is time-specific, tissue-specific and site-specific.<br><br>
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<img alt="image" class="img-responsive col s11" src="https://static.igem.org/mediawiki/2016/0/07/T--SCAU-China--safetu_01.JPG">
The Cre/loxP system of bacterio-phage P1 is a site-specific recombination system that consists of two components:the recombinase(Cre)and its recognition sites(loxP).Cre mediates recombination events and causes the excision of the DNA segment between two directly adjacent loxP sites. Besides,The result of recombination depends on the orientation of the loxP sites. For two lox sites on the same chromosome arm, inverted loxP sites will cause an inversion of the intervening DNA, while a direct repeat of loxP sites will cause a deletion event. If loxP sites are on different chromosomes, it is possible for translocation events to be catalysed by Cre thus inducing the recombination.
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<div class="col s6">
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<div class="text">If we want to assemble an tissue-specific promoter ahead of the Cre gene, the process of delection could be regulated when we designed a direct repeat of loxP sites with the intervening marker gene. As a result, we can delete the gene wherever it is located on. By using tissue-specific promoter, we have got the marker-free pollens.
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<div class="p_font_size"><font style="font-weight:bold">Rules and Regulations</font></div>
We found Pv4, a rice anther specific promoter. When our transgentic plants grow up, the Cre gene will be expressed which should be drived by Pv4, thus only in the anther of stamens.  Hence,we got the marker-free pollens. Through selfing , we can get the homozygote of marker-free transgentic plants.
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<p>&nbsp;</p>
</div>   
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<div class="p_font_size">We have graduate students as our supervisors to ensure our operation correctness preventing safety problems. All of our team members have at least been working in a lab for 3 months and received biosafety training. The biosafety guidelines of our institution can be describe as follows:</div>
  <div class="img">
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<p>&nbsp;</p>
      <img src="https://static.igem.org/mediawiki/2016/5/50/T--SCAU-China--safetu_06.png">
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<div class="p_font_size">1. All laboratories must be specially design and should set up strict management systems, standard operation procedures and rules. </div>
      </div>
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<p>&nbsp;</p>
  <div class="text">We designed primers to primary screen the marker-free transgentic plants by PCR. However,due to the complexity of transgentic plants,it is hard to detect the marker-free process. So we designed more than one pair of primers to ensure the marker-free result.  
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<div class="p_font_size">2. Each staff should be equipped with personal safety equipment to avoid direct contact with the pathogenic microorganism or toxic chemicals.</div>
</div>   
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<p>&nbsp;</p>
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<div class="p_font_size">3. New staffs should be well trained and pass the experiment test before performing experiments themselves.</div>
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Latest revision as of 11:22, 3 December 2016

SCAU

Safety
Risk assessment

 

 

As our project is to use the rice as a factory to produce astaxanthin, and we also hope that aSTARice can serve as a kind of food in human’s daily lives one days, so we are very concerned about the safety of aSTARice.

 

We believe that risks are mainly embodied in two aspects. The frist problem is that the encoding products of marker genes might be toxic and allergenic potentially for human or livestock. Antibiotic genes might be transferred into gut microbes’ genome of humans or animals, increasing the resistance of the microbes to the antibiotic. The other one is that marker genes could spread through pollens or other ways into other organisms, which is termed gene flow. In population genetics, gene flow (also known as gene migration) is the transfer of alleles or genes from one population to another, which may lead to unimaginable damage to the ecological environment.

 

In order to reduce the effects of pollen-mediated crop-to-crop transgene flow on environment, we use a technique called selectable marker-free system, so the final aSTARice is a marker-free transgenic plants(MFTPs). We design a Cre-loxP based side-direct recombinant system to knock out hygromycin phosphotransferase gene, minimizing the effect of the selectable maker gene.

 

To further reduce the unpredictable threat of gene flow, we grow rice in pot culture and greenhouse-environment. What's more, we are also analyzing coding products by HPLC and trying to make sure that there is no harmful products in our rice.

Because we are the first team who choose rice as a chassis, we have to assess the safety for rice. Rice is the self-pollinated plant so that the genotype in the individuals is pure and homogeneous. The probabilities that two flowers take place cross-pollinated is one percent, and the distance of the spread of rice pollen is close to one meter. Rice isn’t included in the white line, so we make a checked-in on the official website.

 

 

 

Design for marker free

 

 

In this part, we used a site-specific Cre/loxP recombination to delete the selective marker. To delete the selective resistance gene in transgenic rice, a marker-free element was used to assemble into four-gene multigene vector. This marker-free element was placed between two loxP sites, and consists of a HPT (hygromycin) resistance gene expression cassette and a Cre gene expression cassette controlled by anther-specific promoter (Figure 1). When Cre gene was expressed in transgenic rice anther, the Cre enzyme deleted the marker-free element between two loxP sites. You can read more details, please click here!

 

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Figure 1   The schematic diagram of the marker-free element. PV4 is an anther-specific promoter that drives Cre gene expression in anther.

 

Laws & regulations

 

 

The credibility of the policy about “aSTARice” transgenic rice project:

 

The World Health Organization

 

In 2002, the World Health Organization claimed in"20 questions about genetically modified food". All of the genetically modified products as so far in the international market have passed the risk assessment by the national authorities. These different assessments in general follow the same basic principles, including the environment and human health risk assessment. These assessments are transparent, they did not show any risk for human health.

 

The United Nations

 

The Food and Agriculture Organization of the United Nations in 2003-2004, in "the food and agriculture condition report”clearly pointed out that the current existed modified crops and food is safe, the method used to test its safety is appropriate. So far, there is no safety accident caused by eating genetically modified crops. Millions of people eat the food derived from genetically modified crops, mainly maize, soybean and rape seed, but did not find any adverse effect.

 

The European

 

In 2009, the transgenic group of European food safety authority set out an authoritative scientific opinion about herbicide resistant and insect-resistantcrops that in terms of impact on the environment of human and animal health, gm is the same safe as non-gm, without any harm to health and the environment.

 

The United States

 

In 2010, the National Academy of Sciences of the United States claimed in “the influence on American agricultural sustainability ”. In general, compared to traditional agricultural technology for American farmers, genetically modified has created a huge environmental benefits and economic benefits.

 

The World Health Organization, the Food and Agriculture Organization of the United Nations, the US Food and Drug Administration and other international organizations and authorities have said the current approval of commercialization of transgenic food is safe and edible.

 

China

 

The Chinese government attaches great importance to the management work of the safety of agricultural genetically modified organisms, has formed a set of law which is suitable for China's national situation and consistent with international convention of laws and regulations, technical regulations and management system. As a result,it has achieved remarkable results in accordance with the implementation of safety management.

 

1. The legal system: the agricultural genetically modified organisms safety management regulations, the measures for the administration of agricultural genetically modified organisms safety assessment, the safety measures for the administration of import of agricultural genetically modified organisms, the identification measures for the administration of agricultural genetically modified organisms, the agricultural genetically modified organisms processing measures for examination and approval, the inspection and quarantine measures for the administration of entry and exit of genetically modified products.

 

2. The administrative management system: joint inter-ministerial meeting, agricultural genetically modified organisms safety management leading group, the provincial administrative department of agriculture, municipal (county) level administrative department of agriculture.

 

3. Technical support system, safety evaluation, detection, monitoring and technical standards.

 

Lab work

 

Training

 

Members in our team have read the established laboratory safety principles of our school, and the topics in our safety training can be summarized as follows:

 

1. Non-biological operations:

 

  1.1 Handling toxic chemicals

 

  1.2 Emergency measures(such as how to tackle fire, electric leakage and negligent wounds)

 

  1.3 Instruments and facilities operation principles

 

2. Biological operations:

 

  2.1 Potential threats of our engineering bacterium (Escherichia coli)

 

  2.2 Effective protection during organism operations

 

  2.3 Waste materials handling measures

 

  2.4 Emission rules

 

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Rules and Regulations

 

We have graduate students as our supervisors to ensure our operation correctness preventing safety problems. All of our team members have at least been working in a lab for 3 months and received biosafety training. The biosafety guidelines of our institution can be describe as follows:

 

1. All laboratories must be specially design and should set up strict management systems, standard operation procedures and rules.

 

2. Each staff should be equipped with personal safety equipment to avoid direct contact with the pathogenic microorganism or toxic chemicals.

 

3. New staffs should be well trained and pass the experiment test before performing experiments themselves.
4. One person at least in each laboratory should take charge of biosafety and establish a continuous biosafety training program.

 

5. Laboratories should establish emergency handling procedures and have routine inspection for all of the equipment.

 

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