Difference between revisions of "Team:Tel-Hai/Description"

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<h3>Introduction</h3>
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<h3>Description</h3>
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<p>The CFTR gene encodes an ATP-binding cassette (ABC) transporter that functions as a low conductance Cl(-)-selective channel gated by cycles of ATP binding and hydrolysis at its nucleotide-binding domains (NBDs) and regulated tightly by an intrinsically disordered protein segment distinguished by multiple consensus phosphorylation sites termed the regulatory domain</p>
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— <cite>Summary by Wang et al., 2014</cite>
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<p>Cystic fibrosis (CF) is the most common lethal genetic disorder in Caucasian populations. It affects mostly the lungs, and also the pancreas, liver and kidneys. The CF disorder is a result of mutations in a gene coding for an ATP-gated ion channel called cystic fibrosis trans membrane conductance regulator - CFTR. Nearly two thousand cystic fibrosis causing mutations in the CFTR gene have been described. The most common mutation is ΔF508, which results from a deletion of three nucleotides, and a consequent loss of the amino acid phenylalanine. A CFTRΔF508 protein is unable to leave the endoplasmic reticulum (ER) and translocate to the plasma membrane.</p>
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<h3>Cystic fibrosis (CF)</h3>
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<p>CF is a genetic disorder that affects mostly the lungs, but also the pancreas, liver, kidneys, and intestine. Long-term issues include difficulty breathing and coughing up mucus as a result of frequent lung infections. Other signs and symptoms include sinus infections, poor growth, fatty stool, clubbing of the fingers and toes, and infertility in males, among others. </p>
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<p>CF is caused by a mutation in the gene cystic fibrosis transmembrane conductance regulator (CFTR). The most common mutation, ΔF508, is a deletion (Δ signifying deletion) of three nucleotides that results in a loss of the amino acid phenylalanine (F) at the 508th position on the protein. This mutation accounts for two-thirds (66–70%) of CF cases worldwide and 90% of cases in the United States; however, over 1500 other mutations can produce CF.</p>
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<p>There is no known cure for Cystic Fibrosis. Lung infections are treated with antibiotics which may be given intravenously, inhaled, or orally. People with the disease take between 50-80 medications per day, and on a daily basis partake in physical therapy in order to facilitate the lungs, inhalation treatments to relieve respiratory distress, and are hospitalized every couple of months.</p>
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<p>Over the years, many drugs have been developed to help patients cope with symptoms and increase life expectancy. However, survival age is still only 40 years, as of 2015. In other words, these people are born with the knowledge that they will not have a long life.</p>
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<div class="image-holder"><img src="/wiki/images/7/79/T--Tel-Hai--des3.png" /></div>
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<p>Our group has focused on solving the root cause i.e. correcting the CFTR mutation. Thus, we were looking for gene editing technology.</p>.
  
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<p>There is yet no cure for cystic fibrosis, and today CF patients suffering lung infections are treated with antibiotics. Excessive mucus blocking the lungs is removed by mucus thinning drugs and physical exercises. Previous research has demonstrated that the CRISPR technology has the potential to provide a successful treatment for CF. However; this potential has not yet been realized due to the lack of an efficient delivery vehicle which can specifically target, in vivo, the epithelium of the airways and lungs. Therefore, we wish to suggest a new way of targeting the CRISPR components in order to fix the ΔF508 mutation, as described below.</p>
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<h3>CRISPR / Cas9</h3>
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<p>The CRISPR/Cas system is a prokaryotic immune system that confers resistance to foreign genetic elements and provides a form of acquired immunity. CRISPR associated proteins (Cas) use the CRISPR spacers to recognize and cut these exogenous genetic elements in a manner analogous to RNA interference in eukaryotic organisms.</p>
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<p>By delivering the Cas9 nuclease and appropriate guide RNAs into a cell, the cell's genome can be cut at a desired location, allowing existing genes to be removed and/or new ones added by homologous recombination resulting the correction of CFTR mutation.</p>
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<div class="image-holder"><img src="/wiki/images/7/79/T--Tel-Hai--des4.png" /></div>
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<p>Next, our group though about a way to deliver CRISPR/Cas9 into the mutated cells.</p>
  
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<h3>Cholera Toxin (CT)</h3>
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<p>The B subunit of the toxin produced by the pathogenic bacterium Vibrio cholera can specifically bind the GM1-like ganglioside receptor on the membrane of epithelial cells – including the asialo-GM1 variant that line the lungs. This binding leads to internalization of the toxin by endocytosis. We, therefore, intend to use this B subunit as a vehicle to specifically deliver the CRISPR/Cas9 expression plasmid into the epithelium of the lungs of CF patients. The CRISPR/Cas9 plasmid will be attached to the B subunit by a cleavable linker and the conjugated molecules will be applied by aerosol spray to the nose. A special “repair template”, designed to replace the ΔF508 mutation by the correct sequence (via homology directed repair - HDR) will also be delivered into the cells by this B subunit in a similar way. Both DNA molecules will be delivered as naked DNA.</p>
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<p>CT is composed of two molecular subunits: Cholera toxin subunit A (CTA) and B (CTB). CTA is responsible for the toxic effect, whereas the non-toxic subunit B is responsible for the internalization and transport of the toxin into the cell. </p>
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<p>CTB is highly specific to epithelial cells (those are the mutated cells in CF). With its ability to bind the ganglioside receptor (GM1) in the epithelial cell membrane, we believe it will becomes a successful carrier for introducing the plasmids of the CRISPR in to the cells.</p>
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<p>In this project, we are combining these three elements together to develop a delivery system that can cure Cystic Fibrosis with a single treatment.</p>
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Revision as of 11:17, 19 October 2016

iGEM Tel-Hai 2016

Description

Cystic fibrosis (CF)

CF is a genetic disorder that affects mostly the lungs, but also the pancreas, liver, kidneys, and intestine. Long-term issues include difficulty breathing and coughing up mucus as a result of frequent lung infections. Other signs and symptoms include sinus infections, poor growth, fatty stool, clubbing of the fingers and toes, and infertility in males, among others.

CF is caused by a mutation in the gene cystic fibrosis transmembrane conductance regulator (CFTR). The most common mutation, ΔF508, is a deletion (Δ signifying deletion) of three nucleotides that results in a loss of the amino acid phenylalanine (F) at the 508th position on the protein. This mutation accounts for two-thirds (66–70%) of CF cases worldwide and 90% of cases in the United States; however, over 1500 other mutations can produce CF.

There is no known cure for Cystic Fibrosis. Lung infections are treated with antibiotics which may be given intravenously, inhaled, or orally. People with the disease take between 50-80 medications per day, and on a daily basis partake in physical therapy in order to facilitate the lungs, inhalation treatments to relieve respiratory distress, and are hospitalized every couple of months.

Over the years, many drugs have been developed to help patients cope with symptoms and increase life expectancy. However, survival age is still only 40 years, as of 2015. In other words, these people are born with the knowledge that they will not have a long life.

Our group has focused on solving the root cause i.e. correcting the CFTR mutation. Thus, we were looking for gene editing technology.

.

CRISPR / Cas9

The CRISPR/Cas system is a prokaryotic immune system that confers resistance to foreign genetic elements and provides a form of acquired immunity. CRISPR associated proteins (Cas) use the CRISPR spacers to recognize and cut these exogenous genetic elements in a manner analogous to RNA interference in eukaryotic organisms.

By delivering the Cas9 nuclease and appropriate guide RNAs into a cell, the cell's genome can be cut at a desired location, allowing existing genes to be removed and/or new ones added by homologous recombination resulting the correction of CFTR mutation.

Next, our group though about a way to deliver CRISPR/Cas9 into the mutated cells.

Cholera Toxin (CT)

CT is composed of two molecular subunits: Cholera toxin subunit A (CTA) and B (CTB). CTA is responsible for the toxic effect, whereas the non-toxic subunit B is responsible for the internalization and transport of the toxin into the cell.

CTB is highly specific to epithelial cells (those are the mutated cells in CF). With its ability to bind the ganglioside receptor (GM1) in the epithelial cell membrane, we believe it will becomes a successful carrier for introducing the plasmids of the CRISPR in to the cells.

In this project, we are combining these three elements together to develop a delivery system that can cure Cystic Fibrosis with a single treatment.