Difference between revisions of "Team:Stony Brook/Notebook/Cancer-W6"

Line 246: Line 246:
 
<li> Ryan 4 </li>
 
<li> Ryan 4 </li>
 
</ol>
 
</ol>
 +
 +
<h6> Digest of Miniprepped Plasmids </h6>
 +
</div>
 +
 +
<div class="column half_size">
 +
<div align="center">
 +
<h5> Veronica 1 - 311.5 ng/ul </h5>
 +
</div>
 +
<ul>
 +
<table>
 +
<tr>
 +
<th> Content </th>
 +
<th> Experimental (ul) </th>
 +
<th> Control (ul) </th>
 +
</tr>
 +
<tr>
 +
<td> H<sub>2</sub>O</td>
 +
<td> 40.8 </td>
 +
<td> 41.8 </td>
 +
</tr>
 +
<tr>
 +
<td> Cutsmart </td>
 +
<td> 5</td>
 +
<td> 5 </td>
 +
</tr>
 +
<tr>
 +
<td> XbaI </td>
 +
<td> 0.5 </td>
 +
<td> X </td>
 +
</tr>
 +
<tr>
 +
<td> PvuII-HF </td>
 +
<td> 0.5 </td>
 +
<td> X </td>
 +
</tr>
 +
<tr>
 +
<td> DNA </td>
 +
<td> 3.21</td>
 +
<td> 3.21 </td>
 +
</tr>
 +
</table>
 +
</ul>
 +
</div>
 +
 +
<div class="column half_size">
 +
<div align="center">
 +
<h5> Ryan 4 - 366.6 ng/ul </h5>
 +
</div>
 +
<ul>
 +
<table>
 +
<tr>
 +
<th> Content </th>
 +
<th> Experimental (ul) </th>
 +
<th> Control (ul) </th>
 +
</tr>
 +
<tr>
 +
<td> H<sub>2</sub>O</td>
 +
<td> 41.3 </td>
 +
<td> 42.3 </td>
 +
</tr>
 +
<tr>
 +
<td> Cutsmart </td>
 +
<td> 5</td>
 +
<td> 5 </td>
 +
</tr>
 +
<tr>
 +
<td> XbaI </td>
 +
<td> 0.5 </td>
 +
<td> X </td>
 +
</tr>
 +
<tr>
 +
<td> PvuII-HF </td>
 +
<td> 0.5 </td>
 +
<td> X </td>
 +
</tr>
 +
<tr>
 +
<td> DNA </td>
 +
<td> 2.73</td>
 +
<td> 2.73 </td>
 +
</tr>
 +
</table>
 +
</ul>
 +
</div>

Revision as of 21:28, 3 August 2016

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Week 4: 8/1-8/5

8/1-8/9

8/1

Emmanuel Ligation (193 ng/ul)
    Content Experimental (ul) Control (ul)
    H2O 38.8 39.8
    Cutsmart 5.0 5.0
    XbaI 0.5 X
    EcoRI-HF 0.5 X
    DNA 5.18 5.18

Gel run

Lanes:

  1. Ladder
  2. Emmanuel Digest Control
  3. Emmanuel Digest Experimental
  • Did not work

25 ul Digest of Ryan + Emmanuel (Veronica) Miniprep
  • Made 17 LB With Ampicillin (600ml)
Ryan - 446.4 ng/ul
    Content Experimental (ul) Control (ul)
    H2O 20.4 21.4
    Cutsmart 2.5 2.5
    XbaI 0.5 X
    EcoRI-HF 0.5 X
    DNA 1.12 1.12
Emmanuel - 193 ng/ul
    Content Experimental (ul) Control (ul)
    H2O 18.9 19.9
    Cutsmart 2.5 2.5
    XbaI 0.5 X
    EcoRI-HF 0.5 X
    DNA 2.59 2.59

8/2

Miniprep
  • Miniprep of ligated construct
  • 10,000rpm for 3 minutes at 25°C
Ran a nanodrop of Minipreps
    Content Concentration (ng/ul) 260/280
    Veronica 1 311.5 1.86
    Veronica 2 43.8 1.76
    Veronica 3 259 1.88
    Veronica 4 296 1.88
    R1 176.5 1.75
    Ryan 2 277.3 1.85
    Ryan 3 301.6 1.81
    Ryan 4 366.6 1.82
Ran a gel of miniprepped plasmids
  • Used 5ul of DNA and 1 ul of dye

Lanes:

  1. Veronica 1
  2. Veronica 3
  3. Veronica 4
  4. Ladder
  5. Ryan 1
  6. Ryan 2
  7. Ryan 3
  8. Ryan 4
Digest of Miniprepped Plasmids
Veronica 1 - 311.5 ng/ul
    Content Experimental (ul) Control (ul)
    H2O 40.8 41.8
    Cutsmart 5 5
    XbaI 0.5 X
    PvuII-HF 0.5 X
    DNA 3.21 3.21
Ryan 4 - 366.6 ng/ul
    Content Experimental (ul) Control (ul)
    H2O 41.3 42.3
    Cutsmart 5 5
    XbaI 0.5 X
    PvuII-HF 0.5 X
    DNA 2.73 2.73