Difference between revisions of "Team:Groningen/Model"

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<h>Random mutations in <em>Bacillus subtilis</em> </h2>
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<h2>Random mutations in <em>Bacillus subtilis</em> </h2>
 
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under the special conditions and treatments that will be applied.  
 
under the special conditions and treatments that will be applied.  
  
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<p><ul><li><a href="/Team:Groningen/MutationRates">Read more about the <em>Bacillus subtilis</em> mutation rates.
 
<p><ul><li><a href="/Team:Groningen/MutationRates">Read more about the <em>Bacillus subtilis</em> mutation rates.
 
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<h>Random mutations modelling</h2>
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<h2>Random mutations modelling</h2>
 
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<h>Decoding fidelity</h2>
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<h2>Decoding fidelity</h2>
 
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<h>Searching for an optimal strain</h2>
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<h2>Searching for an optimal strain</h2>
 
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Revision as of 11:57, 19 October 2016

CryptoGE®M
Team
Project
Biology
Computing
Human Practice
Acknowledgements

Modelling

We modelled several aspects of the CryptoGErM system. These models are described and explained in detail in the following articles:

Belief-Desire-Intention

The AI model explores the behaviour of the people who use, or try to abuse, the CryptoGErM system. The people are modelled in a multi-agent simulation using genetic algorithms. This model helps us to predict the and intentions of the users and intruders of our system.

Random mutations in Bacillus subtilis

The data stored in the CryptoGErM system might be endangered by random mutations in the DNA. This article contains research of the literature on known mutation rates of Bacillus under the special conditions and treatments that will be applied.

Random mutations modelling

In this section we computationally modelled the probaility of random mutation causing our message in the DNA to be corrupted.

Decoding fidelity

In the decoding fidelity section we explore how accurate the current sequencing techniques are and how strong our decoy encryption security layer is.

Searching for an optimal strain

We modelled the protein-DNA interactions in oder to search for an optimal strain for our photoswitchable antibiotic experiments.


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