Difference between revisions of "Team:Groningen/Model"

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<p>
  
<div class="split"><div class="right flone">The data stored in the CryptoGErM system
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<div class="split"><div class="right fltwo">The data stored in the CryptoGErM system
 
might be endangered by random mutations in the DNA.
 
might be endangered by random mutations in the DNA.
 
This article contains research of the literature on known mutation rates of <em>B. subtilis</em>  
 
This article contains research of the literature on known mutation rates of <em>B. subtilis</em>  
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<div class="split"><div class="left flone">In this section we computationally modelled
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<div class="split"><div class="left fltwo">In this section we computationally modelled
 
the probaility of random mutation causing our message in the DNA to be corrupted.
 
the probaility of random mutation causing our message in the DNA to be corrupted.
  
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<div class="right flone"><ihttps://static.igem.org/mediawiki/2016/2/20/T--Groningen---modelling---whatifmutation-.jpeg" /></div></div>
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<div class="right flone"><img src="https://static.igem.org/mediawiki/2016/2/20/T--Groningen---modelling---whatifmutation-.jpeg" /></div></div>
  
 
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<div class="split"><div class="right flone">In the decoding fidelity section we explore how accurate the current sequencing techniques  
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<div class="split"><div class="right fltwo">In the decoding fidelity section we explore how accurate the current sequencing techniques  
 
are and how strong our decoy encryption security layer is.
 
are and how strong our decoy encryption security layer is.
  

Revision as of 12:13, 19 October 2016

CryptoGE®M
Team
Project
Biology
Computing
Human Practice
Acknowledgements

Modelling

We modelled several aspects of the CryptoGErM system. These models are described and explained in detail in the following articles:

Belief-Desire-Intention

The AI model explores the behaviour of the people who use, or try to abuse, the CryptoGErM system. The people are modelled in a multi-agent simulation using genetic algorithms. This model helps us to predict the and intentions of the users and intruders of our system.

Random mutations in Bacillus subtilis

The data stored in the CryptoGErM system might be endangered by random mutations in the DNA. This article contains research of the literature on known mutation rates of B. subtilis under the special conditions and treatments that will be applied.

Random mutations modelling

In this section we computationally modelled the probaility of random mutation causing our message in the DNA to be corrupted.

Decoding fidelity

In the decoding fidelity section we explore how accurate the current sequencing techniques are and how strong our decoy encryption security layer is.

Searching for an optimal strain

We modelled the protein-DNA interactions in oder to search for an optimal strain for our photoswitchable antibiotic experiments.


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