Difference between revisions of "Team:EPFL/Parts"

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            <section class="">
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                <div class="container">
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                    <div class="col-md-10 col-md-offset-1 animate-box">
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                        <h2 class="lead text-center">Parts</h2>
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                        <div class="spacer h20"></div>
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                        <p class="sub-lead">
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                            Here are all the parts we biobricked during summer!
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                        </p>
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                        <table class="table table-striped">
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                            <thead>
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                                <tr>
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                                    <th>Part name</th>
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                                    <th>Description</th>
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                                    <th>Type</th>
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                                    <th>Length</th>
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                                    <th>Part number</th>
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                                </tr>
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                            </thead>
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                            <tbody class="">
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                                <tr>
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                                    <td>PCP_Mxi1</td>
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                                    <td>RNA binding protein PCP fused to the transcriptional repression domain Mxi1</td>
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                                    <td>Coding</td>
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                                    <td>495 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941000"> BBa_K1941000 </a></td>
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                                </tr>
  
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                                <tr>
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                                    <td>scTef1_PP7</td>
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                                    <td>Scaffold RNA (scRNA) with PP7 hairpin that targets TEF1 promoter</td>
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                                    <td>RNA</td>
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                                    <td>130 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941001"> BBa_K1941001 </a></td>
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                                </tr>
  
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                                <!--1-->
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                                <tr>
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                                    <td>scTef1_2PP7</td>
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                                    <td>Scaffold RNA (scRNA), with two times the PP7 hairpin, targeting TEF1</td>
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                                    <td>RNA</td>
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                                    <td>186 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941002"> BBa_K1941002 </a></td>
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                                </tr>
  
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                                <tr>
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                                    <td>scTef1_2PP7</td>
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                                    <td>Scaffold RNA (scRNA), with two times the PP7 hairpin, targeting TEF1</td>
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                                    <td>RNA</td>
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                                    <td>186 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941003"> BBa_K1941003 </a></td>
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                                </tr>
  
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                                <!--2-->
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                                <tr>
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                                    <td>scCyc1_PP7</td>
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                                    <td>Scaffold RNA with PP7 hairpin that targets the region c6 of CYC1 promoter</td>
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                                    <td>RNA</td>
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                                    <td>246 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941004"> BBa_K1941004 </a></td>
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                                </tr>
  
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                                <tr>
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                                    <td>scCyc1_2PP7</td>
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                                    <td>Scaffold RNA with two PP7 hairpins that targets the region c6 of CYC1 promoter</td>
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                                    <td>RNA</td>
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                                    <td>296 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941004"> BBa_K1941004 </a></td>
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                                </tr>
  
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                                <tr>
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                                    <td>scCyc1_MS2</td>
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                                    <td>Scaffold RNA with MS2 hairpin that targets the region c3 of CYC1 promoter</td>
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<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
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                                    <td>RNA</td>
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<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
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                                    <td>236 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941005"> BBa_K1941005 </a></td>
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                                </tr>
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<div class="column half_size">
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<div class="highlight">
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<h5>Note</h5>
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<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
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<div class="column half_size">
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<h5>Adding parts to the registry</h5>
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<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
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<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
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<div class="column half_size">
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<h5>What information do I need to start putting my parts on the Registry?</h5>
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<p>The information needed to initially create a part on the Registry is:</p>
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<ul>
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<li>Part Name</li>
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<li>Part type</li>
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<li>Creator</li>
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<li>Sequence</li>
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<li>Short Description (60 characters on what the DNA does)</li>
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<li>Long Description (Longer description of what the DNA does)</li>
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<li>Design considerations</li>
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</ul>
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<p>
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We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
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</div>
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<div class="column half_size">
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<h5>Inspiration</h5>
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<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
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<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
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<ul>
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<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
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<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
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<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
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</ul>
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</div>
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<div class="column full_size">
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<h5>Part Table </h5>
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<div class="highlight">
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</html>
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<groupparts>iGEM2016 Example</groupparts>
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</div>
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</div>
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                                <tr>
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                                    <td>sgRNA for c6_TDH3 (1)</td>
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                                    <td>sgRNA that targets the TDH3 promoter</td>
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                                    <td>RNA</td>
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                                    <td>211 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941006"> BBa_K1941006 </a></td>
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                                </tr>
  
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                                <tr>
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                                    <td>sgRNA for c6_TDH3 (2)</td>
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                                    <td>sgRNA that targets the TDH3 promoter</td>
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                                    <td>RNA</td>
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                                    <td>211 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941007"> BBa_K1941007 </a></td>
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                                </tr>
  
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                                <tr>
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                                    <td>sgRNA for c6_TDH3 (3)</td>
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                                    <td>sgRNA that targets the TDH3 promoter</td>
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                                    <td>RNA</td>
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                                    <td>211 bp</td>
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                                    <td><a target="_blank" href="http://parts.igem.org/Part:BBa_K1941008"> BBa_K1941008 </a></td>
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                                </tr>
  
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                            </tbody>
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                        </table>
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                    </div>
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                </div>
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            </section>
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        </div>
 
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{{RISE_foot}}

Revision as of 01:59, 20 October 2016

iGEM EPFL 2016

Parts

Here are all the parts we biobricked during summer!

Part name Description Type Length Part number
PCP_Mxi1 RNA binding protein PCP fused to the transcriptional repression domain Mxi1 Coding 495 bp BBa_K1941000
scTef1_PP7 Scaffold RNA (scRNA) with PP7 hairpin that targets TEF1 promoter RNA 130 bp BBa_K1941001
scTef1_2PP7 Scaffold RNA (scRNA), with two times the PP7 hairpin, targeting TEF1 RNA 186 bp BBa_K1941002
scTef1_2PP7 Scaffold RNA (scRNA), with two times the PP7 hairpin, targeting TEF1 RNA 186 bp BBa_K1941003
scCyc1_PP7 Scaffold RNA with PP7 hairpin that targets the region c6 of CYC1 promoter RNA 246 bp BBa_K1941004
scCyc1_2PP7 Scaffold RNA with two PP7 hairpins that targets the region c6 of CYC1 promoter RNA 296 bp BBa_K1941004
scCyc1_MS2 Scaffold RNA with MS2 hairpin that targets the region c3 of CYC1 promoter RNA 236 bp BBa_K1941005
sgRNA for c6_TDH3 (1) sgRNA that targets the TDH3 promoter RNA 211 bp BBa_K1941006
sgRNA for c6_TDH3 (2) sgRNA that targets the TDH3 promoter RNA 211 bp BBa_K1941007
sgRNA for c6_TDH3 (3) sgRNA that targets the TDH3 promoter RNA 211 bp BBa_K1941008