Difference between revisions of "Team:UCC Ireland/Demonstrate"

Line 2: Line 2:
  
 
<html lang="en" xmlns="http://www.w3.org/1999/html">
 
<html lang="en" xmlns="http://www.w3.org/1999/html">
<head>
+
  <head>
  <meta charset="utf-8">
+
    <meta charset="utf-8">
  <meta http-equiv="X-UA-Compatible" content="IE=edge">
+
    <meta http-equiv="X-UA-Compatible" content="IE=edge">
  <meta name="viewport" content="width=device-width, initial-scale=1">
+
    <meta name="viewport" content="width=device-width, initial-scale=1">
  <!-- The above 3 meta tags *must* come first in the head; any other head content must come *after* these tags -->
+
    <!-- The above 3 meta tags *must* come first in the head; any other head content must come *after* these tags -->
  
  <title>UCC iGEM</title>
+
    <title>UCC iGEM</title>
  
  <!-- Bootstrap core CSS -->
+
    <!-- Bootstrap core CSS -->
  <link rel="stylesheet" href="https://2016.igem.org/Template:Team:UCC_Ireland/CSS?action=raw&amp;ctype=text/css">
+
    <link rel="stylesheet" href="https://2016.igem.org/Template:Team:UCC_Ireland/CSS?action=raw&amp;ctype=text/css">
  
  <script src="https://2016.igem.org/Template:Team:UCC_Ireland/JS?action=raw&amp;ctype=text/javascript"></script>
+
    <script src="https://2016.igem.org/Template:Team:UCC_Ireland/JS?action=raw&amp;ctype=text/javascript"></script>
 +
   
 +
  </head>
  
</head>
+
  <body>
 
+
    <div class="container-full">
<body>
+
      <nav class="navbar navbar-inverse navbar-fixed-top">
<div class="container-full">
+
        <div class="container">
  <nav class="navbar navbar-inverse navbar-fixed-top">
+
          <div class="navbar-header">
    <div class="container">
+
            <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
      <div class="navbar-header">
+
              <span class="sr-only">Toggle navigation</span>
        <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+
              <span class="icon-bar"></span>
          <span class="sr-only">Toggle navigation</span>
+
              <span class="icon-bar"></span>
          <span class="icon-bar"></span>
+
              <span class="icon-bar"></span>
          <span class="icon-bar"></span>
+
            </button>
          <span class="icon-bar"></span>
+
              <a class="navbar-brand" href="https://2016.igem.org/Team:UCC_Ireland"><img style="height: 80px;" src="https://static.igem.org/mediawiki/2016/a/a3/LIMITLESSLACTIS-WHITE.png" alt=""></a>
        </button>
+
          </div>
        <a class="navbar-brand" href="https://2016.igem.org/Team:UCC_Ireland"><img style="height: 80px;" src="https://static.igem.org/mediawiki/2016/a/a3/LIMITLESSLACTIS-WHITE.png" alt=""></a>
+
          <div id="navbar" class="navbar-collapse collapse">
      </div>
+
            <ul class="nav navbar-nav">
      <div id="navbar" class="navbar-collapse collapse">
+
              <li class="active"><a href="https://2016.igem.org/Team:UCC_Ireland">Home</a></li>
        <ul class="nav navbar-nav">
+
              <li class="dropdown">
          <li><a href="https://2016.igem.org/Team:UCC_Ireland">Home</a></li>
+
                <a class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Project<span class="caret"></span></a>
          <li class="dropdown active">
+
                <ul class="dropdown-menu">
            <a class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Project<span class="caret"></span></a>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Limitless_Lactis">Limitless Lactis</a></li>
            <ul class="dropdown-menu">
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/iRFP">iRFP In-Vitro Reporter</a></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Limitless_Lactis">Limitless Lactis</a></li>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Leishmaniasis">Leishmaniasis</a></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/iRFP">iRFP In-Vitro Reporter</a></li>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Proof">Proof</a></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Leishmaniasis">Leishmaniasis</a></li>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Demonstrate">Demonstrate</a></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Proof">Proof</a></li>
+
                </ul>
              <li class="active"><a href="https://2016.igem.org/Team:UCC_Ireland/Demonstrate">Demonstrate</a></li>
+
              </li>
            </ul>
+
              <li class="dropdown">
          </li>
+
                <a class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Outreach<span class="caret"></span></a>
          <li class="dropdown">
+
                <ul class="dropdown-menu">
            <a class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Outreach<span class="caret"></span></a>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/HP/Silver">HP Silver</a></li>
            <ul class="dropdown-menu">
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/HP/Gold">HP Gold</a></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/HP/Silver">HP Silver</a></li>
+
                  <li role="separator" class="divider"></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/HP/Gold">HP Gold</a></li>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Engagement">Engagement</a></li>
              <li role="separator" class="divider"></li>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Integrated_Practices">Integrated Practices</a></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Engagement">Engagement</a></li>
+
                </ul>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Integrated_Practices">Integrated Practices</a></li>
+
              </li>
            </ul>
+
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Team">Team</a></li>
          </li>
+
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Notebook">Notes</a></li>
          <li><a href="https://2016.igem.org/Team:UCC_Ireland/Team">Team</a></li>
+
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Parts">Parts</a></li>
          <li><a href="https://2016.igem.org/Team:UCC_Ireland/Notebook">Notes</a></li>
+
              <li class="dropdown">
          <li><a href="https://2016.igem.org/Team:UCC_Ireland/Parts">Parts</a></li>
+
                <a class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Collaborations<span class="caret"></span></a>
          <li class="dropdown">
+
                <ul class="dropdown-menu">
            <a class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Collaborations<span class="caret"></span></a>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Collaborations">iGEM Teams</a></li>
            <ul class="dropdown-menu">
+
                  <li role="separator" class="divider"></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Collaborations">iGEM Teams</a></li>
+
                  <li class="dropdown-header">Synenergene</li>
              <li role="separator" class="divider"></li>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Application_Scenario">Application Scenario</a></li>
              <li class="dropdown-header">Synenergene</li>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Techno_Moral_Newsletter">Techno-Moral Newsletter</a></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Application_Scenario">Application Scenario</a></li>
+
                  <li><a href="https://2016.igem.org/Team:UCC_Ireland/Blog.html">Techno-Moral Blog</a></li>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Techno_Moral_Newsletter">Techno-Moral Newsletter</a></li>
+
                </ul>
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Blog.html">Techno-Moral Blog</a></li>
+
              </li>
 +
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Interlab_Study">Interlab</a></li>
 +
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Achievements">Achievements</a></li>
 +
              <li><a href="https://2016.igem.org/Team:UCC_Ireland/Attributions">Attributions</a></li>
 
             </ul>
 
             </ul>
           </li>
+
           </div>
          <li><a href="https://2016.igem.org/Team:UCC_Ireland/Interlab_Study">Interlab</a></li>
+
         </div>
          <li><a href="https://2016.igem.org/Team:UCC_Ireland/Achievements">Achievements</a></li>
+
       </nav>
          <li><a href="https://2016.igem.org/Team:UCC_Ireland/Attributions">Attributions</a></li>
+
      <div class="container-fluid fix-nav-padding-top">
         </ul>
+
<div class="container">
       </div>
+
<h1>Demonstration in a real world setting</h1>
    </div>
+
  </nav>
+
  <div class="container-fluid fix-nav-padding-top">
+
  
 +
<h2>Introduction</h2>
  
    <div class="container">
+
<p>Following oral delivery of the vaccine to the body, the bacteria will travel down through the GI tract. It is here that they will cross the epithelial layer and encounter M cells in the Peyer&rsquo;s patches in the MALT (mucosa associated lymphoid tissue). At the peyer&rsquo;s patches, the bacteria can be phagocytosed by nearby antigen presenting cells (APCs). These APCs will sample the antigen and may present this antigen to B &amp; T cells and therefore cause an immune response. </p>
      <p><html lang=&quot;en&quot; xmlns=&quot;http://www.w3.org/1999/html&quot;>  <head>  <meta charset=&quot;utf-8&quot;>  <meta http-equiv=&quot;X-UA-Compatible&quot; content=&quot;IE=edge&quot;>  <meta name=&quot;viewport&quot; content=&quot;width=device-width, initial-scale=1&quot;>  <!-- The above 3 meta tags *must* come first in the head; any other head content must come *after* these tags --></p>
+
  
      <p> <title>UCC iGEM</title></p>
+
<img src="https://static.igem.org/mediawiki/2016/f/fc/T--UCC_Ireland--irfp-1.png" class="img-responsive">
  
      <p> <!-- Bootstrap core CSS -->  <link rel=&quot;stylesheet&quot; href=&quot;https://2016.igem.org/Template:Team:UCC_Ireland/CSS?action=raw&amp;amp;ctype=text/css&quot;></p>
+
<h2>Method </h2>
  
      <p> <script src=&quot;https://2016.igem.org/Template:Team:UCC_Ireland/JS?action=raw&amp;amp;ctype=text/javascript&quot;></script>    </head></p>
+
<p>To mimic these real world conditions, we aimed to use a mouse macrophage cell line (RAW 264.7) to demonstrate that our bacteria can present protein to the cytosol of the macrophage following phagocytosis (where, if it is an antigenic protein, it will be processed through the proteasomal degradation pathway and be presented on the cell surface bound to MHC class II molecules). </p>
  
      <p> <body>  <div class=&quot;container-full&quot;>  <nav class=&quot;navbar navbar-inverse navbar-fixed-top&quot;>  <div class=&quot;container&quot;>  <div class=&quot;navbar-header&quot;>  <button type=&quot;button&quot; class=&quot;navbar-toggle collapsed&quot; data-toggle=&quot;collapse&quot; data-target=&quot;#navbar&quot; aria-expanded=&quot;false&quot; aria-controls=&quot;navbar&quot;>  <span class=&quot;sr-only&quot;>Toggle navigation</span>  <span class=&quot;icon-bar&quot;></span>  <span class=&quot;icon-bar&quot;></span>  <span class=&quot;icon-bar&quot;></span>  </button>  <a class=&quot;navbar-brand&quot; href=&quot;https://2016.igem.org/Team:UCC_Ireland&quot;><img style=&quot;height: 80px;&quot; src=&quot;https://static.igem.org/mediawiki/2016/a/a3/LIMITLESSLACTIS-WHITE.png&quot; alt=&quot;&quot;></a>  </div>  <div id=&quot;navbar&quot; class=&quot;navbar-collapse collapse&quot;>  <ul class=&quot;nav navbar-nav&quot;>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland&quot;>Home</a></li>  <li class=&quot;dropdown active&quot;>  <a class=&quot;dropdown-toggle&quot; data-toggle=&quot;dropdown&quot; role=&quot;button&quot; aria-haspopup=&quot;true&quot; aria-expanded=&quot;false&quot;>Project<span class=&quot;caret&quot;></span></a>  <ul class=&quot;dropdown-menu&quot;>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Limitless_Lactis&quot;>Limitless Lactis</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/iRFP&quot;>iRFP In-Vitro Reporter</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Leishmaniasis&quot;>Leishmaniasis</a></li>  <li class=&quot;active&quot;><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Proof&quot;>Proof</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Demonstrate&quot;>Demonstrate</a></li>  </ul>  </li>  <li class=&quot;dropdown&quot;>  <a class=&quot;dropdown-toggle&quot; data-toggle=&quot;dropdown&quot; role=&quot;button&quot; aria-haspopup=&quot;true&quot; aria-expanded=&quot;false&quot;>Outreach<span class=&quot;caret&quot;></span></a>  <ul class=&quot;dropdown-menu&quot;>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/HP/Silver&quot;>HP Silver</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/HP/Gold&quot;>HP Gold</a></li>  <li role=&quot;separator&quot; class=&quot;divider&quot;></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Engagement&quot;>Engagement</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Integrated_Practices&quot;>Integrated Practices</a></li>  </ul>  </li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Team&quot;>Team</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Notebook&quot;>Notes</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Parts&quot;>Parts</a></li>  <li class=&quot;dropdown&quot;>  <a class=&quot;dropdown-toggle&quot; data-toggle=&quot;dropdown&quot; role=&quot;button&quot; aria-haspopup=&quot;true&quot; aria-expanded=&quot;false&quot;>Collaborations<span class=&quot;caret&quot;></span></a>  <ul class=&quot;dropdown-menu&quot;>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Collaborations&quot;>iGEM Teams</a></li>  <li role=&quot;separator&quot; class=&quot;divider&quot;></li>  <li class=&quot;dropdown-header&quot;>Synenergene</li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Application_Scenario&quot;>Application Scenario</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Techno_Moral_Newsletter&quot;>Techno-Moral Newsletter</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Blog.html&quot;>Techno-Moral Blog</a></li>  </ul>  </li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Interlab_Study&quot;>Interlab</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Achievements&quot;>Achievements</a></li>  <li><a href=&quot;https://2016.igem.org/Team:UCC_Ireland/Attributions&quot;>Attributions</a></li>  </ul>  </div>  </div> </nav>  <div class=&quot;container-fluid fix-nav-padding-top&quot;></p>
+
<p>In order to visualise the presentation of protein to the cytosol of a macrophage, a reporter protein (iRFP) was utilised. In order for this protein to fluoresce, biliverdin, a cofactor found in the cytosol of mammalian cells, must be present. Thus, if fluorescence was recorded, it could be concluded that the iRFP had been secreted by the L.lactis into the cytosol of the macrophage.</p>
  
      <p> <div class&quot;container&quot;>  <p>iRFP proof of concept</p></p>
+
<img src="https://static.igem.org/mediawiki/2016/a/a8/T--UCC_Ireland--irfp-8.png" class="img-responsive">
  
      <p><p>Introduction</p></p>
+
<p>The experiments were designed as in the schematic above. Raw 264.7 macrophages were incubated at 37 Degrees Celsius for four hours in 5% CO2 (1 X 10^5 macrophages per well). L. lactis were then added to these in different wells at three separate multiplicities of infection (MOI): 100:1, 200:1 and 300:1 ratios of L.lactis to macrophages. One set of wells was kept as a negative control and had no L.lactis added to it. These were then incubated for six hours in the conditions described previously. Following this, the DMEM was replaced with DMEM containing penicillin and streptomycin to kill the L.lactis within the cells and in the extracellular medium. The cells were then incubated again for between one and two hours. After this final incubation step, the cells were washed in phosphate buffered saline.</p>
  
      <p><p>iRFP was utilised as a reporter in our project. Having correctly cloned in iRFP to our plasmid of of interest pNZ44, we had to determine if it was functional. Initially we had thought that the required co-factor, biliverdin, was only available in the cytosol of the RAW 264 cells. However, we subsequently found out in our experiments that it was in Foetal Bovine Serum (FBS) as well. </p></p>
+
<p>Cells were then analysed using the Odyssey Infrared Imaging System. Plates were photographed (Fig. 1) and fluorescent intensity plotted against MOI (Fig . 2).</p>
  
      <p><p>Therefore it was now possible to validate whether our protein is functional in the presence of the cofactor biliverdin. </p></p>
+
<img src="" class="img-responsive">
  
      <p><p>Method </p></p>
+
<h2>Results</h2>
  
      <p><p>To do this, we compared L.lactis expressing iRFP in media with FBS and media without FBS across several concentrations of L.lactis (written in terms of the corresponding multiplicity of infection used in the &amp;ldquo;Real World Demonstration&amp;rdquo; experiment. Hereafter referred to as MOI for simplicity). L.lactis was grown in media with FBS for 4 hours to allow for the protein being expressed to interact with biliverdin which it uses as its phytochrome. Following this, the plates were analysed using the Odyssey infrared scanner. (Fig. 1 and 2). The fluorescent intensity was also plotted against the multiplicity of infection. (Fig. 3). </p></p>
+
<img src="" class="img-responsive">
  
      <p><p>Results</p></p>
+
<p> Fig. 1: Plates containing Macrophages infected with L.lactis at varying MOI. Left to right: MOI=100, MOI=300, MOI=1,000.</p>
  
      <p><p></p></p>
+
<img src="" class="img-responsive">
 
+
      <p><p></p></p>
+
 
+
      <p><p></p></p>
+
 
+
      <p><p> Fig. 1: Photographs of L.lactis in FBS at three different MOIs in media with FBS visualised using Odyssey infrared scanner. Left to right: MOI=100, MOI=300, MOI=1000.</p></p>
+
 
+
      <p><p></p></p>
+
 
+
      <p><p></p></p>
+
 
+
      <p><p></p></p>
+
 
+
      <p><p>Fig. 2: Photographs of negative control plates (L. lactis in media without FBS).</p></p>
+
 
+
      <p><p> Fig. 3: Graph of fluorescent intensity against MOI. There is a linear relationship between the amount of L.lactis initially aliquoted to each well and the fluorescence intensity at the end of the experiment. This is reflects the fact that, as the number of L.lactis cells increases, a greater overall amount of protein is produced. The plates containg the L.lactis with FBS in the medium showed fluorescence under the infrared scanner, and the resulting graph of fluorescent intensity against MOI shows that there was a linear relationship between the two. There was no fluorescence observed from any of the wells of the plates containing no FBS.</p></p>
+
 
+
      <p><p> Conclusion</p></p>
+
 
+
      <p><p>The plates containing L.lactis with FBS (and hence biliverdin) showed fluorescence, while those with no FBS (and hence no biliverdin) showed no fluorescence. This is proof that the iRFP is functional in the presence of its co-factor, biliverdin. </p></p>
+
 
+
      <p><p></p></p>
+
 
+
      <p><p></p> </div>  </p>
+
 
+
    <p>  <br>  <br>  <hr>  <br>  <br>  </p>
+
 
+
    <p> <div class=&quot;row&quot; id=&quot;sponsors&quot;>  <div class=&quot;col-xs-12 col-md-11 col-md-11 text-center text-uppercase&quot;>  <div class=&quot;row&quot;>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;http://apc.ucc.ie/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/f/f3/T--UCC_Ireland--apc.png&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;http://www.ccrc.ie/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/a/a6/T--UCC_Ireland--ccrc.png&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;https://www.ucc.ie/en/med-health/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/2/20/T--UCC_Ireland--COMH.jpg&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;http://www.fyffes.us/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/f/f8/T--UCC_Ireland--Fyffes_SVG_logo.svg.png&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;http://www.genscript.com/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/5/5b/T--UCC_Ireland--genscripteditkevin.png&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;http://www.lilly.ie/en/index.aspx&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/7/73/T--UCC_Ireland--hutchinsonlilly-2vd3ujlywuaxuzb5zmonpc.jpg&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;http://eu.idtdna.com/site&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/b/b0/T--UCC_Ireland--IDT_logo_trans.png&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;http://www.janssen.com/ireland/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/6/65/T--UCC_Ireland--Janssen.jpg&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;https://www.synenergene.eu/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/e/ef/T--UCC_Ireland--logo%281%29.png&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;https://www.ucc.ie/en/biochemistry/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/0/03/T--UCC_Ireland--schoolofbiochemlogoeditkevin.png&quot; alt=&quot;&quot;></a>  </div>  <div class=&quot;col-xs-4 col-md-1 col-lg-1&quot;>  <a href=&quot;http://www.ucc.ie/en/&quot; target=&quot;_blank&quot;><img src=&quot;https://static.igem.org/mediawiki/2016/4/47/T--UCC_Ireland--ucc.png&quot; alt=&quot;&quot;></a>  </div> </div>  <br>  <br>  <br>  <br>  </div>  </div><!-- /sponsors -->  <br>  <br>  <br>  <br>  </div>  </div><!-- /sponsors --></p>
+
 
+
<p> <hr></p>
+
 
+
<p> </div><!-- /home -->  </div> <!-- /container full --></p>
+
 
+
<p> </body> </html> </p>
+
  
 +
<p> Fig. 2: Bar graph of fluorescent intensity against MOI.</p>
 +
<hr>
 +
<h2>Conclusion</h2>
 +
<p>Our results indicate that at all multiplicities of infection, iRFP was present in the cytosol of the macrophages. The negative control showed no fluorescence, verifying that the fluorescence did not come from another source within the macrophages. Thus, when our L.lactis is present in the ECM of macrophages, it can undergo phagocytosis, escape from the phagosome and successfully secrete our intended proteins into the cytosol of the macrophage. In the clinical setting, this could be used to get potential antigens selectively to antigen presenting cells with the aim of immunizing people against diseases. This is how our leishmaniasis antigen could be used in immunizing patients. </p>
 
</div>
 
</div>
 +
       
 +
        <br>
 +
        <br>
 +
        <br>
 +
        <br>
 +
        <hr>
  
 
+
        <div class="row" id="sponsors">
<br>
+
          <div class="col-xs-12 col-md-11 col-md-11 text-center text-uppercase">
<br>
+
            <div class="row">
<hr>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
<br>
+
    <a href="http://apc.ucc.ie/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/f/f3/T--UCC_Ireland--apc.png" alt=""></a>
<br>
+
  </div>
 
+
  <div class="col-xs-4 col-md-1 col-lg-1">
 
+
    <a href="http://www.ccrc.ie/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/a/a6/T--UCC_Ireland--ccrc.png" alt=""></a>
<div class="row" id="sponsors">
+
  </div>
  <div class="col-xs-12 col-md-11 col-md-11 text-center text-uppercase">
+
  <div class="col-xs-4 col-md-1 col-lg-1">
    <div class="row">
+
    <a href="https://www.ucc.ie/en/med-health/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/2/20/T--UCC_Ireland--COMH.jpg" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
  </div>
        <a href="http://apc.ucc.ie/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/f/f3/T--UCC_Ireland--apc.png" alt=""></a>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
      </div>
+
    <a href="http://www.fyffes.us/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/f/f8/T--UCC_Ireland--Fyffes_SVG_logo.svg.png" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
  </div>
        <a href="http://www.ccrc.ie/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/a/a6/T--UCC_Ireland--ccrc.png" alt=""></a>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
      </div>
+
    <a href="http://www.genscript.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/5/5b/T--UCC_Ireland--genscripteditkevin.png" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
  </div>
        <a href="https://www.ucc.ie/en/med-health/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/2/20/T--UCC_Ireland--COMH.jpg" alt=""></a>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
      </div>
+
    <a href="http://www.lilly.ie/en/index.aspx" target="_blank"><img src="https://static.igem.org/mediawiki/2016/7/73/T--UCC_Ireland--hutchinsonlilly-2vd3ujlywuaxuzb5zmonpc.jpg" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
  </div>
        <a href="http://www.fyffes.us/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/f/f8/T--UCC_Ireland--Fyffes_SVG_logo.svg.png" alt=""></a>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
      </div>
+
    <a href="http://eu.idtdna.com/site" target="_blank"><img src="https://static.igem.org/mediawiki/2016/b/b0/T--UCC_Ireland--IDT_logo_trans.png" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
  </div>
        <a href="http://www.genscript.com/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/5/5b/T--UCC_Ireland--genscripteditkevin.png" alt=""></a>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
      </div>
+
    <a href="http://www.janssen.com/ireland/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/6/65/T--UCC_Ireland--Janssen.jpg" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
  </div>
        <a href="http://www.lilly.ie/en/index.aspx" target="_blank"><img src="https://static.igem.org/mediawiki/2016/7/73/T--UCC_Ireland--hutchinsonlilly-2vd3ujlywuaxuzb5zmonpc.jpg" alt=""></a>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
      </div>
+
    <a href="https://www.synenergene.eu/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/e/ef/T--UCC_Ireland--logo%281%29.png" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
  </div>
        <a href="http://eu.idtdna.com/site" target="_blank"><img src="https://static.igem.org/mediawiki/2016/b/b0/T--UCC_Ireland--IDT_logo_trans.png" alt=""></a>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
      </div>
+
    <a href="https://www.ucc.ie/en/biochemistry/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/0/03/T--UCC_Ireland--schoolofbiochemlogoeditkevin.png" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
  </div>
        <a href="http://www.janssen.com/ireland/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/6/65/T--UCC_Ireland--Janssen.jpg" alt=""></a>
+
  <div class="col-xs-4 col-md-1 col-lg-1">
      </div>
+
    <a href="http://www.ucc.ie/en/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/4/47/T--UCC_Ireland--ucc.png" alt=""></a>
      <div class="col-xs-4 col-md-1 col-lg-1">
+
        <a href="https://www.synenergene.eu/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/e/ef/T--UCC_Ireland--logo%281%29.png" alt=""></a>
+
      </div>
+
      <div class="col-xs-4 col-md-1 col-lg-1">
+
        <a href="https://www.ucc.ie/en/biochemistry/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/0/03/T--UCC_Ireland--schoolofbiochemlogoeditkevin.png" alt=""></a>
+
      </div>
+
      <div class="col-xs-4 col-md-1 col-lg-1">
+
        <a href="http://www.ucc.ie/en/" target="_blank"><img src="https://static.igem.org/mediawiki/2016/4/47/T--UCC_Ireland--ucc.png" alt=""></a>
+
      </div>
+
    </div>
+
    <br>
+
    <br>
+
    <br>
+
    <br>
+
 
   </div>
 
   </div>
</div><!-- /sponsors -->
 
<br>
 
<br>
 
<br>
 
<br>
 
 
</div>
 
</div>
</div><!-- /sponsors -->
+
            <br>
 +
            <br>
 +
            <br>
 +
            <br>
 +
            <br>
 +
            <br>
 +
          </div>
 +
        </div><!-- /sponsors -->
  
<hr>
+
        <hr>
  
</div><!-- /home -->
+
      </div><!-- /home -->
</div> <!-- /container full -->
+
    </div> <!-- /container full -->
  
</body>
+
  </body>
 
</html>
 
</html>

Revision as of 02:04, 20 October 2016


UCC iGEM

Demonstration in a real world setting

Introduction

Following oral delivery of the vaccine to the body, the bacteria will travel down through the GI tract. It is here that they will cross the epithelial layer and encounter M cells in the Peyer’s patches in the MALT (mucosa associated lymphoid tissue). At the peyer’s patches, the bacteria can be phagocytosed by nearby antigen presenting cells (APCs). These APCs will sample the antigen and may present this antigen to B & T cells and therefore cause an immune response.

Method

To mimic these real world conditions, we aimed to use a mouse macrophage cell line (RAW 264.7) to demonstrate that our bacteria can present protein to the cytosol of the macrophage following phagocytosis (where, if it is an antigenic protein, it will be processed through the proteasomal degradation pathway and be presented on the cell surface bound to MHC class II molecules).

In order to visualise the presentation of protein to the cytosol of a macrophage, a reporter protein (iRFP) was utilised. In order for this protein to fluoresce, biliverdin, a cofactor found in the cytosol of mammalian cells, must be present. Thus, if fluorescence was recorded, it could be concluded that the iRFP had been secreted by the L.lactis into the cytosol of the macrophage.

The experiments were designed as in the schematic above. Raw 264.7 macrophages were incubated at 37 Degrees Celsius for four hours in 5% CO2 (1 X 10^5 macrophages per well). L. lactis were then added to these in different wells at three separate multiplicities of infection (MOI): 100:1, 200:1 and 300:1 ratios of L.lactis to macrophages. One set of wells was kept as a negative control and had no L.lactis added to it. These were then incubated for six hours in the conditions described previously. Following this, the DMEM was replaced with DMEM containing penicillin and streptomycin to kill the L.lactis within the cells and in the extracellular medium. The cells were then incubated again for between one and two hours. After this final incubation step, the cells were washed in phosphate buffered saline.

Cells were then analysed using the Odyssey Infrared Imaging System. Plates were photographed (Fig. 1) and fluorescent intensity plotted against MOI (Fig . 2).

Results

Fig. 1: Plates containing Macrophages infected with L.lactis at varying MOI. Left to right: MOI=100, MOI=300, MOI=1,000.

Fig. 2: Bar graph of fluorescent intensity against MOI.


Conclusion

Our results indicate that at all multiplicities of infection, iRFP was present in the cytosol of the macrophages. The negative control showed no fluorescence, verifying that the fluorescence did not come from another source within the macrophages. Thus, when our L.lactis is present in the ECM of macrophages, it can undergo phagocytosis, escape from the phagosome and successfully secrete our intended proteins into the cytosol of the macrophage. In the clinical setting, this could be used to get potential antigens selectively to antigen presenting cells with the aim of immunizing people against diseases. This is how our leishmaniasis antigen could be used in immunizing patients.