Line 4: | Line 4: | ||
<body> | <body> | ||
− | 18/ | + | <section> |
− | + | <div class="container"> | |
− | 19/ | + | <div class="timeline"> |
− | + | <div class="timeline-hline"></div> | |
− | 20/ | + | <div class="blog-post-item"> |
− | + | <div class="timeline-entry rounded"> | |
− | 06/06 | + | 18<span>May</span> |
− | <l>Take from the glycerinates of Goldenbraid Collection:</ | + | <div class="timeline-vline"></div> |
− | < | + | </div> |
− | Plasmid GB Code | + | <ul class="blog-post-info list-inline"> |
− | + | <li><span class="font-lato">May 18, 2016</span></li> | |
− | + | </ul> | |
− | + | <p><a href=" glycerinated cultures of C58 <i>Agrobacterium</i> with dsRED from GoldenBraid Collection. Prepare broth culture (5 mL LB + 5 &mu"></a>L kanamycin + 5 μL Rifampin) 1:1000 and incubate overnight at 28^C. <br></p> | |
− | + | </div> | |
− | + | <div class="blog-post-item"> | |
− | </ | + | <div class="timeline-entry rounded"> |
− | + | 19<span>May</span> | |
− | <l>Experiment with snails:</ | + | <div class="timeline-vline"></div> |
− | + | </div> | |
− | Let both N. benthamiana leafs with snails overnight at room temperature in separated boxes. We will observe if snails eat the leafs and if appears fluorescence. | + | <ul class="blog-post-info list-inline"> |
− | 15/ | + | <li><span class="font-lato">May 19, 2016</span></li> |
− | + | </ul> | |
− | 30/ | + | <p><a href="esh previously made culture by inoculating 10 &mu"></a>L in a new culture medium.<br></p> |
− | Orange DNA Genome Extraction protocol href | + | </div> |
− | <l>Take from the glycerinates of GoldenBraid Collection:</ | + | <div class="blog-post-item"> |
− | < | + | <div class="timeline-entry rounded"> |
− | Plasmid GB Code | + | 20<span>May</span> |
− | + | <div class="timeline-vline"></div> | |
− | + | </div> | |
− | + | <ul class="blog-post-info list-inline"> | |
− | </ | + | <li><span class="font-lato">May 20, 2016</span></li> |
− | 01/ | + | </ul> |
− | < | + | <p><a href="#">Agroinfiltration</a> in <i>Nicotiana benthamiana</i> of C58 with dsRED.<br></p> |
− | + | </div> | |
− | <l>Promoter 35s:Cas9 : Tnos</ | + | <div class="blog-post-item"> |
− | < | + | <div class="timeline-entry rounded"> |
− | Primers IG16JUN01 and IG16JUN02 have arrived. | + | 06<span>Jun</span> |
− | Finish orange DNA Genome Extraction and check DNA concentration with NanoDrop. Concentration is very low so extraction will be done again. | + | <div class="timeline-vline"></div> |
− | 02/ | + | </div> |
− | < | + | <ul class="blog-post-info list-inline"> |
− | + | <li><span class="font-lato">June 06, 2016</span></li> | |
− | < | + | </ul> |
− | + | <p></p> | |
− | < | + | <ul> |
− | <l> | + | <li> |
− | < | + | href=" |
− | + | <l> | |
− | + | T"></a> | |
− | + | <l> | |
− | < | + | Take from the glycerinates of Goldenbraid Collection: |
− | <l> | + | </li> |
− | < | + | </ul> |
− | + | <p><a href=""></a><br></p> | |
− | + | <div class="table-responsive" style="width:55%;overflow:inherit"> | |
− | + | <table class="table table-bordered table-striped"> | |
− | + | <tr> | |
− | + | <td><a href="Plas"></a>Plasmid</td> | |
− | + | <td>GB Code</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | </ | + | <td><a href="3 &alpha"></a>1</td> |
− | + | <td>GB0015</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td><a href="3 &alpha"></a>2</td> | |
− | + | <td>GB0017</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | < | + | <td><a href="3 &Omega"></a>1</td> |
− | + | <td>GB0019</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | </ | + | <td><a href="3 &Omega"></a>2</td> |
− | + | <td>GB0021</td> | |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td><a href="pUPD"></a>pUPD2</td> | |
− | < | + | <td>GB0307</td> |
− | + | </tr> | |
− | + | </table> | |
− | + | </div> | |
− | </ | + | <p><a href=""></a><br><a href="are liquid culture (3 mL LB + 3 &mu"></a>L antibiotic) 1:1000. Incubate at 37^C overnight. <br><a href=""></a><br></p> |
− | + | <ul> | |
− | + | <li> | |
− | + | href=" | |
− | < | + | <l> |
− | + | E"></a> | |
− | + | <l> | |
− | + | Experiment with snails: | |
− | < | + | </li> |
− | + | </ul> | |
− | <l> | + | <p><a href="experiments: one with infiltrated <i>Nicotiana benthamiana</i> and another with not infiltrated N.benthamiana (negative control). Lettuce leafs haven&rsquo"></a>t been correctly infiltrated and it seems that the expression level is low.<br><a href="Let "></a>Let both <i>N. benthamiana</i> leafs with snails overnight at room temperature in separated boxes. We will observe if snails eat the leafs and if appears fluorescence. <br><a href=""></a><br></p> |
− | + | </div> | |
− | < | + | <div class="blog-post-item"> |
− | + | <div class="timeline-entry rounded"> | |
− | < | + | 15<span>Jun</span> |
− | + | <div class="timeline-vline"></div> | |
− | + | </div> | |
− | + | <ul class="blog-post-info list-inline"> | |
− | < | + | <li><span class="font-lato">June 15, 2016</span></li> |
− | + | </ul> | |
− | + | <p><a href="riment is over due to snails haven&rsquo"></a>t eaten leafs enough so we have not been able to see fluorescence.<br></p> | |
− | + | </div> | |
− | + | <div class="blog-post-item"> | |
− | + | <div class="timeline-entry rounded"> | |
− | </ | + | 30<span>Jun</span> |
− | < | + | <div class="timeline-vline"></div> |
− | + | </div> | |
− | + | <ul class="blog-post-info list-inline"> | |
− | + | <li><span class="font-lato">June 30, 2016</span></li> | |
− | + | </ul> | |
− | + | <p><a href="Oran"></a>Orange DNA Genome Extraction protocol href<br><a href=""></a><br></p> | |
− | + | <ul> | |
− | + | <li> | |
− | + | href=" | |
− | </ | + | <l> |
− | < | + | T"></a> |
− | + | <l> | |
− | + | Take from the glycerinates of GoldenBraid Collection: | |
− | + | </li> | |
− | + | </ul> | |
− | + | <p><a href=""></a><br></p> | |
− | + | <div class="table-responsive" style="width:55%;overflow:inherit"> | |
− | + | <table class="table table-bordered table-striped"> | |
− | + | <tr> | |
− | </ | + | <td><a href="Plas"></a>Plasmid</td> |
− | + | <td>GB Code</td> | |
− | + | </tr> | |
− | Run electrophoresis gel of Clemenules | + | <tr> |
− | + | <th> href="Prom"></a>Promoter 35s:Cas9:nopaline synthase terminator (Tnos)</th> | |
− | + | <th>GB0639</th> | |
− | + | </tr> | |
− | < | + | <tr> |
− | + | <td><a href="Luci"></a>Luciferase (Luc) in pUPD2</td> | |
− | < | + | <td>GB0096</td> |
− | + | </tr> | |
− | + | <tr> | |
− | + | <td><a href="Tnos"></a>Tnos in pUPD2</td> | |
− | + | <td>GB0037</td> | |
− | + | </tr> | |
− | + | </table> | |
− | + | </div> | |
− | + | <p><a href=""></a><br></p> | |
− | < | + | </div> |
− | + | <div class="blog-post-item"> | |
− | + | <div class="timeline-entry rounded"> | |
− | + | 01<span>Jul</span> | |
− | < | + | <div class="timeline-vline"></div> |
− | + | </div> | |
− | < | + | <ul class="blog-post-info list-inline"> |
− | + | <li><span class="font-lato">July 01, 2016</span></li> | |
− | Run electrophoresis gel of | + | </ul> |
− | + | <p><a href="iniprep with E.Z.N.A ®"></a>. Plasmid Mini Kit I, Q(capless) Spin of: <br></p> | |
− | + | <ul> | |
− | < | + | <li> |
− | + | href=" | |
− | < | + | <l> |
− | + | "></a> | |
− | < | + | <l> |
− | + | Promoter 35s:Cas9 : Tnos | |
− | < | + | </li> |
− | + | </ul> | |
− | < | + | <p><a href=""></a><br><a href="uciferase and nopaline synthase terminator cultures haven&rsquo"></a>t succeed. Repeat Luc and Tnos cultures. <br> |
− | < | + | </ul> |
− | + | <p><a href=""></a><br><a href="Prim"></a>Primers IG16JUN01 and IG16JUN02 have arrived.<br><a href=""></a><br><a href="Fini"></a>Finish orange DNA Genome Extraction and check DNA concentration with NanoDrop. Concentration is very low so extraction will be done again.<br><a href=""></a><br></p> | |
− | + | </div> | |
+ | <div class="blog-post-item"> | ||
+ | <div class="timeline-entry rounded"> | ||
+ | 02<span>Jul</span> | ||
+ | <div class="timeline-vline"></div> | ||
+ | </div> | ||
+ | <ul class="blog-post-info list-inline"> | ||
+ | <li><span class="font-lato">July 02, 2016</span></li> | ||
+ | </ul> | ||
+ | <p><a href="iniprep with E.Z.N.A ®"></a>. Plasmid Mini Kit I, Q(capless) Spin of:<br></p> | ||
+ | <ul> | ||
+ | <li> | ||
+ | href=" | ||
+ | <l> | ||
+ | "></a> | ||
+ | <l> | ||
+ | Luc in pUPD2 | ||
+ | </li> | ||
+ | </p> | ||
+ | <ul> | ||
+ | <li> | ||
+ | href=" | ||
+ | <l> | ||
+ | "></a> | ||
+ | <l> | ||
+ | Tnos in pUPD2 | ||
+ | </li> | ||
+ | </ul> | ||
+ | <p><a href=""></a><br></p> | ||
+ | <ul> | ||
+ | <li> | ||
+ | href=" | ||
+ | <l> | ||
+ | C"></a> | ||
+ | <l> | ||
+ | Check orange DNA genome concentration with NanoDrop. | ||
+ | </li> | ||
+ | </ul> | ||
+ | <p><a href=""></a><br></p> | ||
+ | <div class="table-responsive" style="width:55%;overflow:inherit"> | ||
+ | <table class="table table-bordered table-striped"> | ||
+ | <tr> | ||
+ | <td><a href="le</td><td>DNA concentration (ng / &mu"></a>L)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="Clem"></a>Clemenules1 </td> | ||
+ | <td>3153.8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="Clem"></a>Clemenules 2 </td> | ||
+ | <td>4527.9</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p><a href=""></a><br></p> | ||
+ | <ul> | ||
+ | <li> | ||
+ | href=" | ||
+ | <l> | ||
+ | P"></a> | ||
+ | <l> | ||
+ | Perform a PCR to bind linker with luciferase: | ||
+ | </li> | ||
+ | </ul> | ||
+ | <p></p> | ||
+ | <div class="table-responsive" style="width:55%;overflow:inherit"> | ||
+ | <table class="table table-bordered table-striped"> | ||
+ | <tr> | ||
+ | <td><a href="ent</td><td>Volume(&mu"></a>L)</td> | ||
+ | <td>Program</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="Luci"></a>LuciferasepUPD</td> | ||
+ | <td>1</td> | ||
+ | <td>Temperature</td> | ||
+ | <td>Time </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="Buff"></a>Buffer HF</td> | ||
+ | <td>10</td> | ||
+ | <td>98^C</td> | ||
+ | <td>5 minutes</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="dNTP"></a>dNTPs</td> | ||
+ | <td>2</td> | ||
+ | <td>98^C</td> | ||
+ | <td>35x</td> | ||
+ | <td>30 seconds</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="IG16"></a>IG16JUN01</td> | ||
+ | <td>2.5</td> | ||
+ | <td>70^C</td> | ||
+ | <td>35x</td> | ||
+ | <td>30 seconds</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="IG16"></a>IG16JUN02</td> | ||
+ | <td>2.5</td> | ||
+ | <td>72^C</td> | ||
+ | <td>35x</td> | ||
+ | <td>1 minute 30 seconds</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="Taq "></a>Taq phusion</td> | ||
+ | <td>0.5</td> | ||
+ | <td>72^C</td> | ||
+ | <td>10 minutes</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="b>2</sub>O milli-Q</td><td>31.5</td><td>16^C</td><td>&infin"></a></td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p><a href=""></a><br></p> | ||
+ | </div> | ||
+ | <div class="blog-post-item"> | ||
+ | <div class="timeline-entry rounded"> | ||
+ | 04<span>Jul</span> | ||
+ | <div class="timeline-vline"></div> | ||
+ | </div> | ||
+ | <ul class="blog-post-info list-inline"> | ||
+ | <li><span class="font-lato">July 04, 2016</span></li> | ||
+ | </ul> | ||
+ | <p><a href=""></a><br><a href="Run "></a>Run electrophoresis gel of Clemenules DNA (agarose 1%). 45 mL agarose gel at 1% 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 100 V.<br><a href=""></a><br><a href="Rice"></a>Rice DNA Genome Extraction Protocol href<br><a href=""></a><br><a href="Run "></a>Run electrophoresis gel of Luciferase PCR product. 45 mL agarose gel at 1% 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 100 V.<br><a href=""></a><br><a href="Liga"></a>Ligate Reaction --> Linker:Luciferase into a pUPD2 <br><a href=""></a> | ||
</body> | </body> |
Revision as of 22:33, 21 September 2016
- June 06, 2016
-
href="
T"> Take from the glycerinates of Goldenbraid Collection:
L antibiotic) 1:1000. Incubate at 37^C overnight.
-
href="
E"> Experiment with snails:
t been correctly infiltrated and it seems that the expression level is low.
Let both N. benthamiana leafs with snails overnight at room temperature in separated boxes. We will observe if snails eat the leafs and if appears fluorescence.
- June 30, 2016
Orange DNA Genome Extraction protocol href
-
href="
T"> Take from the glycerinates of GoldenBraid Collection:
- July 01, 2016
. Plasmid Mini Kit I, Q(capless) Spin of:
-
href="
"> Promoter 35s:Cas9 : Tnos
t succeed. Repeat Luc and Tnos cultures.
Primers IG16JUN01 and IG16JUN02 have arrived.
Finish orange DNA Genome Extraction and check DNA concentration with NanoDrop. Concentration is very low so extraction will be done again.
- July 02, 2016
. Plasmid Mini Kit I, Q(capless) Spin of:
-
href="
"> Luc in pUPD2 -
href="
"> Tnos in pUPD2 -
href="
C"> Check orange DNA genome concentration with NanoDrop. -
href="
P"> Perform a PCR to bind linker with luciferase:
- July 04, 2016
Run electrophoresis gel of Clemenules DNA (agarose 1%). 45 mL agarose gel at 1% 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 100 V.
Rice DNA Genome Extraction Protocol href
Run electrophoresis gel of Luciferase PCR product. 45 mL agarose gel at 1% 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 100 V.
Ligate Reaction --> Linker:Luciferase into a pUPD2