Difference between revisions of "Team:Valencia UPV/HP/Silver"

 
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<body>
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    <style>
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    .page-header{
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    background-position-y:-15em;
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    }
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    @media screen and (max-width: 1370px){
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    </style>
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    <title></title>
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</head>
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<body>
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    <section class="page-header page-header-lg parallax parallax-3" style=
 +
    "background-image:url('https://static.igem.org/mediawiki/2016/c/c8/T--Valencia_UPV--socialEngagementTitleBack.png');">
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    <div class="overlay dark-5">
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            <!-- dark overlay [1 to 9 opacity] -->
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        </div>
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        <div class="container">
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            <h1>Social Engagement</h1>
 +
        </div>
 +
    </section>
 +
    <section>
 +
        <div class="container-fluid">
 +
            <div class="row">
 +
                <div class="col-md-2 col-sm-3">
 +
                    <div class="side-nav margin-bottom-60 margin-top-30">
 +
                        <div class="side-nav-head">
 +
                            <button class="fa fa-bars"></button>
 +
                            <h4>Index</h4>
 +
                        </div>
 +
                        <ul class=
 +
                        "list-group list-group-bordered list-group-noicon uppercase">
 +
                        <li class="list-group-item">
 +
                                <a href=
 +
                                "https://2016.igem.org/Team:Valencia_UPV/HP/Silver#Survey:newplantbreedingtechniques_id">
 +
                                <span class=
 +
                                "size-11 text-muted pull-right"></span>Survey:
 +
                                new plant breeding techniques</a>
 +
                            </li>
 +
                            <li class="list-group-item">
 +
                                <a href=
 +
                                "https://2016.igem.org/Team:Valencia_UPV/HP/Silver#Everychildisascientist_id">
 +
                                <span class=
 +
                                "size-11 text-muted pull-right"></span>Every
 +
                                child is a scientist</a>
 +
                            </li>
 +
                            <li class="list-group-item">
 +
                                <a href=
 +
                                "https://2016.igem.org/Team:Valencia_UPV/HP/Silver#Itisnevertoolatetolearn_id">
 +
                                <span class=
 +
                                "size-11 text-muted pull-right"></span>It is
 +
                                never too late to learn</a>
 +
                            </li>
 +
                            <li class="list-group-item">
 +
                                <a href=
 +
                                "https://2016.igem.org/Team:Valencia_UPV/HP/Silver#Press_id">
 +
                                <span class=
 +
                                "size-11 text-muted pull-right"></span>Press</a>
 +
                            </li>
 +
                        </ul>
 +
                    </div>
 +
                </div>
 +
                <div class="col-md-10 col-sm-9">
 +
                                     
 +
                    <div class="blog-post-item" id=
 +
                    "Survey:newplantbreedingtechniques_id">
 +
                        <h3>Survey: new plant breeding techniques</h3>
 +
                        <p>Social opinion about research and science can affect
 +
                        development and exploitation of innovative
 +
                        technologies. By taking in account people opinion, we
 +
                        can obtain benefits for society in different issues
 +
                        such as health or environment, allowing to introduce
 +
                        science in a way that it can be more accepted.<br><br>
 +
                        For that reason, HYPE-IT project opts for mutual
 +
                        communication between society and scientists. It is
 +
                        utmost important for us to know how our project can be
 +
                        leveraged by users and potential beneficiaries.<br><br>
 +
                        To gain further insight into general knowledge about
 +
                        some plant breeding techniques such as genome editing,
 +
                        transgenesis or genetic engineering, a survey has been
 +
                        carried out. Our goal was to know if people knew the
 +
                        difference between these plant breeding techniques, and
 +
                        if they have or not solid reasons to be in favor or
 +
                        against genome editing.<br><br>
 +
                        One hundred fifteen people between the ages of 16-68
 +
                        were interviewed. Survey represents most of the levels
 +
                        and fields of study (science, engineering, arts,
 +
                        primary school, college, etc).<br><br>
 +
                        They were asked if they knew current plant breeding
 +
                        techniques in order to reveal us the general society’s
 +
                        knowledge about it. Afterwards, we wanted to know which
 +
                        of these techniques they think that are currently being
 +
                        used. In other words, how people think that crops are
 +
                        improved to get higher nutritional quality fruits.
 +
                        Figure 1 shows that hybridization - also known as
 +
                        cross-species – and artificial selection – best plants
 +
                        are selected – are the most known techniques. As it can
 +
                        be checked, induced mutagenesis and polyploidy are the
 +
                        least known techniques.<br></p>
 +
                        <div style="text-align:center;">
 +
                            <img class="img-responsive" src=
 +
                            "https://static.igem.org/mediawiki/2016/4/44/T--Valencia_UPV--barrassurvey.png"
 +
                            style="width:600px">
 +
                            <p style=
 +
                            "text-align: center;font-style: italic;font-size: 13px;">
 +
                            <b>Figure 1</b>. Plant breeding techniques known by
 +
                            the surveyed.</p>
 +
                        </div>
 +
                        <p><br>
 +
                        It is interesting to notice that only the 33.9% of
 +
                        people consider that induced mutagenesis is normally
 +
                        used. However, this is actually one of the most common
 +
                        techniques for plant breeding, together with
 +
                        hybridization and artificial selection. One of the main
 +
                        conclusions that we can get from this analysis is that
 +
                        genome editing techniques have the most significate
 +
                        difference between what is known and what people think
 +
                        it is used.<br><br>
 +
                        People were asked about which plant breeding technique
 +
                        they think is the best and the worse from a
 +
                        nutritional, health and economical point of view. As
 +
                        seen in figure 2, the 44.3% chose artificial selection
 +
                        followed by the 23.5% that think that genetic editing
 +
                        is the best one. On the other hand, 68.7% consider that
 +
                        induced mutagenesis is not the best option to improve
 +
                        fruits’ quality. It is remarkable that only the 3.5% of
 +
                        the interviewed chose the genetic editing as the worse
 +
                        plant breeding technique. This is an encouraging
 +
                        result, as it seems that plant editing is not seen as
 +
                        bad as transgenics.<br></p>
 +
                        <div style="text-align:center;">
 +
                            <img class="img-responsive" src=
 +
                            "https://static.igem.org/mediawiki/2016/8/87/T--Valencia_UPV--quesossurvey.png"
 +
                            style="width:600px">
 +
                            <p style=
 +
                            "text-align: center;font-style: italic;font-size: 13px;">
 +
                            <b>Figure 2</b>. Opinion about the best and worst
 +
                            plant breeding techniques, from a nutritional,
 +
                            health and economical point of view.</p>
 +
                        </div>
 +
                        <p><br>
 +
                        As we can see in the Figure 3, there are many people
 +
                        who affirms to know about transgenic products. The
 +
                        interesting point is that just half of them are aware
 +
                        of the difference between transgenics and genome edited
 +
                        plants. This fact means that this new technology has to
 +
                        be diffused and communicated to society.<br>
 +
                        <br>
 +
                        It is also noticeable how society claims about
 +
                        preferring artificial selection over the other
 +
                        techniques. 85% of people who voted against consuming
 +
                        genome editing or transgenics said that they would
 +
                        rather eat “natural products”. For most of this same
 +
                        surveyed, induced mutagenesis was the worst technique
 +
                        to be used for plant breeding. It is possible that they
 +
                        do not know that it is a common technique. For that
 +
                        reasons, our team found as necessary science
 +
                        communication with society. It is important to know the
 +
                        difference between what we eat and what we think we
 +
                        eat.<br></p>
 +
                        <div style="text-align:center;">
 +
                            <img class="img-responsive" src=
 +
                            "https://static.igem.org/mediawiki/2016/e/ea/T--Valencia_UPV--barrasverticalessurvey.png"
 +
                            style="width:600px">
 +
                            <p style=
 +
                            "text-align: center;font-style: italic;font-size: 13px;">
 +
                            <b>Figure 3</b>. Knowledge about what transgenics
 +
                            are and the difference between them and genome
 +
                            editing.)</p>
 +
                        </div>
 +
                        <p><br>
 +
                        If we scientists are able to explain why all plant
 +
                        breeding techniques are equal on its outcomes, it is
 +
                        possible that people will accept gene editing and
 +
                        transgenics, allowing and even helping in a new and
 +
                        necessary revolution of crops.<br></p>
 +
                    </div>
 +
                    <div class="blog-post-item" id="Everychildisascientist_id">
 +
                        <h3>Every child is a scientist</h3>
 +
                        <p>Kids are natural scientists. They have an enquiring
 +
                        spirit. They are very curious and aren’t afraid to
 +
                        admit that they do not know something. Exploring and
 +
                        drawing conclusions from their experiences allow them
 +
                        to build a more predictable world. That is why we think
 +
                        that childhood is the suitable moment to impress them
 +
                        the passion for research and knowledge. This way, it is
 +
                        possible to start educating society to analyze and
 +
                        interpret science, instead of rejecting innovation. If
 +
                        they understand, they will have the ability to receive
 +
                        change without fear.</p><img class="img-responsive"
 +
                        src=
 +
                        "https://static.igem.org/mediawiki/2016/c/c7/T--Valencia_UPV--SummerSchool1.jpg"
 +
                        style="float:left;width:55%;margin:1em 1em 1em 0;">
 +
                        <p><br>
 +
                        This summer, we have taken part of their adventure of
 +
                        learning at the Summer School of the City of Arts and
 +
                        Sciences from Valencia. They have been approached
 +
                        biological aspects from cell biology such as molecular
 +
                        genetics or the main biological processes –
 +
                        replication, transcription and translation. But we
 +
                        strongly believe that young children learn best through
 +
                        doing, so apart from a brief introduction, we have
 +
                        mainly focused on practical activities and games to
 +
                        strengthen the concepts as much as possible. They have
 +
                        had to adopt the role of the main enzymes such as
 +
                        polymerases and ribosomes to carry out the processes of
 +
                        transmission and expression of genetic heritage. To get
 +
                        this, we have proposed some games like creating a
 +
                        protein from a DNA sequence by adding amino acids,
 +
                        writing their names nucleotides based on an imaginary
 +
                        genetic code, or guessing the genetic similarities
 +
                        between different species.<br>
 +
                        With all these games we also wanted to impress on
 +
                        children the idea of what scientific investigation
 +
                        involves. Real examples of proteins and experiments
 +
                        were used to show that not everything works the first
 +
                        time, even in real organism, mutations and other errors
 +
                        occur. Furthermore, some experiments fall in a heap, so
 +
                        they had to find out what went wrong, guess why, and
 +
                        try again. And this is one of the main characteristics
 +
                        of science, it involves a lot of debate, talking and
 +
                        listening to others and meet group agreements and
 +
                        conclusions.<br>
 +
                        Children have very enquiring minds, thus they are
 +
                        always asking questions and wondering about what could
 +
                        happen before they do something, creating hypothesis in
 +
                        their minds. Those approaches are very interesting to
 +
                        be stimulated since young, in order to face reality
 +
                        with a critical thinking, but also to help people to
 +
                        build their own ideas and convictions and refuse non
 +
                        reliable statements.<br></p>
 +
                        <p><br>
 +
                        But of course, we did not forget that we are iGEMers,
 +
                        so it was ineludible to talk with them about Synthetic
 +
                        Biology and all benefits that this field can contribute
 +
                        to society to make a better world. First of all, they
 +
                        were enquired about their ideas of what Synthetic
 +
                        Biology is, and we explained them the repercussion of
 +
                        biotechnology research on society with some fascinating
 +
                        examples. Nevertheless, we wanted them to catch the
 +
                        motivation and desire for creativity, so we proposed
 +
                        them to create their own organisms by using Synthetic
 +
                        Biology principles and all their imagination.<br>
 +
                        <br>
 +
                        It has been clearly an enrichment experience for both
 +
                        children and us, which has provided us a different
 +
                        point of perception of biological sciences and how to
 +
                        face the problems with creative and innovative
 +
                        solutions. We must maximize children’s potential,
 +
                        because every child is a scientist.<br>
 +
                        <br></p>
 +
                        <div class='sliderDiv'><img class='mySlides' src=
 +
                        'https://static.igem.org/mediawiki/2016/f/fa/T--Valencia_UPV--fotoEscuelaverano1.jpg'><img class='mySlides'
 +
                        src=
 +
                        'https://static.igem.org/mediawiki/2016/d/d7/T--Valencia_UPV--fotoEscuelaverano5.jpg'><img class='mySlides'
 +
                        src=
 +
                        'https://static.igem.org/mediawiki/2016/e/e5/T--Valencia_UPV--fotoEscuelaverano6.jpg'><img class='mySlides'
 +
                        src=
 +
                        'https://static.igem.org/mediawiki/2016/b/b5/T--Valencia_UPV--fotoEscuelaverano7.jpg'><img class='mySlides'
 +
                        src=
 +
                        'https://static.igem.org/mediawiki/2016/6/6d/T--Valencia_UPV--fotoEscuelaverano8.jpg'><img class='mySlides'
 +
                        src=
 +
                        'https://static.igem.org/mediawiki/2016/6/6d/T--Valencia_UPV--fotoEscuelaverano9.jpg'></div>
 +
                    </div>
 +
                    <div class="blog-post-item" id=
 +
                    "Itisnevertoolatetolearn_id">
 +
                        <h3>It is never too late to learn</h3>
 +
                        <p>Fear of innovation comes from ignorance. We believe
 +
                        that rejection of science advances as synthetic biology
 +
                        or crop improvement happen because non-expert people
 +
                        don’t know how these innovations works or what can they
 +
                        do for us now and in the future. For that reason, we
 +
                        decided to give a talk about synthetic biology. Its
 +
                        title was "Learning to program life".<br>
 +
                        The talk was given in a pub, as part of the initiative
 +
                        “Skepticals in the Pub” in Valencia, were each Friday
 +
                        people interested in the topic of the day reunite in a
 +
                        pub to learn more about the subject. The relaxed
 +
                        ambient and the dynamic talks serve as appeal for many
 +
                        people to go to the pub and learn about science by
 +
                        listening to experts in the field. Even if we are not
 +
                        true experts, we thought that our team was prepared to
 +
                        show how synthetic biology works and what impressive
 +
                        things can be done with it.<br></p>
 +
                        <div class='sliderDiv'><img class='mySlides1' src='https://static.igem.org/mediawiki/2016/f/f8/T--Valencia_UPV--pub2.png'><img class='mySlides1' src=
 +
                        'https://static.igem.org/mediawiki/2016/f/f8/T--Valencia_UPV--pub2.png'><img class='mySlides1'
 +
                        src=
 +
                        'https://static.igem.org/mediawiki/2016/5/5f/T--Valencia_UPV--pub1.png'><img class='mySlides1'
 +
                        src=
 +
                        'https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--scepticospubp%C3%BAblico.jpg'></div>
 +
                      </div>
 +
<div class="blog-post-item" id="Press_id">
 +
                            <h3>Press</h3>
 +
<p>One of our proudest publications about our project is our post in the PLoS Blog, where we could explain and present our project in a specialized blog. Hopefully, our post could have reached many people which can be interested: <a href="http://blogs.plos.org/synbio/2016/07/21/hype-it-by-valencia-upv-igem2016/">HYPE-IT by Valencia UPV iGEM, Plos Blogs.</a></p><br>                             
 +
<p>As a result of our social impact, many
 +
                            newspapers and webpages have published about
 +
                            HYPE-IT project. Many of them have highlighted the
 +
                            potential of the whole project, as well as the fact
 +
                            that all of us are high performance students.<br>
 +
                            Many valencian journals have published articles
 +
                            explaining the benefits that our project could
 +
                            provide to local agricultural areas in a near
 +
                            future. They also emphasize that CRISPR/Cas9
 +
                            technology is just the beginning of targeted genome
 +
                            editing techniques.<br>
 +
                            <br></p>
 +
                            <ul>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.lavanguardia.com/vida/20160727/403508477935/un-kit-de-450-euros-permitira-obtener-semillas-mejoradas-de-una-planta.html">
 +
                                    Un kit de 450 euros permitirá obtener
 +
                                    semillas mejoradas de una planta</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.levante-emv.com/comunitat-valenciana/2016/07/21/upv-competira-mit-boston-kit/1447267.html">
 +
                                    La UPV competirá en el MIT de Boston con un
 +
                                    kit para «cortar y pegar» genoma de
 +
                                    plantas</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.lasprovincias.es/valencia-ciudad/201607/27/estudiantes-iran-boston-concurso-20160727125026.html">
 +
                                    Estudiantes de la UPV irán a Boston a un
 +
                                    concurso de biología sintética con un
 +
                                    ’corta y pega’ de genoma de plantas</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.levante-emv.com/comunitat-valenciana/2016/10/10/proyecto-upv-permite-mejorar-variedades/1477503.html">
 +
                                    Un proyecto de la UPV permite mejorar
 +
                                    variedades de plantas sin alterar su
 +
                                    cualidad</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://valenciaplaza.com/alumnos-de-la-upv-llevan-a-boston-un-proyecto-para-editar-genes-en-plantas">
 +
                                    Alumnos de la UPV llevan a Boston un
 +
                                    proyecto para editar genes en plantas</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.tusnoticiasdelaribera.com/index.php?option=com_k2&view=item&id=24854:j%C3%B3venes-de-la-upv-llevan-a-boston-un-proyecto-para-mejorar-las-variedades-de-plantas-sin-alterar-su-naturaleza">
 +
                                    Jóvenes de la UPV llevan a Boston un
 +
                                    proyecto para mejorar las variedades de
 +
                                    plantas sin alterar su naturaleza</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://laredcomarcal.com/not/23741/la-upv-presenta-un-kit-para-mejorar-plantas-en-igem-2016/">
 +
                                    La UPV presenta un kit para mejorar plantas
 +
                                    en iGEM 2016</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.20minutos.es/noticia/2801787/0/alumnos-upv-presentan-maletin-para-cortar-pegar-genoma-plantas-igem-2016-boston/">
 +
                                    Alumnos de la UPV presentan un maletín para
 +
                                    "cortar y pegar" el genoma de las plantas
 +
                                    en el iGEM 2016 de Boston</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.vlcnoticias.com/la-diputacion-apoya-la-participacion-de-jovenes-valencianos-en-un-concurso-de-biologia-de-massachussets/">
 +
                                    La Diputación apoya la participación de
 +
                                    jóvenes valencianos en un concurso de
 +
                                    biología de Massachussets</a>
 +
                                </li>
 +
                            </ul>
 +
<img class="img-responsive"
 +
                        src=
 +
                        "https://static.igem.org/mediawiki/2016/1/19/T--Valencia_UPV--recortedeprensa.jpg"
 +
                        style="float:left;width:45%;margin:1em 1em 1em 0;">
 +
                            <p><br>
 +
                            Polytechnic University of Valencia (UPV) is one of
 +
                            the best universities of Spain, especially in
 +
                            Engineering and Biotechnology areas. They strongly
 +
                            bet for student scientific researches. Generación
 +
                            Espontánea (Spontaneous Generation) is a student
 +
                            organization that pretends to gather different
 +
                            university teams leaded by undergraduates students.
 +
                            These teams participate in national and
 +
                            international contests and projects, and our iGEM
 +
                            team takes part in this organization.<br>
 +
                            <br></p>
 +
                            <ul>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.upv.es/noticias-upv/noticia-8352-igem-2016-es.html">
 +
                                    9 estudiantes de la UPV participarán en el
 +
                                    concurso de biología sintética del MIT con
 +
                                    Hype-IT, un sistema de corta y pega del
 +
                                    genoma de plantas</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.laveupv.com/noticia/21207/ledicio-del-genoma-de-les-plantes-mes-accessible-amb-el-maleti-hype-it">
 +
                                    L’edició del genoma de les plantes més
 +
                                    accessible amb el maletí Hype-IT</a>
 +
                                </li>
 +
                            </ul><br>
 +
                            <p>Some valencian public institutions, as Diputació
 +
                            de València and CSIC (Superior Center of Scientific
 +
                            Research), have taken part in our project by
 +
                            offering support.<br></p>
 +
                            <ul>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.dival.es/sala-prensa/content/joves-de-la-upv-porten-boston-un-projecte-millorar-les-varietats-de-plantes-sense-alterar-la">
 +
                                    Joves de la UPV porten a Boston un projecte
 +
                                    per a millorar les varietats de plantes
 +
                                    sense alterar la seua naturalesa</a>
 +
                                </li>
 +
                                <li>
 +
                                    <a href=
 +
                                    "http://www.dicv.csic.es/arxius/27-07-2016%20IBMCP%20NP%20IGEM%202016.pdf">
 +
                                    El CSIC participa en el concurso de
 +
                                    Biología Sintética iGEM con el proyecto
 +
                                    Hype-IT, un sistema de corta y pega del
 +
                                    genoma de plantas</a>
 +
                                </li>
 +
                            </ul>
 +
                            <p><br></p>
 +
                        </div>
 +
                        <div class="blog-post-item" id="Videos:_id">
 +
                            <h3>Videos</h3>
 +
                            <p>Interviews of the team by local newspaper and
 +
                            university news have been also published:<br>
 +
                            <br></p><a href=
 +
                            "https://www.youtube.com/watch?v=535zcUFNY8Y">HYPE
 +
                            IT, equipo iGEM UPV 2016 - Noticia @UPVTV,
 +
                            20-07-2016</a><br>
 +
                            <a href=
 +
                            "http://www.lasprovincias.es/videos/multimedia-dia/201607/20/hype-equipo-igem-5043142815001-mm.html">
 +
                            HYPE IT, equipo IGEM de la UPV</a><br>
 +
                        </div>
 +
<br>
 +
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  <div class="row"><div class="col-xs-12"><button type="button" onclick="location.href='https://2016.igem.org/Team:Valencia_UPV/Protocols'">ALISIA PROTOCOLOS POR AQUÍ</button></div><div class="col-xs-6"><h3 style="color:green">18/05/2016</h3><p>Take glycerinated cultures of C58 <i>Agrobacterium</i> with dsRED from GoldenBraid Collection. Prepare broth culture (5 mL LB + 5 μL kanamycin + 5 μL Rifampin) 1:1000 and incubate overnight at 28°C.</p></div><div class="col-xs-6"><h3 style="color:green">19/05/2016</h3><p>Refresh previously made culture by inoculating 10 μL in a new culture medium.</p></div></div>
+
    </section>
<div class="row"><div class="col-xs-6 col-xs-offset-3"><h3 style="color:green">20/05/2016</h3><p>Agroinfiltration in <i>Nicotiana benthamiana</i> of C58 with dsRED. <a href="" target="blank"></a></p><br><h3 style="color:green">06/06/2016</h3><ul><li>Take from the glycerinates of Goldenbraid Collection: </li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Plasmid</td><td>GB Code</td></tr><tr><td>pD6B3 α1</td><td>GB0015</td></tr><tr><td>pD6B3 α2</td><td>GB0017</td></tr><tr><td>pD6B3 Ω1</td><td>GB0019</td></tr><tr><td>pD6B3 Ω2</td><td>GB0021</td></tr><tr><td>pUPD2</td><td>GB0307</td></tr></tbody></table></div><ul><li>Prepare liquid culture (3 mL LB + 3 μL antibiotic) 1:1000. Incubate at 37°C overnight.</li></ul><ul><li>Experiment with snails:</li></ul><p>Let both <i>N. benthamiana</i> leafs with snails overnight at room temperature in separated boxes. We will observe if snails eat the leafs and if appears fluorescence.</p><br><h3 style="color:green">15/06/2016</h3><p>Experiment is over due to snails haven’t eaten leafs enough so we have not been able to see fluorescence.</p><br><h3 style="color:green">30/06/2016</h3><ul><li>Orange DNA Genome Extraction protocol <a href="" target="blank"></a></li></ul><ul><li>Take  from the glycerinates of GoldenBraid Collection:</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Plasmid</td><td>GB Code</td></tr><tr><td>Promoter 35s:Cas9:nopaline synthase terminator (Tnos)</td><td>GB0639</td></tr><tr><td>Luciferase (Luc) in pUPD2</td><td>GB0096</td></tr><tr><td>Tnos in pUPD2</td><td>GB0037</td></tr></tbody></table></div><br><h3 style="color:green">01/07/2016</h3><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of: </li><ul class="ul_2"><li>Promoter 35s:Cas9 : Tnos</li></ul></ul><ul><li>Luciferase and nopaline synthase terminator cultures haven’t succeed. Repeat Luc and Tnos cultures.</li></ul><ul><li>Primers IG16JUN01 and IG16JUN02 have arrived.</li></ul><ul><li>Finish orange DNA Genome Extraction and check DNA concentration with NanoDrop. Concentration is very low so extraction will be done again.</li></ul><br><h3 style="color:green">02/07/2016</h3><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of:</li><ul class="ul_2"><li>Luc in pUPD2</li><li>Tnos in pUPD2</li></ul></ul><ul><li>Check orange DNA genome concentration with NanoDrop. </li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Sample</td><td>DNA concentration (ng / μL)</td></tr><tr><td>Clemenules1 </td><td>3153.8</td></tr><tr><td>Clemenules 2 </td><td>4527.9</td></tr></tbody></table></div><ul><li>Perform a PCR to bind linker with luciferase:</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Reagent</td><td>Volume(μL)</td><td colspan="3" style="text-align:center">Program</td></tr><tr><td>LuciferasepUPD</td><td>1</td><td>Temperature</td><td colspan="2" style="text-align:center">Time </td></tr><tr><td>Buffer HF</td><td>10</td><td>98°C</td><td colspan="2" style="text-align:center">5 minutes </td></tr><tr><td>dNTPs</td><td>2</td><td>98°C</td><td style="text-align: center; vertical-align: middle;" rowspan="3">35x</td><td>30 seconds</td></tr><tr><td>IG16JUN01</td><td>2.5</td><td>70°C</td><td>30 seconds</td></tr><tr><td>IG16JUN02</td><td>2.5</td><td>72°C</td><td>1 minute 30 seconds</td></tr><tr><td>Taq phusion</td><td>0.5</td><td>72°C</td><td colspan="2" style="text-align:center">10 minutes </td></tr><tr><td>H<sub>2</sub>O milli-Q</td><td>31.5</td><td>16°C</td><td colspan="2" style="text-align:center">∞ </td></tr></tbody></table></div><br><h3 style="color:green">04/07/2016</h3><ul><li>Run electrophoresis gel of Clemenules DNA (agarose 1%). 45 mL agarose gel at 1% 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 100 V.</li></ul><ul><li>Rice DNA Genome Extraction Protocol <a href="" target="blank"></a></li></ul><ul><li>Run electrophoresis gel of Luciferase PCR product. 45 mL agarose gel at 1% 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 100 V.</li></ul><ul><li>Ligate Reaction</li></ul><ul><li>Transform <i>E. coli</i> DH5α with it. The method that is necessary to carry out this procedure is explained in protocols <a href="" target="blank"></a></li></ul><ul><li>Check DNA concentration with NanoDrop. </li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>SAMPLE</td><td>DNA Concentration(ng / μL)</td></tr><tr><td>Rice Gleva 1</td><td>22.8</td></tr><tr><td>Rice Gleva 2</td><td>17.3</td></tr></tbody></table></div><br><h3 style="color:green">05/07/2016</h3><ul><li>Run electrophoresis gel of Gleva rice DNA. We have checked that there isn’t DNA.</li></ul><ul><li>Repeat: Rice DNA Genome Extraction <a href="" target="blank"></a></li></ul><ul><li>Check DNA concentration with NanoDrop.</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>SAMPLE</td><td>DNA Concentration(ng / μL)</td></tr><tr><td>Rice Gleva 1</td><td>294.9</td></tr><tr><td>Rice Gleva 2</td><td>193.7</td></tr></tbody></table></div><ul><li>Run electrophoresis gel of Gleva rice DNA. It observed that genome extraction is correctly done.</li></ul><br><h3 style="color:green">06/07/2016</h3><p> Take glycerinated cultures from Goldenbraid Collection:</p><div class="table-wrapper"><table class="alt"><tbody><tr><td>GB part</td><td>Plasmid</td><td>Antibiotic</td><td>Number GB</td></tr><tr><td>psgRNA</td><td>pUPD</td><td>Ampicillin</td><td>0645</td></tr><tr><td>U6-26</td><td>pUPD</td><td>Ampicillin</td><td>1001</td></tr></tbody></table></div><br><h3 style="color:green">07/07/2016</h3><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of:</li><ul class="ul_2"><li>psgRNA in pUPD2</li><li>U6-26 in pUPD2</li></ul></ul><ul><li>Primers IG16JUL01, IG16JUL02, IG16JUL03, IG16JUL04, IG16JUL05, IG16JUL06, IG16JUL07 and IG16JUL08 arrived.</li></ul><ul><li>gBlocks of - promoter 35s:5’ region - have arrived.</li></ul><ul><li>We perform a PCR of orange and rice Genome Extraction following the protocol <a href="" target="blank"></a></li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Sample</td><td>Initial concentration(ng/μL)</td><td>Final concentration(ng/μL)</td><td>Initial volume(μL)</td><td>Final volume (μL)</td></tr><tr><td>Clemenules 1</td><td>3153.8</td><td>150</td><td>4.756</td><td>100</td></tr><tr><td>Clemenules 2</td><td>4527.9</td><td>150</td><td>3.31</td><td>100</td></tr><tr><td>Gleva 1</td><td>294.9</td><td>150</td><td>50.8647</td><td>100</td></tr><tr><td>Gleva 2</td><td>193.7</td><td>150</td><td>77.44</td><td>100</td></tr></tbody></table></div><div class="table-wrapper"><table class="alt"><tbody><tr><td>Reagent</td><td>Volume(μL)</td><td colspan="3" style="text-align:center">Program</td></tr><tr><td> Clemenules DNA 1</td><td>1</td><td>Temperature</td><td colspan="2" style="text-align:center">Time </td></tr><tr><td>Buffer HF</td><td>10</td><td>98°C</td><td colspan="2" style="text-align:center">5 minutes </td></tr><tr><td>dNTPs</td><td>2</td><td>98°C</td><td style="text-align: center; vertical-align: middle;" rowspan="3">35x</td><td>30 seconds</td></tr><tr><td>IG16JUL01 (TFL_For)</td><td>2.5</td><td>64°C</td><td>30 seconds</td></tr><tr><td>IG16JUL02 (TFL_Rev)</td><td>2.5</td><td>72°C</td><td>30 seconds</td></tr><tr><td>Taq phusion</td><td>0.5</td><td>72°C</td><td colspan="2" style="text-align:center">10 minutes </td></tr><tr><td>H<sub>2</sub>O milli-Q</td><td>31.5</td><td>16°C</td><td colspan="2" style="text-align:center">∞</td></tr></tbody></table></div><div class="table-wrapper"><table class="alt"><tbody><tr><td>Reagent</td><td>Volume(μL)</td><td colspan="3" style="text-align:center">Program</td></tr><tr><td> Gleva DNA</td><td>1</td><td>Temperature</td><td colspan="2" style="text-align:center">Time </td></tr><tr><td>Buffer HF</td><td>10</td><td>98°C</td><td colspan="2" style="text-align:center">5 minutes </td></tr><tr><td>dNTPs</td><td>2</td><td>98°C</td><td style="text-align: center; vertical-align: middle;" rowspan="3">35x</td><td>30 seconds</td></tr><tr><td>IG16JUL03 (Ga20_for)</td><td>2.5</td><td>72°C</td><td>30 seconds</td></tr><tr><td>IG16JUL02 (Ga20_rev)</td><td>2.5</td><td>72°C</td><td>30 seconds</td></tr><tr><td>Taq phusion</td><td>0.5</td><td>72°C</td><td colspan="2" style="text-align:center">10 minutes </td></tr><tr><td>H<sub>2</sub>O milli-Q</td><td>31.5</td><td>16°C</td><td colspan="2" style="text-align:center">∞ </td></tr></tbody></table></div><ul><li>Ligate reaction of promoter 35s:5’ region in pUPD2. Following ligation protocol <a href="" target="blank"></a>, BsmbI enzyme is used in this reaction.</li></ul><br><h3 style="color:green">08/07/2016</h3><ul><li>Run electrophoresis gel of Clemenules and Gleva PCR products. 45 mL agarose gel at 1 % 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 120 V.</li></ul><ul><li>Transform <i>E. coli</i> with the next devise: promoter 35s:5’ region (electroporation 2.5KV). Plating it and incubate overnight at 37°C.</li></ul><ul><li>Take glycerinated culture for Georgia collaboration. The devise is promoter 35s:GFP:Tnos (α1 and kanamycin)</li></ul><br><h3 style="color:green">09/07/2016</h3><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of:</li><ul class="ul_2"><li>promoter 35s:GFP:Tnos</li></ul></ul><ul><li>No colonies have grown in the devise promoter 35s:5’ region petri dishes. Repeat transformation procedure, plating again and incubate overnight at 37°C.</li></ul><br><h3 style="color:green">11/07/2016</h3><ul><li>Pick a single E. coli DH5α (promoter 35s:5’ region in pUPD2) colony from the plate that has been incubated overnight. Inoculate a starter culture of 4 ml of LB medium with 4 μL of chloramphenicol in a 50 ml tube with the colony and incubate it overnight at 37°C with shaking.</li></ul><ul><li>Check Georgia miniprep concentration with NanoDrop (promoter 35s:GFP : Tnos)</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Sample</td><td>DNA Concentration(ng / μL)</td><td>DNA Concentration(ng)</td></tr><tr><td>1</td><td>105.2</td><td>5035.2</td></tr><tr><td>2</td><td>104.6</td><td>5035.2</td></tr></tbody></table></div><ul><li>Targets ligations in pUPD2 (Orange Clemenules and Rice Gleva). Following ligation protocol <a href="" target="blank"></a>, BsmbI enzyme is used in this reaction.</li></ul><br><h3 style="color:green">12/07/2016</h3><ul><li>Pick a single E. coli DH5α (target Gleva in pUPD2 and target Clemenules in pUPD2) colony from the plate that has been incubated overnight. Inoculate a starter culture of 4 ml of LB medium with 4 μL of chloramphenicol in a 50 ml tube with the colony and incubate it 16 hours at 37°C.</li></ul><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of: </li><ul class="ul_2"><li>Promoter 35s:5’region in pUPD2</li></ul></ul><ul><li>Digestion of minipreps with NotI. Incubate 1 hour at 37°C</li></ul><ul><li>Run electrophoresis gel of the following devise: promoter 35s:5’ region in pUPD2. We remain the samples 1 and 3.</li></ul><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of: </li><ul class="ul_2"><li>Rice Gleva target in pUPD2</li><li>Orange Clemenules target in pUPD2</li></ul></ul><ul><li>Digestion of minipreps with NotI. Incubate 1 hour at 37°C.</li></ul><ul><li>Run electrophoresis gel of the same devise:</li><ul class="ul_2"><li>Rice Gleva target in pUPD2</li><li>Orange Clemenules target in pUPD2</li></ul></ul><ul><li>Ligation using Golden Braid assembly of the next devise:</li><ul class="ul_2"><li>Promoter 35s:5’ region:Target:Luc:Tnos in α1 plasmid.</li></ul></ul><br><h3 style="color:green">13/07/2016</h3><ul><li><i>E. coli</i> Transformation with the devise:</li><ul class="ul_2"><li>Promoter 35s:5’ region:Target:Luc:Tnos in α1 plasmid.</li></ul></ul><ul><li>E. coli plating in plates with Kanamycin (antibiotic). Incubate overnight at 37°C</li></ul><br><h3 style="color:green">14/07/2016</h3><ul><li>Pick a single E. coli DH5α (promoter 35s:5’ region) colony from the plate that has been incubated overnight. Inoculate a starter culture of 4 ml of LB medium with 4 μL of chloramphenicol in a 50 ml tube with the colony and incubate it 16 hours at 37°C.</li></ul><ul><li>Primers IG16JUL09, IG16JUL10, IG16JUL11, IG16JUL12, IG16JUL13, IG16JUL14, IG16JUL15 and IG16JUL16 arrived.</li></ul><ul><li>Ligation using Golden Braid assembly of the next devises:</li><ul class="ul_2"><li>promoter 35s:5’ region:Clemenules target control positive:Luc:Tnos</li><li>promoter 35s:5’ region:Gleva target control positive:Luc:Tnos</li><li>promoter 35s:5’ region:Clemenules target consensus:Luc:Tnos</li><li>promoter 35s:5’ region:Gleva target consensus:Luc:Tnos</li><li>promoter U6-26:sgRNA Clemenules: psgRNA (scaffold)</li><li>promoter U6-26:sgRNA Gleva: psgRNA (scaffold)</li></ul></ul><ul><li>Step 1: Annealing of oligonucleotides. Received primers are at 1uM. It is necessary taking to 10 uM.</li></ul><ul><li>Mix in an Eppendorf:</li><li>18 μL of H<sub>2</sub>O milli-Q</li><li>1 μL forward primer</li><li>1 μL reverse primer</li></ul><ul><li>Step 2: Ligation reaction</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td></td><td>Reagent</td><td>Volume (μL)</td></tr><tr><td></td><td>Target control positive / Target consensus</td><td>1 </td></tr><tr><td></td><td>promoter 35s:5’ region</td><td>1</td></tr><tr><td></td><td>Luciferase</td><td>1</td></tr><tr><td></td><td>Tnos</td><td>1</td></tr><tr><td></td><td>α1 plasmid</td><td>1</td></tr><tr><td></td><td>BSA10X</td><td>1.2</td></tr><tr><td></td><td>Ligase Buffer</td><td>1.2</td></tr><tr><td></td><td>BsaI</td><td>1</td></tr><tr><td></td><td>T4 ligase</td><td>1</td></tr><tr><td></td><td>H<sub>2</sub>O milli-Q</td><td>2.6</td></tr></tbody></table></div><p> </p><p> </p><div class="table-wrapper"><table class="alt"><tbody><tr><td></td><td>Reagent</td><td>Volume (μL)</td></tr><tr><td></td><td>sgRNA Clemenules / sgRNA Gleva</td><td>1</td></tr><tr><td></td><td>promoter U6 -26</td><td>1</td></tr><tr><td></td><td>psgRNA (scaffold)</td><td>1</td></tr><tr><td></td><td>α1 plasmid</td><td>1</td></tr><tr><td></td><td>BSA10X</td><td>1.2</td></tr><tr><td></td><td>Ligase Buffer</td><td>1.2</td></tr><tr><td></td><td>BsaI</td><td>1</td></tr><tr><td></td><td>T4 ligase</td><td>1</td></tr><tr><td></td><td>H<sub>2</sub>O milli-Q</td><td>3.6</td></tr></tbody></table></div><p> </p><ul><li><i>E. coli</i> Transformation with the devises previously explained.</li></ul><ul><li>E. coli plating in 6 plates (6 ligation reactions) with Kanamycin (antibiotic). Incubate overnight at 37°C.</li></ul><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of: </li><ul class="ul_2"><li>Promoter 35s:5’ region : CL target : Luc : Tnos (3α1)</li><li>Promoter 35s:5’ region : A target : Luc : Tnos (3α1)</li></ul></ul><ul><li>Digestion of minipreps with EcoRI. Incubate 1 hour at 37°C</li></ul><br><h3 style="color:green">15/07/2016</h3><ul><li>Ligation using Golden Braid assembly of the next devises: </li><ul class="ul_2"><li>Promoter 35s:Cas9:Tnos – promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos</li><li>Promoter 35s:Cas9:Tnos – promoter 35s:5’ region:Ga20ox Rice target:Luc:Tnos</li></ul></ul><ul><li>E. coli Transformation with the devises previously explained.</li></ul><ul><li>Run an electrophoresis gel of the products from the digestion of minipreps. The devises are:</li><ul class="ul_2"><li>Promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos (3α1)</li><li>Promoter 35s:5’ region :Ga20ox Rice target:Luc:Tnos (3α1)</li></ul></ul><ul><li>Sequencing the following products:</li><ul class="ul_2"><li>Promotor 35s:5’ region in pUPD2 → correct</li></ul></ul><br><h3 style="color:green">16/07/2016</h3><ul><li>Transformations in <i>E. coli</i> DH5α with:</li><ul class="ul_2"><li>Promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos (3α1)</li><li>Promoter 35s:5’ region:Ga20ox Rice target:Luc:Tnos (3α1)</li></ul></ul><ul><li>Plating the last devises in 2 plates with <i>Agrobacterium</i> C58. Incubate 2 days at 28°C.</li></ul><ul><li>Minipreps (2 samples for each devise) with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of:</li><ul class="ul_2"><li>Promoter 35s:5’ region:Clemenules target control positive:Luc:Tnos</li><li>Promoter 35s:5’ region:Gleva target control positive:Luc:Tnos</li><li>Promoter 35s:5’ region:Clemenules target consensus:Luc:Tnos</li><li>Promoter 35s:5’ region:Gleva target consensus:Luc:Tnos</li><li>Promoter U6-26:sgRNA Clemenules:psgRNA (scaffold)</li><li>Promoter U6-26:sgRNA Gleva:psgRNA (scaffold)</li></ul></ul><ul><li>Ligation using Golden Braid assembly of the next devises: </li><ul class="ul_2"><li>Promotor 35s:Cas9:Tnos – U6:TFL Clemenules sgRNA:psgRNA (scaffold) (Ω1)</li><li>Promotor 35s:Cas9:Tnos – U6: Ga20ox Rice sgRNA:psgRNA (scaffold) (Ω1)</li></ul></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Reagent</td><td>Volume (μL)</td></tr><tr><td>Promotor 35s:Cas9 : Tnos</td><td>1</td></tr><tr><td>U6-26:TFL Clemenules sgRNA:psgRNA / U6-26:Ga20ox rice sgRNA:psgRNA</td><td>1</td></tr><tr><td>3Ω1</td><td>1</td></tr><tr><td>BSA10X</td><td>1.2</td></tr><tr><td>Ligase Buffer</td><td>1.2</td></tr><tr><td>BsmbI</td><td>1</td></tr><tr><td>T4 ligase</td><td>1</td></tr><tr><td>H<sub>2</sub>O milli-Q</td><td>4.6</td></tr></tbody></table></div><ul><li>Digestion of the minipreps with EcoRI which have been done before. Incubate 1 hour at 37°C. There is a total of twelve minipreps. It has been followed the Miniprep digestion protocol <a href="" target="blank"></a>.</li></ul><ul><li>Run electrophoresis gel of the digestion products.</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Lanes</td><td>Samples</td><td>Verification</td></tr><tr><td>1</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>2</td><td>gRNA Ga20ox 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>3</td><td>gRNA Ga20ox 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>4</td><td>Ga20ox consensus 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>5</td><td>Ga20ox consensus 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>6</td><td>Ga20ox knock-out 1</td><td><img src="https://static.igem.org/mediawiki/2016/7/7a/T--Valencia_UPV--cross.png" class="check_img"></td></tr><tr><td>7</td><td>Ga20ox knock-out 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>8</td><td>TFL consensus 1</td><td><img src="https://static.igem.org/mediawiki/2016/7/7a/T--Valencia_UPV--cross.png" class="check_img"></td></tr><tr><td>9</td><td>TFL consensus 2</td><td><img src="https://static.igem.org/mediawiki/2016/7/7a/T--Valencia_UPV--cross.png" class="check_img"></td></tr><tr><td>10</td><td>TFL knock-out 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>11</td><td>TFL knock-out 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>12</td><td>TFL gRNA 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>13</td><td>TFL gRNA 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>14</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr></tbody></table></div><ul><li>Pick a single E. coli DH5α colony from the plates that have been incubated overnight. The devises are:</li><ul class="ul_2"><li>Promoter 35s:TFL Knock-out:Luc:Tnos (4 samples)</li><li>Promoter U6-26:Ga20ox sgRNA:psgRNA (2 samples)</li></ul></ul><ul><li>Inoculate a starter culture of 4 ml of LB medium with 4 μL of kanamycin in a 50 ml tube with the colony and incubate it 16 hours at 37°C.</li></ul><br><h3 style="color:green">17/07/2016</h3><ul><li>Transformation in DH5α <i>E. coli</i> with:</li><ul class="ul_2"><li>Promoter 35s:Cas9:Tnos – U6:TFL Clemenules sgRNA:psgRNA (scaffold) (Ω1)</li><li>Promoter 35s:Cas9:Tnos – U6:Ga20ox sgRNA:psgRNA (scaffold) (Ω1)</li></ul></ul><ul><li>Plating <i>E. coli</i> transformations in plates with LB + agar + IPTG + XGal and incubate it overnight at 37°C.</li></ul><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of: </li><ul class="ul_2"><li>Promoter U6-26:Ga20ox sgRNA:psgRNA </li><li>Promoter 35s:5’ region:TFL Knock-out:Luc:Tnos (3α1)</li></ul></ul><ul><li>Digestion of the minipreps with EcoRI which have been done before. Incubate 1 hour at 37°C. There is a total of six minipreps. It has been followed the Miniprep digestion protocol <a href="" target="blank"></a>.</li></ul><ul><li>Run an electrophoresis gel of the digestion products.</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Lanes</td><td>Samples</td><td>Verification</td></tr><tr><td>1</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>2</td><td>gRNA Ga20ox 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>3</td><td>gRNA Ga20ox 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>4</td><td>gRNA Ga20ox 3</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>5</td><td>gRNA Ga20ox 4</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>6</td><td>TFL knock-out 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>7</td><td>TFL knock-out 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>8</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr></tbody></table></div><p>However, despite the fact that electrophoresis gel have correctly run, we have decided to repeat the ligation reactions. We have not get the expected results for a gRNA.</p><ul><li>Ligation using Golden Braid assembly of the next devises:</li><ul class="ul_2"><li>Promoter 35s:5’ region:TFL Clemenules target control positive:Luc:Tnos</li><li>Promoter 35s:5’ region:Ga20ox Gleva target control positive:Luc:Tnos</li><li>Promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos</li><li>Promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos</li><li>Promoter U6-26:sgRNA Clemenules:psgRNA (scaffold)</li><li>Promoter U6-26:sgRNA Gleva:psgRNA (scaffold)</li></ul></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Reagent</td><td>Volume(μL)</td><td>Reagent</td><td>Volume(μL)</td></tr><tr><td>TFL/Ga20ox gRNA</td><td>1</td><td>promoter 35s:5’region</td><td>1</td></tr><tr><td>U6-26</td><td>1</td><td>TFL/Ga20ox consensus  TFL/Ga20ox knock-out</td><td>1</td></tr><tr><td>psgRNA</td><td>1</td><td>luciferase</td><td>1</td></tr><tr><td>3α1</td><td>1</td><td>Tnos</td><td>1</td></tr><tr><td>BSA10X</td><td>1.2</td><td>3α1</td><td>1</td></tr><tr><td>Ligase Buffer</td><td>1.2</td><td>BSA10X</td><td>1.2</td></tr><tr><td>BsaI</td><td>1</td><td>Ligase Buffer</td><td>1.2</td></tr><tr><td>T4 ligase</td><td>1</td><td>BsmbI</td><td>1</td></tr><tr><td>H<sub>2</sub>O milli-Q</td><td>3.6</td><td>T4 ligase</td><td>1</td></tr><tr><td></td><td></td><td>H<sub>2</sub>O milli-Q</td><td>2.6</td></tr></tbody></table></div><br><h3 style="color:green">18/07/2016</h3><ul><li>Transformation in DH5α <i>E. coli</i> with ligation products (consensus targets and knock-out targets of TFL and Ga20ox as well as their gRNAs)</li></ul><ul><li>Plating <i>E. coli</i> transformations in plates with LB + agar + IPTG + XGal and incubate it overnight at 37°C.</li></ul><ul><li>Pick a single <i>Agrobacterium</i> C58 colony from the plates that have been incubating since 16/06/2016. The devises are:</li><ul class="ul_2"><li>Promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos (3α1)</li><li>Promoter 35s:5’ region:Ga20ox Rice target:Luc:Tnos (3α1)</li></ul></ul><ul><li>Incubate it 48 hours at 28°C.</li></ul><br><h3 style="color:green">19/07/2016</h3><ul><li>Pick transformed <i>E. coli</i> colony from the incubated plates. The devises are:</li><ul class="ul_2"><li>promoter 35s:5’ region:TFL Clemenules target control positive:Luc:Tnos</li><li>promoter 35s:5’ region:Ga20ox Gleva target control positive:Luc:Tnos</li><li>promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos</li><li>promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos</li><li>promoter U6-26: sgRNA Clemenules:psgRNA (scaffold)</li><li>promoter U6-26: sgRNA Gleva:psgRNA (scaffold)</li></ul></ul><ul><li>Incubate it overnight at 37°C.</li></ul><br><h3 style="color:green">20/07/2016</h3><p> </p><ul><li>Miniprep with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of:</li><ul class="ul_2"><li>promoter 35s:5’ region:TFL Clemenules target knock-out:Luc:Tnos</li><li>promoter 35s:5’ region:Ga20ox Gleva target control knock-out:Luc:Tnos</li><li>promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos</li><li>promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos</li><li>promoter U6-26:sgRNA TFL Clemenules:psgRNA (scaffold)</li><li>promoter U6-26:sgRNA Ga20ox Gleva:psgRNA (scaffold)</li></ul></ul><ul><li>Digestion of the minipreps with EcoRI which have been done before. Incubate 1 hour at 37°C. There is a total of six minipreps. It has been followed the Miniprep digestion protocol <a href="" target="blank"></a>.</li></ul><ul><li>Run an electrophoresis gel of the digestion products. We will keep the minipreps with “1”.</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Lanes</td><td>Samples</td><td>Verification</td></tr><tr><td>1</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>2</td><td>gRNA TFL 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>3</td><td>gRNA TFL 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>4</td><td>TFL consensus 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>5</td><td>TFL consensus 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>6</td><td>TFL knock-out 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>7</td><td>TFL knock-out 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>8</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>9</td><td>gRNA Ga20ox 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>10</td><td>gRNA Ga20ox 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>11</td><td>Ga20ox consensus 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>12</td><td>Ga20ox consensus 2</td><td><img src="https://static.igem.org/mediawiki/2016/7/7a/T--Valencia_UPV--cross.png" class="check_img"></td></tr><tr><td>13</td><td>Ga20ox knock-out 1</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>14</td><td>Ga20ox knock-out 2</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>15</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr></tbody></table></div><ul><li>Ligation using Golden Braid assembly of the next devises. Is used the restriction enzyme BsmbI.</li><ul class="ul_2"><li>promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA</li><li>Promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA</li></ul></ul><br><h3 style="color:green">21/07/2016</h3><p> </p><ul><li>Transformations in <i>E. coli</i> DH5α with:</li><ul class="ul_2"><li>promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA</li><li>promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA</li></ul></ul><p>Incubate 2 hours at 37°C.</p><ul><li>Plating <i>E. coli</i> transformation explained before and incubate it at 37°C overnight.</li></ul><ul><li><i>Agrobacterium</i> C58 transformation with:</li><ul class="ul_2"><li>promoter 35s:5’ region:TFL Clemenules target knock-out:Luc:Tnos</li><li>promoter 35s:5’ region:Ga20ox Gleva target control knock-out:Luc:Tnos</li><li>promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos</li><li>promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos</li></ul></ul><p>Incubate 48 hours at 28°C.</p><p> </p><br><h3 style="color:green">22/07/2016</h3><p> </p><ul><li>Sequencing reaction:</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Reagent</td><td>Volume (μL)</td></tr><tr><td>Primer in order to sequence</td><td>3</td></tr><tr><td>Miniprep reaction</td><td>5</td></tr><tr><td>H<sub>2</sub>O milli-Q</td><td>6</td></tr></tbody></table></div><div class="table-wrapper"><table class="alt"><tbody><tr><td>Sequence</td><td>Order</td></tr><tr><td>TFL gRNA</td><td>210.13.201</td></tr><tr><td>Ga20 gRNA</td><td>210.13.202</td></tr></tbody></table></div><ul><li>Ordered the necessary primers to sequence: TFL consensus, TFL knockout, Ga20ox consensus and Ga20ox knockout.</li></ul><ul><li><i>E. coli</i> transformations with:</li><ul class="ul_2"><li>Promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA: psgRNA</li></ul></ul><ul><li>Plating the last devise in plates with <i>Agrobacterium</i> C58. Plates contain spec + IPTG + X-Gal. Incubate 2 days at 28°C.</li></ul><ul><li>Pick a single <i>E. coli</i> DH5α (promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA and promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA) colony from the plates that has been incubated overnight. Inoculate a starter culture of 4 ml of LB medium with 4 μL of spectinomycin in a 50 ml tube with the colony and incubate it overnight at 37°C with shaking.</li></ul><br><h3 style="color:green">23/07/2016</h3><p> </p><ul><li>Minipreps (4 samples for each devise) with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of:</li><ul class="ul_2"><li>promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA</li><li>promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA</li></ul></ul><ul><li>Digestion of minipreps with BamHI following digestion protocol <a href="" target="blank"></a>. Incubate 1 hour at 37°C.</li></ul><ul><li>Run an electrophoresis gel of the digestion products. We will keep the minipreps with the sample number 4 for TFL sgRNA and the sample number 2 for Ga20ox sgRNA.</li></ul><ul><li>Pick a single <i>Agrobacterium</i> C58 (promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA and promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA ) colony from the plates that has been incubated overnight. Inoculate a starter culture of 5 ml of LB medium with 5 μL of spectinomycin and kanamycin in a falcon tube with the colony and incubate it overnight at 28°C with shaking.</li></ul><ul><li><i>Agrobacterium</i> C58 transformations with:</li><ul class="ul_2"><li>promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA</li><li>promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA</li></ul></ul><br><h3 style="color:green">24/07/2016</h3><p> </p><ul><li>Store the next cultures at -80°C:</li><ul class="ul_2"><li>promoter 35s:5’ region in pUPD2 (DH5α) number 1</li><li>Linker: luciferase in pUPD2 (DH5α) number 2</li></ul></ul><br><h3 style="color:green">25/07/2016</h3><ul><li>Pick a single <i>Agrobacterium</i> C58 (promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA in 3Ω1 and promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA in 3Ω1 ) colony from the plates that has been incubated overnight. Inoculate a starter culture of 5 ml of LB medium with 5 μL of spectinomycin and kanamycin in a falcon tube with the colony and incubate it overnight at 28°C with shaking.</li></ul><ul><li>Incubate it 48 hours at 28°C</li></ul><ul><li>Minipreps of <i>Agrobacterium</i> with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of:</li><ul class="ul_2"><li>promoter 35s:5’ region:TFL Clemenules target control positive:Luc:Tnos</li><li>promoter 35s:5’ region:Ga20ox Gleva target control positive:Luc:Tnos</li><li>promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos</li><li>promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos</li></ul></ul><ul><li>Digestion of minipreps with the restriction enzyme EcoRI. Incubate 1 hour at 37°C.</li></ul><ul><li>Run an electrophoresis gel of the digestion products.</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Lanes</td><td>Samples</td><td>Verification</td></tr><tr><td>1</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>2</td><td>Target Ga20ox consensus</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>3</td><td>Target Ga20ox Knock-out</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>4</td><td>Target TFL consensus</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>5</td><td>Target TFL knock-out</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>6</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr></tbody></table></div><br><h3 style="color:green">26/07/2016</h3><ul><li>Minipreps with E.Z.N.A. ®  Plasmid Mini Kit I, Q(capless) Spin of:</li><ul class="ul_2"><li>promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos in 3α1 plasmid from C58 <i>Agrobacterium</i></li><li>promoter 35s:5’ region:Ga20ox Gleva target:Luc:Tnos in 3α1 plasmid from C58 <i>Agrobacterium</i></li></ul></ul><ul><li>Digestion of minipreps with the restriction enzyme EcoRI. Incubate 1 hour at 37°C.</li></ul><ul><li>Run an electrophoresis gel of the digestion products:</li></ul><div class="table-wrapper"><table class="alt"><tbody><tr><td>Lanes</td><td>Samples</td><td>Verification</td></tr><tr><td>1</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>2</td><td>promoter 35s:5’ region:Target Ga20ox Rice:Luc:Tnos  </td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>3</td><td>promoter 35s:5’ region:Target TFL Clemunules:Luc:Tnos </td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr><tr><td>6</td><td>1 Kb molecular weight marker</td><td><img src="https://static.igem.org/mediawiki/2016/b/b7/T--Valencia_UPV--check.png" class="check_img"></td></tr></tbody></table></div><p> </p><p> </p><p> </p><p> </p><p></p></div></div>
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Latest revision as of 00:09, 19 October 2016

Survey: new plant breeding techniques

Social opinion about research and science can affect development and exploitation of innovative technologies. By taking in account people opinion, we can obtain benefits for society in different issues such as health or environment, allowing to introduce science in a way that it can be more accepted.

For that reason, HYPE-IT project opts for mutual communication between society and scientists. It is utmost important for us to know how our project can be leveraged by users and potential beneficiaries.

To gain further insight into general knowledge about some plant breeding techniques such as genome editing, transgenesis or genetic engineering, a survey has been carried out. Our goal was to know if people knew the difference between these plant breeding techniques, and if they have or not solid reasons to be in favor or against genome editing.

One hundred fifteen people between the ages of 16-68 were interviewed. Survey represents most of the levels and fields of study (science, engineering, arts, primary school, college, etc).

They were asked if they knew current plant breeding techniques in order to reveal us the general society’s knowledge about it. Afterwards, we wanted to know which of these techniques they think that are currently being used. In other words, how people think that crops are improved to get higher nutritional quality fruits. Figure 1 shows that hybridization - also known as cross-species – and artificial selection – best plants are selected – are the most known techniques. As it can be checked, induced mutagenesis and polyploidy are the least known techniques.

Figure 1. Plant breeding techniques known by the surveyed.


It is interesting to notice that only the 33.9% of people consider that induced mutagenesis is normally used. However, this is actually one of the most common techniques for plant breeding, together with hybridization and artificial selection. One of the main conclusions that we can get from this analysis is that genome editing techniques have the most significate difference between what is known and what people think it is used.

People were asked about which plant breeding technique they think is the best and the worse from a nutritional, health and economical point of view. As seen in figure 2, the 44.3% chose artificial selection followed by the 23.5% that think that genetic editing is the best one. On the other hand, 68.7% consider that induced mutagenesis is not the best option to improve fruits’ quality. It is remarkable that only the 3.5% of the interviewed chose the genetic editing as the worse plant breeding technique. This is an encouraging result, as it seems that plant editing is not seen as bad as transgenics.

Figure 2. Opinion about the best and worst plant breeding techniques, from a nutritional, health and economical point of view.


As we can see in the Figure 3, there are many people who affirms to know about transgenic products. The interesting point is that just half of them are aware of the difference between transgenics and genome edited plants. This fact means that this new technology has to be diffused and communicated to society.

It is also noticeable how society claims about preferring artificial selection over the other techniques. 85% of people who voted against consuming genome editing or transgenics said that they would rather eat “natural products”. For most of this same surveyed, induced mutagenesis was the worst technique to be used for plant breeding. It is possible that they do not know that it is a common technique. For that reasons, our team found as necessary science communication with society. It is important to know the difference between what we eat and what we think we eat.

Figure 3. Knowledge about what transgenics are and the difference between them and genome editing.)


If we scientists are able to explain why all plant breeding techniques are equal on its outcomes, it is possible that people will accept gene editing and transgenics, allowing and even helping in a new and necessary revolution of crops.

Every child is a scientist

Kids are natural scientists. They have an enquiring spirit. They are very curious and aren’t afraid to admit that they do not know something. Exploring and drawing conclusions from their experiences allow them to build a more predictable world. That is why we think that childhood is the suitable moment to impress them the passion for research and knowledge. This way, it is possible to start educating society to analyze and interpret science, instead of rejecting innovation. If they understand, they will have the ability to receive change without fear.


This summer, we have taken part of their adventure of learning at the Summer School of the City of Arts and Sciences from Valencia. They have been approached biological aspects from cell biology such as molecular genetics or the main biological processes – replication, transcription and translation. But we strongly believe that young children learn best through doing, so apart from a brief introduction, we have mainly focused on practical activities and games to strengthen the concepts as much as possible. They have had to adopt the role of the main enzymes such as polymerases and ribosomes to carry out the processes of transmission and expression of genetic heritage. To get this, we have proposed some games like creating a protein from a DNA sequence by adding amino acids, writing their names nucleotides based on an imaginary genetic code, or guessing the genetic similarities between different species.
With all these games we also wanted to impress on children the idea of what scientific investigation involves. Real examples of proteins and experiments were used to show that not everything works the first time, even in real organism, mutations and other errors occur. Furthermore, some experiments fall in a heap, so they had to find out what went wrong, guess why, and try again. And this is one of the main characteristics of science, it involves a lot of debate, talking and listening to others and meet group agreements and conclusions.
Children have very enquiring minds, thus they are always asking questions and wondering about what could happen before they do something, creating hypothesis in their minds. Those approaches are very interesting to be stimulated since young, in order to face reality with a critical thinking, but also to help people to build their own ideas and convictions and refuse non reliable statements.


But of course, we did not forget that we are iGEMers, so it was ineludible to talk with them about Synthetic Biology and all benefits that this field can contribute to society to make a better world. First of all, they were enquired about their ideas of what Synthetic Biology is, and we explained them the repercussion of biotechnology research on society with some fascinating examples. Nevertheless, we wanted them to catch the motivation and desire for creativity, so we proposed them to create their own organisms by using Synthetic Biology principles and all their imagination.

It has been clearly an enrichment experience for both children and us, which has provided us a different point of perception of biological sciences and how to face the problems with creative and innovative solutions. We must maximize children’s potential, because every child is a scientist.

It is never too late to learn

Fear of innovation comes from ignorance. We believe that rejection of science advances as synthetic biology or crop improvement happen because non-expert people don’t know how these innovations works or what can they do for us now and in the future. For that reason, we decided to give a talk about synthetic biology. Its title was "Learning to program life".
The talk was given in a pub, as part of the initiative “Skepticals in the Pub” in Valencia, were each Friday people interested in the topic of the day reunite in a pub to learn more about the subject. The relaxed ambient and the dynamic talks serve as appeal for many people to go to the pub and learn about science by listening to experts in the field. Even if we are not true experts, we thought that our team was prepared to show how synthetic biology works and what impressive things can be done with it.

Press

One of our proudest publications about our project is our post in the PLoS Blog, where we could explain and present our project in a specialized blog. Hopefully, our post could have reached many people which can be interested: HYPE-IT by Valencia UPV iGEM, Plos Blogs.


As a result of our social impact, many newspapers and webpages have published about HYPE-IT project. Many of them have highlighted the potential of the whole project, as well as the fact that all of us are high performance students.
Many valencian journals have published articles explaining the benefits that our project could provide to local agricultural areas in a near future. They also emphasize that CRISPR/Cas9 technology is just the beginning of targeted genome editing techniques.


Polytechnic University of Valencia (UPV) is one of the best universities of Spain, especially in Engineering and Biotechnology areas. They strongly bet for student scientific researches. Generación Espontánea (Spontaneous Generation) is a student organization that pretends to gather different university teams leaded by undergraduates students. These teams participate in national and international contests and projects, and our iGEM team takes part in this organization.


Some valencian public institutions, as Diputació de València and CSIC (Superior Center of Scientific Research), have taken part in our project by offering support.


Videos

Interviews of the team by local newspaper and university news have been also published:

HYPE IT, equipo iGEM UPV 2016 - Noticia @UPVTV, 20-07-2016
HYPE IT, equipo IGEM de la UPV

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