Difference between revisions of "Team:Valencia UPV/Notebook"

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<button type="button" onclick="location.href='https://2016.igem.org/Team:Valencia_UPV/Protocols'">ALISIA PROTOCOLOS POR AQUÍ</button>
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<li>Mix in an Eppendorf:</li>
  
<ul></ul><li>Mix in an Eppendorf:</li>
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<li>18 &mu;L of H<sub>2</sub>O milli-Q</li>
  
18 &mu;L of H<sub>2</sub>O milli-Q</li>
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<li>1 &mu;L forward primer</li>
  
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1 &mu;L reverse primer</li>
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Revision as of 09:04, 1 August 2016

Home


18/05/2016

Take glycerinated cultures of C58 Agrobacterium with dsRED from GoldenBraid Collection. Prepare broth culture (5 mL LB + 5 μL kanamycin + 5 μL Rifampin) 1:1000 and incubate overnight at 28°C.


19/05/2016

Refresh previously made culture by inoculating 10 μL in a new culture medium.


20/05/2016

Agroinfiltration in Nicotiana benthamiana of C58 with dsRED.


06/06/2016

  • Take from the glycerinates of Goldenbraid Collection:
PlasmidGB Code
pD6B3 α1GB0015
pD6B3 α2GB0017
pD6B3 Ω1GB0019
pD6B3 Ω2GB0021
pUPD2GB0307
  • Prepare liquid culture (3 mL LB + 3 μL antibiotic) 1:1000. Incubate at 37°C overnight.
  • Experiment with snails:

Let both N. benthamiana leafs with snails overnight at room temperature in separated boxes. We will observe if snails eat the leafs and if appears fluorescence.


15/06/2016

Experiment is over due to snails haven’t eaten leafs enough so we have not been able to see fluorescence.


30/06/2016

  • Orange DNA Genome Extraction protocol
  • Take from the glycerinates of GoldenBraid Collection:
PlasmidGB Code
Promoter 35s:Cas9:nopaline synthase terminator (Tnos)GB0639
Luciferase (Luc) in pUPD2GB0096
Tnos in pUPD2GB0037

01/07/2016

  • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
    • Promoter 35s:Cas9 : Tnos
  • Luciferase and nopaline synthase terminator cultures haven’t succeed. Repeat Luc and Tnos cultures.
  • Primers IG16JUN01 and IG16JUN02 have arrived.
  • Finish orange DNA Genome Extraction and check DNA concentration with NanoDrop. Concentration is very low so extraction will be done again.

02/07/2016

  • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
    • Luc in pUPD2
    • Tnos in pUPD2
  • Check orange DNA genome concentration with NanoDrop.
SampleDNA concentration (ng / μL)
Clemenules1 3153.8
Clemenules 2 4527.9
  • Perform a PCR to bind linker with luciferase:
ReagentVolume(μL)Program
LuciferasepUPD1TemperatureTime
Buffer HF1098°C5 minutes
dNTPs298°C35x30 seconds
IG16JUN012.570°C30 seconds
IG16JUN022.572°C1 minute 30 seconds
Taq phusion0.572°C10 minutes
H2O milli-Q31.516°C

04/07/2016

  • Run electrophoresis gel of Clemenules DNA (agarose 1%). 45 mL agarose gel at 1% 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 100 V.
  • Rice DNA Genome Extraction Protocol
  • Run electrophoresis gel of Luciferase PCR product. 45 mL agarose gel at 1% 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 100 V.
  • Ligate Reaction
  • Transform E. coli DH5α with it. The method that is necessary to carry out this procedure is explained in protocols
  • Check DNA concentration with NanoDrop.
SAMPLEDNA Concentration(ng / μL)
Rice Gleva 122.8
Rice Gleva 217.3

05/07/2016

  • Run electrophoresis gel of Gleva rice DNA. We have checked that there isn’t DNA.
  • Repeat: Rice DNA Genome Extraction
  • Check DNA concentration with NanoDrop.
SAMPLEDNA Concentration(ng / μL)
Rice Gleva 1294.9
Rice Gleva 2193.7
  • Run electrophoresis gel of Gleva rice DNA. It observed that genome extraction is correctly done.

06/07/2016

Take glycerinated cultures from Goldenbraid Collection:

GB partPlasmidAntibioticNumber GB
psgRNApUPDAmpicillin0645
U6-26pUPDAmpicillin1001

07/07/2016

  • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
    • psgRNA in pUPD2
    • U6-26 in pUPD2
  • Primers IG16JUL01, IG16JUL02, IG16JUL03, IG16JUL04, IG16JUL05, IG16JUL06, IG16JUL07 and IG16JUL08 arrived.
  • gBlocks of - promoter 35s:5’ region - have arrived.
  • We perform a PCR of orange and rice Genome Extraction following the protocol
SampleInitial concentration(ng/μL)Final concentration(ng/μL)Initial volume(μL)Final volume (μL)
Clemenules 13153.81504.756100
Clemenules 24527.91503.31100
Gleva 1294.915050.8647100
Gleva 2193.715077.44100
ReagentVolume(μL)Program
Clemenules DNA 11TemperatureTime
Buffer HF1098°C5 minutes
dNTPs298°C35x30 seconds
IG16JUL01 (TFL_For)2.564°C30 seconds
IG16JUL02 (TFL_Rev)2.572°C30 seconds
Taq phusion0.572°C10 minutes
H2O milli-Q31.516°C
ReagentVolume(μL)Program
Gleva DNA1TemperatureTime
Buffer HF1098°C5 minutes
dNTPs298°C35x30 seconds
IG16JUL03 (Ga20_for)2.572°C30 seconds
IG16JUL02 (Ga20_rev)2.572°C30 seconds
Taq phusion0.572°C10 minutes
H2O milli-Q31.516°C
  • Ligate reaction of promoter 35s:5’ region in pUPD2. Following ligation protocol , BsmbI enzyme is used in this reaction.

08/07/2016

  • Run electrophoresis gel of Clemenules and Gleva PCR products. 45 mL agarose gel at 1 % 0.45 g of agarose with 45 mL of TAE 1X. Voltage used is 120 V.
  • Transform E. coli with the next devise: promoter 35s:5’ region (electroporation 2.5KV). Plating it and incubate overnight at 37°C.
  • Take glycerinated culture for Georgia collaboration. The devise is promoter 35s:GFP:Tnos (α1 and kanamycin)

09/07/2016

  • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
    • promoter 35s:GFP:Tnos
  • No colonies have grown in the devise promoter 35s:5’ region petri dishes. Repeat transformation procedure, plating again and incubate overnight at 37°C.

11/07/2016

  • Pick a single E. coli DH5α (promoter 35s:5’ region in pUPD2) colony from the plate that has been incubated overnight. Inoculate a starter culture of 4 ml of LB medium with 4 μL of chloramphenicol in a 50 ml tube with the colony and incubate it overnight at 37°C with shaking.
  • Check Georgia miniprep concentration with NanoDrop (promoter 35s:GFP : Tnos)
SampleDNA Concentration(ng / μL)DNA Concentration(ng)
1105.25035.2
2104.65035.2
  • Targets ligations in pUPD2 (Orange Clemenules and Rice Gleva). Following ligation protocol , BsmbI enzyme is used in this reaction.

12/07/2016

  • Pick a single E. coli DH5α (target Gleva in pUPD2 and target Clemenules in pUPD2) colony from the plate that has been incubated overnight. Inoculate a starter culture of 4 ml of LB medium with 4 μL of chloramphenicol in a 50 ml tube with the colony and incubate it 16 hours at 37°C.
  • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
    • Promoter 35s:5’region in pUPD2
  • Digestion of minipreps with NotI. Incubate 1 hour at 37°C
  • Run electrophoresis gel of the following devise: promoter 35s:5’ region in pUPD2. We remain the samples 1 and 3.
  • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
    • Rice Gleva target in pUPD2
    • Orange Clemenules target in pUPD2
  • Digestion of minipreps with NotI. Incubate 1 hour at 37°C.
  • Run electrophoresis gel of the same devise:
    • Rice Gleva target in pUPD2
    • Orange Clemenules target in pUPD2
  • Ligation using Golden Braid assembly of the next devise:
    • Promoter 35s:5’ region:Target:Luc:Tnos in α1 plasmid.

13/07/2016

  • E. coli Transformation with the devise:
    • Promoter 35s:5’ region:Target:Luc:Tnos in α1 plasmid.
  • E. coli plating in plates with Kanamycin (antibiotic). Incubate overnight at 37°C

14/07/2016

  • Pick a single E. coli DH5α (promoter 35s:5’ region) colony from the plate that has been incubated overnight. Inoculate a starter culture of 4 ml of LB medium with 4 μL of chloramphenicol in a 50 ml tube with the colony and incubate it 16 hours at 37°C.
  • Primers IG16JUL09, IG16JUL10, IG16JUL11, IG16JUL12, IG16JUL13, IG16JUL14, IG16JUL15 and IG16JUL16 arrived.
  • Ligation using Golden Braid assembly of the next devises:
    • promoter 35s:5’ region:Clemenules target control positive:Luc:Tnos
    • promoter 35s:5’ region:Gleva target control positive:Luc:Tnos
    • promoter 35s:5’ region:Clemenules target consensus:Luc:Tnos
    • promoter 35s:5’ region:Gleva target consensus:Luc:Tnos
    • promoter U6-26:sgRNA Clemenules: psgRNA (scaffold)
    • promoter U6-26:sgRNA Gleva: psgRNA (scaffold)
  • Step 1: Annealing of oligonucleotides. Received primers are at 1uM. It is necessary taking to 10 uM.
  • Mix in an Eppendorf:
  • 18 μL of H2O milli-Q
  • 1 μL forward primer
  • 1 μL reverse primer
    • Step 2: Ligation reaction
    ReagentVolume (μL)
    Target control positive / Target consensus1
    promoter 35s:5’ region1
    Luciferase1
    Tnos1
    α1 plasmid1
    BSA10X1.2
    Ligase Buffer1.2
    BsaI1
    T4 ligase1
    H2O milli-Q2.6

    ReagentVolume (μL)
    sgRNA Clemenules / sgRNA Gleva1
    promoter U6 -261
    psgRNA (scaffold)1
    α1 plasmid1
    BSA10X1.2
    Ligase Buffer1.2
    BsaI1
    T4 ligase1
    H2O milli-Q3.6

    • E. coli Transformation with the devises previously explained.
    • E. coli plating in 6 plates (6 ligation reactions) with Kanamycin (antibiotic). Incubate overnight at 37°C.
    • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
      • Promoter 35s:5’ region : CL target : Luc : Tnos (3α1)
      • Promoter 35s:5’ region : A target : Luc : Tnos (3α1)
    • Digestion of minipreps with EcoRI. Incubate 1 hour at 37°C

    15/07/2016

    • Ligation using Golden Braid assembly of the next devises:
      • Promoter 35s:Cas9:Tnos – promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos
      • Promoter 35s:Cas9:Tnos – promoter 35s:5’ region:Ga20ox Rice target:Luc:Tnos
    • E. coli Transformation with the devises previously explained.
    • Run an electrophoresis gel of the products from the digestion of minipreps. The devises are:
      • Promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos (3α1)
      • Promoter 35s:5’ region :Ga20ox Rice target:Luc:Tnos (3α1)
    • Sequencing the following products:
      • Promotor 35s:5’ region in pUPD2 → correct

    16/07/2016

    • Transformations in E. coli DH5α with:
      • Promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos (3α1)
      • Promoter 35s:5’ region:Ga20ox Rice target:Luc:Tnos (3α1)
    • Plating the last devises in 2 plates with Agrobacterium C58. Incubate 2 days at 28°C.
    • Minipreps (2 samples for each devise) with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
      • Promoter 35s:5’ region:Clemenules target control positive:Luc:Tnos
      • Promoter 35s:5’ region:Gleva target control positive:Luc:Tnos
      • Promoter 35s:5’ region:Clemenules target consensus:Luc:Tnos
      • Promoter 35s:5’ region:Gleva target consensus:Luc:Tnos
      • Promoter U6-26:sgRNA Clemenules:psgRNA (scaffold)
      • Promoter U6-26:sgRNA Gleva:psgRNA (scaffold)
    • Ligation using Golden Braid assembly of the next devises:
      • Promotor 35s:Cas9:Tnos – U6:TFL Clemenules sgRNA:psgRNA (scaffold) (Ω1)
      • Promotor 35s:Cas9:Tnos – U6: Ga20ox Rice sgRNA:psgRNA (scaffold) (Ω1)
    ReagentVolume (μL)
    Promotor 35s:Cas9 : Tnos1
    U6-26:TFL Clemenules sgRNA:psgRNA / U6-26:Ga20ox rice sgRNA:psgRNA1
    3Ω11
    BSA10X1.2
    Ligase Buffer1.2
    BsmbI1
    T4 ligase1
    H2O milli-Q4.6
    • Digestion of the minipreps with EcoRI which have been done before. Incubate 1 hour at 37°C. There is a total of twelve minipreps. It has been followed the Miniprep digestion protocol .
    • Run electrophoresis gel of the digestion products.
    LanesSamplesVerification
    11 Kb molecular weight marker
    2gRNA Ga20ox 1
    3gRNA Ga20ox 2
    4Ga20ox consensus 1
    5Ga20ox consensus 2
    6Ga20ox knock-out 1
    7Ga20ox knock-out 2
    8TFL consensus 1
    9TFL consensus 2
    10TFL knock-out 1
    11TFL knock-out 2
    12TFL gRNA 1
    13TFL gRNA 2
    141 Kb molecular weight marker
    • Pick a single E. coli DH5α colony from the plates that have been incubated overnight. The devises are:
      • Promoter 35s:TFL Knock-out:Luc:Tnos (4 samples)
      • Promoter U6-26:Ga20ox sgRNA:psgRNA (2 samples)
    • Inoculate a starter culture of 4 ml of LB medium with 4 μL of kanamycin in a 50 ml tube with the colony and incubate it 16 hours at 37°C.

    17/07/2016

    • Transformation in DH5α E. coli with:
      • Promoter 35s:Cas9:Tnos – U6:TFL Clemenules sgRNA:psgRNA (scaffold) (Ω1)
      • Promoter 35s:Cas9:Tnos – U6:Ga20ox sgRNA:psgRNA (scaffold) (Ω1)
    • Plating E. coli transformations in plates with LB + agar + IPTG + XGal and incubate it overnight at 37°C.
    • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
      • Promoter U6-26:Ga20ox sgRNA:psgRNA
      • Promoter 35s:5’ region:TFL Knock-out:Luc:Tnos (3α1)
    • Digestion of the minipreps with EcoRI which have been done before. Incubate 1 hour at 37°C. There is a total of six minipreps. It has been followed the Miniprep digestion protocol .
    • Run an electrophoresis gel of the digestion products.
    LanesSamplesVerification
    11 Kb molecular weight marker
    2gRNA Ga20ox 1
    3gRNA Ga20ox 2
    4gRNA Ga20ox 3
    5gRNA Ga20ox 4
    6TFL knock-out 1
    7TFL knock-out 2
    81 Kb molecular weight marker

    However, despite the fact that electrophoresis gel have correctly run, we have decided to repeat the ligation reactions. We have not get the expected results for a gRNA.

    • Ligation using Golden Braid assembly of the next devises:
      • Promoter 35s:5’ region:TFL Clemenules target control positive:Luc:Tnos
      • Promoter 35s:5’ region:Ga20ox Gleva target control positive:Luc:Tnos
      • Promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos
      • Promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos
      • Promoter U6-26:sgRNA Clemenules:psgRNA (scaffold)
      • Promoter U6-26:sgRNA Gleva:psgRNA (scaffold)
    ReagentVolume(μL)ReagentVolume(μL)
    TFL/Ga20ox gRNA1promoter 35s:5’region1
    U6-261TFL/Ga20ox consensus TFL/Ga20ox knock-out1
    psgRNA1luciferase1
    3α11Tnos1
    BSA10X1.23α11
    Ligase Buffer1.2BSA10X1.2
    BsaI1Ligase Buffer1.2
    T4 ligase1BsmbI1
    H2O milli-Q3.6T4 ligase1
    H2O milli-Q2.6

    18/07/2016

    • Transformation in DH5α E. coli with ligation products (consensus targets and knock-out targets of TFL and Ga20ox as well as their gRNAs)
    • Plating E. coli transformations in plates with LB + agar + IPTG + XGal and incubate it overnight at 37°C.
    • Pick a single Agrobacterium C58 colony from the plates that have been incubating since 16/06/2016. The devises are:
      • Promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos (3α1)
      • Promoter 35s:5’ region:Ga20ox Rice target:Luc:Tnos (3α1)
    • Incubate it 48 hours at 28°C.

    19/07/2016

    • Pick transformed E. coli colony from the incubated plates. The devises are:
      • promoter 35s:5’ region:TFL Clemenules target control positive:Luc:Tnos
      • promoter 35s:5’ region:Ga20ox Gleva target control positive:Luc:Tnos
      • promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos
      • promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos
      • promoter U6-26: sgRNA Clemenules:psgRNA (scaffold)
      • promoter U6-26: sgRNA Gleva:psgRNA (scaffold)
    • Incubate it overnight at 37°C.

    20/07/2016

    • Miniprep with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
      • promoter 35s:5’ region:TFL Clemenules target knock-out:Luc:Tnos
      • promoter 35s:5’ region:Ga20ox Gleva target control knock-out:Luc:Tnos
      • promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos
      • promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos
      • promoter U6-26:sgRNA TFL Clemenules:psgRNA (scaffold)
      • promoter U6-26:sgRNA Ga20ox Gleva:psgRNA (scaffold)
    • Digestion of the minipreps with EcoRI which have been done before. Incubate 1 hour at 37°C. There is a total of six minipreps. It has been followed the Miniprep digestion protocol .
    • Run an electrophoresis gel of the digestion products. We will keep the minipreps with “1”.
    LanesSamplesVerification
    11 Kb molecular weight marker
    2gRNA TFL 1
    3gRNA TFL 2
    4TFL consensus 1
    5TFL consensus 2
    6TFL knock-out 1
    7TFL knock-out 2
    81 Kb molecular weight marker
    9gRNA Ga20ox 1
    10gRNA Ga20ox 2
    11Ga20ox consensus 1
    12Ga20ox consensus 2
    13Ga20ox knock-out 1
    14Ga20ox knock-out 2
    151 Kb molecular weight marker
    • Ligation using Golden Braid assembly of the next devises. Is used the restriction enzyme BsmbI.
      • promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA
      • Promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA

    21/07/2016

    • Transformations in E. coli DH5α with:
      • promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA
      • promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA

    Incubate 2 hours at 37°C.

    • Plating E. coli transformation explained before and incubate it at 37°C overnight.
    • Agrobacterium C58 transformation with:
      • promoter 35s:5’ region:TFL Clemenules target knock-out:Luc:Tnos
      • promoter 35s:5’ region:Ga20ox Gleva target control knock-out:Luc:Tnos
      • promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos
      • promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos

    Incubate 48 hours at 28°C.


    22/07/2016

    • Sequencing reaction:
    ReagentVolume (μL)
    Primer in order to sequence3
    Miniprep reaction5
    H2O milli-Q6
    SequenceOrder
    TFL gRNA210.13.201
    Ga20 gRNA210.13.202
    • Ordered the necessary primers to sequence: TFL consensus, TFL knockout, Ga20ox consensus and Ga20ox knockout.
    • E. coli transformations with:
      • Promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA: psgRNA
    • Plating the last devise in plates with Agrobacterium C58. Plates contain spec + IPTG + X-Gal. Incubate 2 days at 28°C.
    • Pick a single E. coli DH5α (promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA and promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA) colony from the plates that has been incubated overnight. Inoculate a starter culture of 4 ml of LB medium with 4 μL of spectinomycin in a 50 ml tube with the colony and incubate it overnight at 37°C with shaking.

    23/07/2016

    • Minipreps (4 samples for each devise) with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
      • promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA
      • promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA
    • Digestion of minipreps with BamHI following digestion protocol . Incubate 1 hour at 37°C.
    • Run an electrophoresis gel of the digestion products. We will keep the minipreps with the sample number 4 for TFL sgRNA and the sample number 2 for Ga20ox sgRNA.
    • Pick a single Agrobacterium C58 (promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA and promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA ) colony from the plates that has been incubated overnight. Inoculate a starter culture of 5 ml of LB medium with 5 μL of spectinomycin and kanamycin in a falcon tube with the colony and incubate it overnight at 28°C with shaking.
    • Agrobacterium C58 transformations with:
      • promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA
      • promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA

    24/07/2016

    • Store the next cultures at -80°C:
      • promoter 35s:5’ region in pUPD2 (DH5α) number 1
      • Linker: luciferase in pUPD2 (DH5α) number 2

    25/07/2016

    • Pick a single Agrobacterium C58 (promoter 35s:Cas 9:Tnos – U6-26:TFL sgRNA:psgRNA in 3Ω1 and promoter 35s:Cas 9:Tnos – U6-26:Ga20ox sgRNA:psgRNA in 3Ω1 ) colony from the plates that has been incubated overnight. Inoculate a starter culture of 5 ml of LB medium with 5 μL of spectinomycin and kanamycin in a falcon tube with the colony and incubate it overnight at 28°C with shaking.
    • Incubate it 48 hours at 28°C
    • Minipreps of Agrobacterium with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
      • promoter 35s:5’ region:TFL Clemenules target control positive:Luc:Tnos
      • promoter 35s:5’ region:Ga20ox Gleva target control positive:Luc:Tnos
      • promoter 35s:5’ region:TFL Clemenules target consensus:Luc:Tnos
      • promoter 35s:5’ region:Ga20ox Gleva target consensus:Luc:Tnos
    • Digestion of minipreps with the restriction enzyme EcoRI. Incubate 1 hour at 37°C.
    • Run an electrophoresis gel of the digestion products.
    LanesSamplesVerification
    11 Kb molecular weight marker
    2Target Ga20ox consensus
    3Target Ga20ox Knock-out
    4Target TFL consensus
    5Target TFL knock-out
    61 Kb molecular weight marker

    26/07/2016

    • Minipreps with E.Z.N.A. ® Plasmid Mini Kit I, Q(capless) Spin of:
      • promoter 35s:5’ region:TFL Clemenules target:Luc:Tnos in 3α1 plasmid from C58 Agrobacterium
      • promoter 35s:5’ region:Ga20ox Gleva target:Luc:Tnos in 3α1 plasmid from C58 Agrobacterium
    • Digestion of minipreps with the restriction enzyme EcoRI. Incubate 1 hour at 37°C.
    • Run an electrophoresis gel of the digestion products:
    LanesSamplesVerification
    11 Kb molecular weight marker
    2promoter 35s:5’ region:Target Ga20ox Rice:Luc:Tnos
    3promoter 35s:5’ region:Target TFL Clemunules:Luc:Tnos
    61 Kb molecular weight marker