(Created page with "{{Kyoto_Common}} <html> <style> #background{ position:fixed; min-width: 1024px; width:100%; z-index:-1; } #background-image{ width:100%; } #top...") |
|||
Line 169: | Line 169: | ||
<div id="contents"> | <div id="contents"> | ||
+ | <div class="kyoto-calendar"> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=7>August</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td>1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>2</td> | ||
+ | <td>3</td> | ||
+ | <td>4</td> | ||
+ | <td>5</td> | ||
+ | <td>6</td> | ||
+ | <td>7</td> | ||
+ | <td>8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>9</td> | ||
+ | <td>10</td> | ||
+ | <td>11</td> | ||
+ | <td>12</td> | ||
+ | <td>13</td> | ||
+ | <td><a href="#0814">14</a></td> | ||
+ | <td><a href="#0815">15</a></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td><a href="#0816">16</a></td> | ||
+ | <td><a href="#0817">17</a></td> | ||
+ | <td><a href="#0818">18</a></td> | ||
+ | <td><a href="#0819">19</a></td> | ||
+ | <td><a href="#0820">20</a></td> | ||
+ | <td><a href="#0821">21</a></td> | ||
+ | <td>22</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>23</td> | ||
+ | <td><a href="#0824">24</a></td> | ||
+ | <td><a href="#0825">25</a></td> | ||
+ | <td><a href="#0826">26</a></td> | ||
+ | <td><a href="#0827">27</a></td> | ||
+ | <td>28</td> | ||
+ | <td>29</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>30</td> | ||
+ | <td>31</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <th colspan=7>September</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td>1</td> | ||
+ | <td>2</td> | ||
+ | <td>3</td> | ||
+ | <td>4</td> | ||
+ | <td>5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6</td> | ||
+ | <td>7</td> | ||
+ | <td><a href="#0908">8</a></td> | ||
+ | <td><a href="#0909">9</a></td> | ||
+ | <td>10</td> | ||
+ | <td>11</td> | ||
+ | <td>12</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>13</td> | ||
+ | <td><a href="#0914">14</a></td> | ||
+ | <td><a href="#0915">15</a></td> | ||
+ | <td><a href="#0916">16</a></td> | ||
+ | <td><a href="#0917">17</a></td> | ||
+ | <td>18</td> | ||
+ | <td>19</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>20</td> | ||
+ | <td>21</td> | ||
+ | <td>22</td> | ||
+ | <td>23</td> | ||
+ | <td>24</td> | ||
+ | <td>25</td> | ||
+ | <td>26</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>27</td> | ||
+ | <td>28</td> | ||
+ | <td>29</td> | ||
+ | <td>30</td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | <td></td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0814" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/14</h3></span> | ||
+ | <span class="keln_exp"><h4>Transformation</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino, Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample Name</th><th>Sample Volume (µl)</th><th>Competent Cells/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>RFP 0.5ng/µl</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>RFP 5ng/µl</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>RFP 10ng/µl</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>RFP 20ng/µl</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>RFP 50ng/µl</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0814" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/14</h3></span> | ||
+ | <span class="keln_exp"><h4>Gel Extraction</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino, Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>10/1 PQ(3)</td><td>about 23.5</td></tr> | ||
+ | <tr><td>2</td><td>1kb ladder</td><td>6</td></tr> | ||
+ | <tr><td>3</td><td>10/1 PQ(3)</td><td>about 23.5</td></tr> | ||
+ | <tr><td>4</td><td>10/1 PQ(3)</td><td>about 24</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/7/7a/T--Kyoto--8_14_No1_Gel_Extraction_Notsu_09_19_12_14_09No.20814.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">Total volume of samples of lane 1~3 was 71.5µl and it was divided into three.</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Egashira --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0814" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/14</h3></span> | ||
+ | <span class="keln_exp"><h4>Transformation</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino, Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample Name</th><th>Sample Volume</th><th>Competent Cells/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>3C5</td><td>10µl</td><td>DH5α 20µl</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>P+</td><td>10µl</td><td>DH5α 20µl</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>P-</td><td>10µl</td><td>DH5α 20µl</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>RBS</td><td>10µl</td><td>DH5α 20µl</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0814" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/14</h3></span> | ||
+ | <span class="keln_exp"><h4>Liquid Culture</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino, Iguchi, Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>8/13 transformation RFP 20ng/µl colony1</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony1</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony2</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony3</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony4</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony5</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony6</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony7</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony8</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony9</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony10</td><td>LB(CP)</td></tr> | ||
+ | <tr><td>8/13 transformation part RFP colony11</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0815" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/15</h3></span> | ||
+ | <span class="keln_exp"><h4>Miniprep</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino, Notsu, Kaneko, Watanabe</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>RFP1 /2µl</td><td>82.5</td><td>1.40</td><td>1.22</td></tr> | ||
+ | <tr><td>RFP2 /4µl</td><td>142.5</td><td>1.69</td><td>2.05</td></tr> | ||
+ | <tr><td>RFP3 /4µl</td><td>50</td><td>1.55</td><td>1.71</td></tr> | ||
+ | <tr><td>RFP4 /4µl</td><td>57.5</td><td>1.64</td><td>1.88</td></tr> | ||
+ | <tr><td>RFP6 /4µl</td><td>98.75</td><td>1.71</td><td>1.40</td></tr> | ||
+ | <tr><td>RFP(20) /4µl</td><td>76.25</td><td>1.67</td><td>1.32</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Egashira --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0815" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/15</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Notsu, Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder 3µl</td></tr> | ||
+ | <tr><td>2</td><td>RFP1 10µl</td></tr> | ||
+ | <tr><td>3</td><td>RFP2 10µl</td></tr> | ||
+ | <tr><td>4</td><td>RFP3 10µl</td></tr> | ||
+ | <tr><td>5</td><td>RFP4 10µl</td></tr> | ||
+ | <tr><td>6</td><td>RFP6 10µl</td></tr> | ||
+ | <tr><td>7</td><td>RFP(20) 10µl</td></tr> | ||
+ | <tr><td>8</td><td>PCR1 5µl</td></tr> | ||
+ | <tr><td>9</td><td>PCR2 5µl</td></tr> | ||
+ | <tr><td>10</td><td>PCR3 5µl</td></tr> | ||
+ | <tr><td>11</td><td>PCR4 5µl</td></tr> | ||
+ | <tr><td>12</td><td> PCR5 5 µl</td></tr> | ||
+ | <tr><td>13</td><td>1kb ladder 3µl</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/5/5e/T--Kyoto--8_15_No6_Electrophoresis_Egashira_02_08_02_44_07.JPG"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Egashira --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0815" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/15</h3></span> | ||
+ | <span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span> | ||
+ | <span class="keln_researcher">Uchino, Notsu, Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffer/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>8/15Miniprep PSB1C3-RFP1</td><td>24</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>19</td><td>50</td></tr> | ||
+ | <tr><td>8/15Miniprep PSB1C3-RFP2</td><td>14</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>29</td><td>50</td></tr> | ||
+ | <tr><td>8/15Miniprep PSB1C3-RFP3</td><td>40</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>3</td><td>50</td></tr> | ||
+ | <tr><td>8/15Miniprep PSB1C3-RFP4</td><td>35</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>8</td><td>50</td></tr> | ||
+ | <tr><td>8/15Miniprep PSB1C3-RFP6</td><td>20</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>23</td><td>50</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0815" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/15</h3></span> | ||
+ | <span class="keln_exp"><h4>colony PCR</h4></span> | ||
+ | <span class="keln_researcher">Uchino, Notsu, Kaneko, Watanabe</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>colony Primers</th></tr> | ||
+ | <tr><td>8/14 transformation pSB1C3-RFP1 VF+VR</td></tr> | ||
+ | <tr><td>8/14 transformation pSB1C3-RFP2 VF+VR</td></tr> | ||
+ | <tr><td>8/14 transformation pSB1C3-RFP3 VF+VR</td></tr> | ||
+ | <tr><td>8/14 transformation pSB1C3-RFP4 VF+VR</td></tr> | ||
+ | <tr><td>8/14 transformation pSB1C3-RFP1 VF+VR</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0815" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/15</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Steps)</h4></span> | ||
+ | <span class="keln_researcher">Uchino, Notsu, Kaneko, Watanabe</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr> | ||
+ | <tr><td>Pre Denature</td><td>94℃</td><td>2min</td><td>1</td></tr> | ||
+ | <tr><td>Denature</td><td>94℃</td><td>30sec</td><td>30</td></tr> | ||
+ | <tr><td>Annealing</td><td>55℃</td><td>30sec</td><td>30</td></tr> | ||
+ | <tr><td>Extension</td><td>68℃</td><td>1min</td><td>30</td></tr> | ||
+ | <tr><td>Final elongation</td><td>4℃</td><td>7min</td><td>1</td></tr> | ||
+ | <tr><td>Final Holding</td><td>4℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0816" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/16</h3></span> | ||
+ | <span class="keln_exp"><h4>Gel Extraction</h4></span> | ||
+ | <span class="keln_researcher">Li, Iguchi, Notsu, Kaneko, Watanabe</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>10</td></tr> | ||
+ | <tr><td>2</td><td>blank</td><td></td></tr> | ||
+ | <tr><td>3</td><td>8/15 digestion pSB1C3-RFP 1</td><td>55</td></tr> | ||
+ | <tr><td>4</td><td>8/15 digestion pSB1C3-RFP 2</td><td>55</td></tr> | ||
+ | <tr><td>5</td><td>8/15 digestion pSB1C3-RFP 3</td><td>36</td></tr> | ||
+ | <tr><td>6</td><td>8/15 digestion pSB1C3-RFP 4</td><td>36</td></tr> | ||
+ | <tr><td>7</td><td>8/15 digestion pSB1C3-RFP 6</td><td>36</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/7/77/T--Kyoto--8_16_No10_Gel_Extraction_Notsu_09_26_01_32_24.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0816" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/16</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Li, Iguchi, Notsu, Kaneko, Watanabe</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>8/16 Gel Extraction RFP1 /1</td><td></td></tr> | ||
+ | <tr><td>2</td><td>8/16 Gel Extraction RFP2 /1</td><td></td></tr> | ||
+ | <tr><td>3</td><td>8/16 Gel Extraction RFP3 /1</td><td></td></tr> | ||
+ | <tr><td>4</td><td>8/16 Gel Extraction RFP4 /1</td><td></td></tr> | ||
+ | <tr><td>5</td><td>blank</td><td></td></tr> | ||
+ | <tr><td>6</td><td>8/16 pSB1C3-vector /1</td><td></td></tr> | ||
+ | <tr><td>7</td><td>8/16 pSB1C3-vector /1</td><td></td></tr> | ||
+ | <tr><td>8</td><td>1kladder</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/6/6f/T--Kyoto--8_16_No11_Electrophoresis_Notsu_09_26_01_55_23.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0816" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/16</h3></span> | ||
+ | <span class="keln_exp"><h4>Ligation</h4></span> | ||
+ | <span class="keln_researcher">Li, Iguchi, Notsu, Kaneko, Watanabe</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Vector DNA /(µl)</th><th>insert DNA /(µl)</th><th>ligase /(µl)</th><th>10×buffer /(µl)</th><th>MilliQ /(µl)</th><th>Total /(µl)</th></tr> | ||
+ | <tr><td>pSB1C3 EPcut /1</td><td>RFP /4</td><td>0.5</td><td>1</td><td>3</td><td>9.5</td></tr> | ||
+ | <tr><td>pSB1C3 EPcut /1</td><td>RFP /2</td><td>0.5</td><td>1</td><td>5</td><td>9.5</td></tr> | ||
+ | <tr><td>pSB1C3 EPcut /1</td><td>RFP /4</td><td>0.5</td><td>1</td><td>3</td><td>9.5</td></tr> | ||
+ | <tr><td>pSB1C3 EPcut /1</td><td>RFP /4</td><td>0.5</td><td>1</td><td>3</td><td>9.5</td></tr> | ||
+ | <tr><td>pSB1C3 EPcut /1</td><td>-</td><td>0.5</td><td>1</td><td>7</td><td>9.5</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0817" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/17</h3></span> | ||
+ | <span class="keln_exp"><h4>Liquid Culture</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>8/16 transformation pSB3C5 RFP1</td><td>LB(CP) /6</td></tr> | ||
+ | <tr><td>8/16 transformation pSB3C5 RFP2</td><td>LB(CP) /6</td></tr> | ||
+ | <tr><td>8/16 transformation pSB3C5 RFP1</td><td>LB(CP) /6</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0817" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/17</h3></span> | ||
+ | <span class="keln_exp"><h4>Transformation</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample Name</th><th>Sample Volume (µl)</th><th>Competent Cells/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>pSB1C3 P+</td><td>2</td><td>DH5α /20</td><td>LB</td></tr> | ||
+ | <tr><td>pSB1C3 P-</td><td>2</td><td>DH5α /20</td><td>LB</td></tr> | ||
+ | <tr><td>pSB1C3 RBS</td><td>2</td><td>DH5α /20</td><td>LB</td></tr> | ||
+ | <tr><td>pSB3C5 RFP</td><td>2</td><td>DH5α /20</td><td>LB</td></tr> | ||
+ | <tr><td>8/16 ligation pSB1C3 RFP1</td><td>2</td><td>DH5α</td><td>LB</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Notsu --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0817" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/17</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Iguchi</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kbp ladder /3</td><td></td></tr> | ||
+ | <tr><td>2</td><td>blank</td><td></td></tr> | ||
+ | <tr><td>3</td><td>pSB1C3-RFP(ligate)1 /2</td><td></td></tr> | ||
+ | <tr><td>4</td><td>pSB1C3-RFP(ligate)2 /2</td><td></td></tr> | ||
+ | <tr><td>5</td><td>pSB1C3-RFP(ligate)3 /2</td><td></td></tr> | ||
+ | <tr><td>6</td><td>pSB1C3-RFP(ligate)4 /3</td><td></td></tr> | ||
+ | <tr><td>7</td><td>Vector (Ctrl) /5</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/c/c7/T--Kyoto--8_17_No14_Electrophoresis_Notsu_09_29_12_26_11.JPG"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0818" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/18</h3></span> | ||
+ | <span class="keln_exp"><h4>Liquid Culture</h4></span> | ||
+ | <span class="keln_researcher">Li, Iguchi, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>INP [1] BBa_K811005</td><td>LB(CP) / 6ml</td></tr> | ||
+ | <tr><td>INP [2] BBa_K811005</td><td>LB(CP) / 6ml</td></tr> | ||
+ | <tr><td>INP [3] BBa_K811005</td><td>LB(CP) / 6ml</td></tr> | ||
+ | <tr><td>scfv04 [1] BBa_K875004</td><td>LB(CP) / 6ml</td></tr> | ||
+ | <tr><td>scfv04 [2] BBa_K875004</td><td>LB(CP) / 6ml</td></tr> | ||
+ | <tr><td>scfv04 [3] BBa_K875004</td><td>LB(CP) / 6ml</td></tr> | ||
+ | <tr><td>scfv06 [1] BBa__K875006</td><td>LB(CP) / 6ml</td></tr> | ||
+ | <tr><td>scfv06 [2] BBa_K875006</td><td>LB(CP) / 6ml</td></tr> | ||
+ | <tr><td>scfv06 [3] BBa_K875006</td><td>LB(CP) / 6ml</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0818" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/18</h3></span> | ||
+ | <span class="keln_exp"><h4>Miniprep</h4></span> | ||
+ | <span class="keln_researcher">Li, Iguchi, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>8/17 Liquid Culture 3C5 [1] / 5µl</td><td>77</td><td>1.69</td><td>1.45</td></tr> | ||
+ | <tr><td>8/17 Liquid Culture 3C5 [2] / 2µl</td><td>40</td><td>1.67</td><td>1.17</td></tr> | ||
+ | <tr><td>8/17 Liquid Culture 3C5 [3] / 2µl</td><td>15</td><td>3.75</td><td>3.70</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0818" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/18</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder /1</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>[1] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr> | ||
+ | <tr><td>3</td><td>[2] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr> | ||
+ | <tr><td>4</td><td>[1'] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr> | ||
+ | <tr><td>5</td><td>[2'] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr> | ||
+ | <tr><td>6</td><td>[3'] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/c/c5/T--Kyoto--8_18_No18_Electrophoresis_Kaneko_05_20_04_12_53.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img18]</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0818" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/18</h3></span> | ||
+ | <span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span> | ||
+ | <span class="keln_researcher">Li, Iguchi, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffer/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td></td><td>psb3c5(8/18miniprep) [1'], [2'], [3'] mixed / 50</td><td>1.0</td><td></td><td></td><td>1.0</td><td>5.6</td><td></td><td></td><td>56.6</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0819" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/19</h3></span> | ||
+ | <span class="keln_exp"><h4>Transformation</h4></span> | ||
+ | <span class="keln_researcher">Li, Iguchi, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample Name</th><th>Sample Volume (µl)</th><th>Competent Cells/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>BBa_ J61002 p+</td><td>2</td><td>DH5a /20</td><td>LB(Amp)</td></tr> | ||
+ | <tr><td>BBa_J61002 p-</td><td>2</td><td>DH5a /20</td><td>LB(Amp)</td></tr> | ||
+ | <tr><td>BBa_1A2 RBS</td><td>2</td><td>DH5a /20</td><td>LB(Amp)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p class="keln_note">Failed due to deactivation of Amp</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0819" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/19</h3></span> | ||
+ | <span class="keln_exp"><h4>MutationPCR</h4></span> | ||
+ | <span class="keln_researcher"></span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Templates /µl</th><th>Primer /µl</th><th>Primer STAR Max Premix /µl</th><th>MilliQ /µl</th><th>Total(µl)</th></tr> | ||
+ | <tr><td>scfv plasmid /0.1</td><td>m.scfv FW /1, m.scfvRV/1</td><td>25</td><td>22.9</td><td>50</td></tr> | ||
+ | <tr><td>scfv plasmid (nega) /0.1</td><td>0</td><td>5</td><td>4.9</td><td>10</td></tr> | ||
+ | <tr><td>(nega) /0</td><td>m.scfv FW/0.2, m.scfvRV/0.2</td><td>5</td><td>4.6</td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p class="keln_note">---30cycle---<br>98℃ 10''<br>55℃ 15''<br>72℃ 20''<br>----------------<br>4℃ holding</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0819" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/19</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder/2</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>scfv plasmid +primer(m.scfv FW, m.scfv RV) mutation PCR product /5</td><td>3600</td></tr> | ||
+ | <tr><td>3</td><td>scfv plasmid mutation PCR product /5</td><td>-</td></tr> | ||
+ | <tr><td>4</td><td>primer(m.scfv FW, m.scfv RV) mutation PCR product /5</td><td>-</td></tr> | ||
+ | <tr><td>5</td><td>psb3c5 EPcut product /5</td><td>2600(backborn), 1200(inseert<RFP>)</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/6/64/T--Kyoto--8_19_No22_Electrophoresis_Kaneko_05_20_04_27_06.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img22]</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0819" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/19</h3></span> | ||
+ | <span class="keln_exp"><h4>Concentration</h4></span> | ||
+ | <span class="keln_researcher">Li, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample</th><th>OD600</th><th>Bacterial cells /ml</th></tr> | ||
+ | <tr><td>INP [1] K811005</td><td>0.643</td><td>5.14x10^8</td></tr> | ||
+ | <tr><td>scfv06 K875006</td><td>0.634</td><td>5.07x10^8</td></tr> | ||
+ | <tr><td>scfv04 K875004</td><td>0.618</td><td>4.94x10^8</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p class="keln_note">1 OD 600 equals to 8x10^8 cells /ml</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0819" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/19</h3></span> | ||
+ | <span class="keln_exp"><h4>Miniprep</h4></span> | ||
+ | <span class="keln_researcher">Li, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>scfv 04[1] K875004 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | <tr><td>scfv 04[2] K875004 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | <tr><td>scfv 04[3] K875004 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | <tr><td>scfv 06[1] K875006 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | <tr><td>scfv 06[2] K875006 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | <tr><td>scfv 06[3] K875006 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | <tr><td>INP [1] K811005 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | <tr><td>INP [2] K811005 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | <tr><td>INP [3] K811005 /3µl</td><td>56</td><td>1.63</td><td>1.45</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p class="keln_note">There was a problem with an instrument</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0820" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/20</h3></span> | ||
+ | <span class="keln_exp"><h4>Transformation</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample Name</th><th>Sample Volume (µl)</th><th>Competent Cells/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>8/19 mutation PCR scfv plasmid (nega)</td><td>1</td><td>DH5a/ 20</td><td>LB(CP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p class="keln_note">8/19 mutation PCR:<br>1µl extraction of scfv plasmid (nega)/10µl was folded 300 times.</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0820" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/20</h3></span> | ||
+ | <span class="keln_exp"><h4>Transformation</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample Name</th><th>Sample Volume (µl)</th><th>Competent Cells/(µl)</th><th>Medium</th></tr> | ||
+ | <tr><td>8/19 mutation PCR scfv plasmid</td><td>1 [note:1]</td><td>DH5a/20</td><td>LB(AMP)</td></tr> | ||
+ | <tr><td>8/19 mutation PCR scfv plasmid (nega)</td><td>1 [note:2]</td><td>DH5a/20</td><td>LB(AMP)</td></tr> | ||
+ | <tr><td>BBa_J61002 p+</td><td>1</td><td>DH5a/20</td><td>LB(AMP)</td></tr> | ||
+ | <tr><td>BBa_J61002 p-</td><td>1</td><td>DH5a/20</td><td>LB(AMP)</td></tr> | ||
+ | <tr><td>BBa_1A2 RBS</td><td>1</td><td>DH5a/20</td><td>LB(AMP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p class="keln_note">[note:1]<br>8/19 mutation PCR:<br>1µl extraction of scfv plasmid (nega)/50µl was folded 300 times.<br>[note:2]<br>8/19 mutation PCR:<br>1µl extraction of scfv plasmid (nega)/10µl was folded 300 times.</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0820" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/20</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder /1.5</td><td></td></tr> | ||
+ | <tr><td>2</td><td>9/19 miniprep scfv04 [1]</td><td></td></tr> | ||
+ | <tr><td>3</td><td>9/19 miniprep scfv04 [2]</td><td></td></tr> | ||
+ | <tr><td>4</td><td>9/19 miniprep scfv04 [3]</td><td></td></tr> | ||
+ | <tr><td>5</td><td>9/19 miniprep scfv06 [1]</td><td></td></tr> | ||
+ | <tr><td>6</td><td>9/19 miniprep scfv06 [2]</td><td></td></tr> | ||
+ | <tr><td>7</td><td>9/19 miniprep scfv06 [3]</td><td></td></tr> | ||
+ | <tr><td>8</td><td>9/19 miniprep INP [1]</td><td></td></tr> | ||
+ | <tr><td>9</td><td>9/19 miniprep INP [2]</td><td></td></tr> | ||
+ | <tr><td>10</td><td>9/19 miniprep INP [3]</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/5/53/T--Kyoto--8_20_No26_Electrophoresis_Kaneko_05_20_04_44_45.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img26]</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>Colony PCR</h4></span> | ||
+ | <span class="keln_researcher">Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Colony</th><th>Primers</th></tr> | ||
+ | <tr><td>8/20 transformation RBS</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/20 transformation p+</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/20 transformation p-</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/20 dilution INP</td><td>VF+VR</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Steps)</h4></span> | ||
+ | <span class="keln_researcher">Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr> | ||
+ | <tr><td>Pre</td><td>94℃</td><td>2min</td><td>1</td></tr> | ||
+ | <tr><td>De</td><td>94℃</td><td>30 sec</td><td>30</td></tr> | ||
+ | <tr><td>An</td><td>55℃</td><td>30 sec</td><td>30</td></tr> | ||
+ | <tr><td>Ex</td><td>68℃</td><td>1min</td><td>30</td></tr> | ||
+ | <tr><td>Final E</td><td>4℃</td><td>7min</td><td>1</td></tr> | ||
+ | <tr><td>Final Hold</td><td>4℃</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <p class="keln_note">Autoclaved distrilled water /23µl<br>2xQuick taq /25µl<br>10 pmol/µl primer (VF) /1µl<br>10 pmol/µl primer (VR) /1µl<br>Template DNA /0µl<br>Total 50µl</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder /2</td><td></td></tr> | ||
+ | <tr><td>2</td><td>8/21 colony PCR RBS /all</td><td></td></tr> | ||
+ | <tr><td>3</td><td>8/21 colony PCR p+ /all</td><td></td></tr> | ||
+ | <tr><td>4</td><td>8/21 colony PCR p- /all</td><td></td></tr> | ||
+ | <tr><td>5</td><td>8/21 colony PCR INP /all</td><td></td></tr> | ||
+ | <tr><td>6</td><td>8/21 colony PCR Nega /all</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/0/04/T--Kyoto--8_21_No28_Electrophoresis_Kaneko_05_20_04_54_01%2C1.jpg"><img src="https://static.igem.org/mediawiki/2016/b/b5/T--Kyoto--8_21_No28_Electrophoresis_Kaneko_05_20_04_54_01%2C2.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img29-1]<br>weak band except INP -> retry<br>colony PCR and Electrophoresis were conducted under the same condition.<br>[img29-2]<br>RBS and INP success.<br>P+ and P- failed -> retry.</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Steps)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr> | ||
+ | <tr><td>Predenature</td><td>95℃</td><td>3min</td><td>1</td></tr> | ||
+ | <tr><td>Denature</td><td>98℃</td><td>20sec</td><td>25</td></tr> | ||
+ | <tr><td>Annealing</td><td>70℃</td><td>15sec</td><td>25</td></tr> | ||
+ | <tr><td>Extension</td><td>72℃</td><td>30sec</td><td>25</td></tr> | ||
+ | <tr><td>Final Elongation</td><td>72℃</td><td>5min</td><td>1</td></tr> | ||
+ | <tr><td>Final Holding</td><td>4℃</td><td>-</td><td>1</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Target)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Templates/(µl)</th><th>Primer1/(µl)</th><th>Primer2/(µl)</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Any Other/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>scfv 8/20 transformation</td><td>cscfv.f /0.75</td><td>cscfv.r /0.75</td><td>2x KAPA Hifi /12.5</td><td>11</td><td></td><td>25</td></tr> | ||
+ | <tr><td>- (nega)</td><td>cscfv.f /0.3</td><td>cscfv.f /0.3</td><td>2x KAPA Hifi /5</td><td>4.4</td><td></td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>Colony PCR</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Colony</th><th>Primers</th></tr> | ||
+ | <tr><td>8/20 transformation p+ [1]</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/20 transformation p+ [2]</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/20 transformation p+ [3]</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/20 transformation p- [1]</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/20 transformation p- [2]</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/20 transformation p- [3]</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/18 parts p+</td><td>VF+VR</td></tr> | ||
+ | <tr><td>8/18 parts p-</td><td>VF+VR</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Steps)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr> | ||
+ | <tr><td>pre</td><td>94℃</td><td>2min</td><td>1</td></tr> | ||
+ | <tr><td>de</td><td>94℃</td><td>30sec</td><td>30</td></tr> | ||
+ | <tr><td>an</td><td>55℃</td><td>30sec</td><td>30</td></tr> | ||
+ | <tr><td>ex</td><td>68℃</td><td>1min</td><td>30</td></tr> | ||
+ | <tr><td>F.elong</td><td>4℃</td><td>7min</td><td>1</td></tr> | ||
+ | <tr><td>F.hold</td><td>4℃</td><td>-</td><td>1</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>Liquid Culture</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>strain</td><td>Medium/ml</td></tr> | ||
+ | <tr><td>8/20 transformation RBS</td><td>PG(AMP) /6</td></tr> | ||
+ | <tr><td>8/20 dilution INP7</td><td>PG(CP) /6</td></tr> | ||
+ | <tr><td>8/17 transformation 3c5, RFP</td><td>PG(CP) /6</td></tr> | ||
+ | <tr><td>8/20 transformation p+ [1]</td><td>PG(AMP) /6</td></tr> | ||
+ | <tr><td>8/20 transformation p- [1]</td><td>PG(AMP) /6</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0821" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/21</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder /1.5</td><td></td></tr> | ||
+ | <tr><td>2</td><td>8/21 cloning PCR scfv[1] /2</td><td></td></tr> | ||
+ | <tr><td>3</td><td>8/21 cloning PCR scfv[2] /2</td><td></td></tr> | ||
+ | <tr><td>4</td><td>nega /2</td><td></td></tr> | ||
+ | <tr><td>5</td><td>8/21 colony PCR p+ [1] /2</td><td></td></tr> | ||
+ | <tr><td>6</td><td>8/21 colony PCR p+ [2] /2</td><td></td></tr> | ||
+ | <tr><td>7</td><td>8/21 colony PCR p+ [3] /2</td><td></td></tr> | ||
+ | <tr><td>8</td><td>8/21 colony PCR p- [1] /2</td><td></td></tr> | ||
+ | <tr><td>9</td><td>8/21 colony PCR p- [2] /2</td><td></td></tr> | ||
+ | <tr><td>10</td><td>8/21 colony PCR p- [3] /2</td><td></td></tr> | ||
+ | <tr><td>11</td><td>8/21 colony PCR parts p+ /2</td><td></td></tr> | ||
+ | <tr><td>12</td><td>8/21 colony PCR parts p- /2</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/9/9d/T--Kyoto--8_21_No34_Electrophoresis_Kaneko_05_20_05_13_01.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img35]<br>2, 3, 4 cloning PCR failed.<br>1 forgot to put ladder<br>5, 7, 8, 9 strong band<br>6 weak<br>10 failed<br>P+[1] and p-[1] -> liquid culture</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0824" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/24</h3></span> | ||
+ | <span class="keln_exp"><h4>Ligation</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>sample/µl</th><th>MilliQ (µl)</th><th>Buffer /µl</th><th>Ligase(µl)</th><th>Total(µl)</th></tr> | ||
+ | <tr><td>8/19 mutation PCR scfv /5</td><td>3.5</td><td>1</td><td>0.5</td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0824" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/24</h3></span> | ||
+ | <span class="keln_exp"><h4>Liquid Culture</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Name</th><th>medium</th></tr> | ||
+ | <tr><td>8/20 transformation m.scfv colonyA /6</td><td>PG(AMP)</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0824" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/24</h3></span> | ||
+ | <span class="keln_exp"><h4>Miniprep</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>8/20 Liquid culture RBS</td><td>124.5</td><td>1.65</td><td>1.02</td></tr> | ||
+ | <tr><td>8/20 Liquid culture INP</td><td>147.8</td><td>1.66</td><td>0.98</td></tr> | ||
+ | <tr><td>8/20 Liquid culture 3c5.RFP</td><td>234.8</td><td>1.79</td><td>1.62</td></tr> | ||
+ | <tr><td>8/20 Liquid culture P+[1]</td><td>40.3</td><td>1.78</td><td>1.60</td></tr> | ||
+ | <tr><td>8/20 Liquid culture P-[1]</td><td>56.7</td><td>1.80</td><td>2.05</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0825" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/25</h3></span> | ||
+ | <span class="keln_exp"><h4>Miniprep</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino, Notsu, Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>8/24 LIquid Culture m.scfv colonyA</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | <tr><td>8/24 LIquid Culture m.scfv colonyB</td><td>-</td><td>-</td><td>-</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0825" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/25</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher"></span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder /1.5</td><td></td></tr> | ||
+ | <tr><td>2</td><td>8/24 miniprep p+(J61002) /2</td><td></td></tr> | ||
+ | <tr><td>3</td><td>8/24 miniprep p-(J61002) /2</td><td></td></tr> | ||
+ | <tr><td>4</td><td>8/24 miniprep RFP (3c5) /2</td><td></td></tr> | ||
+ | <tr><td>5</td><td>8/24 miniprep INP (1c3) /2</td><td></td></tr> | ||
+ | <tr><td>6</td><td>8/24 miniprep RBS (1A2) /2</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/f/fd/T--Kyoto--8_25_No38_Electrophoresis_Kaneko_05_20_05_22_35.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img38]</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0825" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/25</h3></span> | ||
+ | <span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span> | ||
+ | <span class="keln_researcher">Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffer/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td></td><td>p+/24.8</td><td></td><td></td><td>1</td><td>1</td><td>10xH /4</td><td></td><td>9.2</td><td>40</td></tr> | ||
+ | <tr><td></td><td>IINP /6.8</td><td></td><td>1</td><td></td><td>1</td><td>10xM /4</td><td></td><td>27.2</td><td>40</td></tr> | ||
+ | <tr><td></td><td>p- /17.6</td><td></td><td></td><td>1</td><td>1</td><td>10xH /4</td><td></td><td>16.4</td><td>40</td></tr> | ||
+ | <tr><td></td><td>RBS /8.0</td><td></td><td></td><td>1</td><td>1</td><td>10xH /4</td><td></td><td>26</td><td>40</td></tr> | ||
+ | <tr><td></td><td>RFP /4.3</td><td>1</td><td></td><td></td><td>1</td><td>10xH /4</td><td></td><td>29.7</td><td>40</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0825" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/25</h3></span> | ||
+ | <span class="keln_exp"><h4>Gel Extraction</h4></span> | ||
+ | <span class="keln_researcher">Uchino, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder </td><td>6</td></tr> | ||
+ | <tr><td>2, 3</td><td>8/25 digestion p+</td><td>24 each</td></tr> | ||
+ | <tr><td>4, 5</td><td>8/25 digestion p- </td><td>24 each</td></tr> | ||
+ | <tr><td>6, 7</td><td>8/25 digestion RFP </td><td>24 each</td></tr> | ||
+ | <tr><td>8, 9</td><td>8/25 digestion INP </td><td>24 each</td></tr> | ||
+ | <tr><td>10, 11</td><td>8/25 digestion RBS </td><td>24 each</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/7/77/T--Kyoto--8_25_No40_Gel_Extraction_Kaneko_05_20_05_28_41.JPG"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img40]</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0825" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/25</h3></span> | ||
+ | <span class="keln_exp"><h4>Actvation check of Xba and Pst</h4></span> | ||
+ | <span class="keln_researcher">Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>INP(µl)</th><th>Xba(µl)</th><th>Pst(µl)</th><th>10xM(µl)</th><th>BSA(µl)</th><th>MilliQ(µl)</th><th>Total(µl)</th></tr> | ||
+ | <tr><td>0.68</td><td>0.1</td><td>0.1</td><td>1</td><td>0.2</td><td>7.92</td><td>10</td></tr> | ||
+ | <tr><td>0.68</td><td>0.1</td><td>-</td><td>1</td><td>0.2</td><td>8.02</td><td>10</td></tr> | ||
+ | <tr><td>0.68</td><td>-</td><td>0.1</td><td>1</td><td>0.2</td><td>8.02</td><td>10</td></tr> | ||
+ | <tr><td>0.68</td><td>-</td><td>-</td><td>1</td><td>0.2</td><td>8.12</td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0825" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/25</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder /3</td><td></td></tr> | ||
+ | <tr><td>2</td><td>[1] (inp xp cut) /10</td><td></td></tr> | ||
+ | <tr><td>3</td><td>[2] (inp x cut) /10</td><td></td></tr> | ||
+ | <tr><td>4</td><td>[3] (inp p cut) /10</td><td></td></tr> | ||
+ | <tr><td>5</td><td>[4] (inp no cut) /10</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/4/46/T--Kyoto--8_25_No41_2_Electrophoresis_Kaneko_05_20_05_34_47.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img42]</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0826" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/26</h3></span> | ||
+ | <span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span> | ||
+ | <span class="keln_researcher">Uchino, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffer/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td></td><td>8/24 miniprep INP 1c3 /0.68</td><td>-</td><td>1.0</td><td></td><td></td><td></td><td>0.2</td><td>7.12</td><td>10</td></tr> | ||
+ | <tr><td></td><td>8/15 miniprep RFP psb1c3 /1.3</td><td>-</td><td>1.0</td><td></td><td></td><td></td><td>0.2</td><td>6.5</td><td>10</td></tr> | ||
+ | <tr><td></td><td>8/24 miniprep INP 1c3 /0.68</td><td>0.1</td><td>1.0</td><td></td><td></td><td></td><td>0.2</td><td>7.02</td><td>10</td></tr> | ||
+ | <tr><td></td><td>8/15 miniprep RFP psb1c3 /1.3</td><td>0.1</td><td>1.0</td><td></td><td></td><td></td><td>0.2</td><td>6.4</td><td>10</td></tr> | ||
+ | <tr><td></td><td>8/24 miniprep INP 1c3/ 0.68</td><td>0.1</td><td>-</td><td></td><td></td><td></td><td>0.2</td><td>8.02</td><td>10</td></tr> | ||
+ | <tr><td></td><td>8/15 miniprep RFP psb1c3 /1.3</td><td>0.1</td><td>-</td><td></td><td></td><td></td><td>0.2</td><td>7.4</td><td>10</td></tr> | ||
+ | <tr><td></td><td>8/24 miniprep INP 1c3 /0.68</td><td>-</td><td>-</td><td></td><td></td><td></td><td>0.2</td><td>8.12</td><td>10</td></tr> | ||
+ | <tr><td></td><td>8/15 miniprep RFP psb1c3 /1.3</td><td>-</td><td>-</td><td></td><td></td><td></td><td>0.2</td><td>7.5</td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0826" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/26</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Target)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Templates/(µl)</th><th>Primer1/(µl)</th><th>Primer2/(µl)</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Any Other/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>scfv from MK</td><td>c.scfv fw/0.75</td><td>c.scfv rv/0.75</td><td>2x KAPA Hifi /12.5</td><td>11</td><td></td><td>25</td></tr> | ||
+ | <tr><td>none</td><td>c.scfv fw/0.75</td><td>c.scfv rv/0.75</td><td>2x KAPA Hifi /5</td><td>4.4</td><td></td><td>10</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0826" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/26</h3></span> | ||
+ | <span class="keln_exp"><h4>Activation Check of Xba</h4></span> | ||
+ | <span class="keln_researcher">Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder/2</td><td></td></tr> | ||
+ | <tr><td>2</td><td>[8] RFP/10</td><td></td></tr> | ||
+ | <tr><td>3</td><td>[6] RFP EcoRI/10</td><td></td></tr> | ||
+ | <tr><td>4</td><td>[2] RFP XbaI/10</td><td></td></tr> | ||
+ | <tr><td>5</td><td>[4] RFP EcoRI, XbaI /10</td><td></td></tr> | ||
+ | <tr><td>6</td><td>[7] INP /10</td><td></td></tr> | ||
+ | <tr><td>7</td><td>[5] INP EcoRI /10</td><td></td></tr> | ||
+ | <tr><td>8</td><td>[1] INP XbaI /10</td><td></td></tr> | ||
+ | <tr><td>9</td><td>[3] INP EcoRI, XbaI/10</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/1/17/T--Kyoto--8_26_No45_Electrophoresis_Kaneko_05_20_05_42_54.jpg"> | ||
+ | </div> | ||
+ | <p class="keln_note">[img45-1]<br>[img45-2]</p> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0827" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/27</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>2</td><td>1kb ladder</td><td>2</td></tr> | ||
+ | <tr><td>3</td><td>8/25 PCR scfv</td><td>5</td></tr> | ||
+ | <tr><td>4</td><td>8/25 PCR none</td><td>5</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/f/fc/T--Kyoto--8_27_No46_Electrophoresis_Iguchi_10_17_06_08_50.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0827" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/27</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Target)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Templates/(µl)</th><th>Primer1/(µl)</th><th>Primer2/(µl)</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Any Other/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>s.BAN</td><td>BAN.Fw/ 0.75</td><td>BAN.Rv/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr> | ||
+ | <tr><td>s.BAN</td><td>BAN.Fw/ 0.75</td><td>BAN.Rv/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr> | ||
+ | <tr><td>s.BAN</td><td>BAN.Fw/ 0.75</td><td>BAN.Histag/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr> | ||
+ | <tr><td>scfv</td><td>scfv.Fw/ 0.75</td><td>scfv.Rv/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr> | ||
+ | <tr><td>8/24 miniprep INP</td><td>INP.Fw/ 0.75</td><td>INP.Rv/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr> | ||
+ | <tr><td>8/24 miniprep INP</td><td>INP.Fw/ 0.75</td><td>INP.Rv.Histag/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0827" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>8/27</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Steps)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr> | ||
+ | <tr><td>Predenature</td><td>95</td><td>3min</td><td>1</td></tr> | ||
+ | <tr><td>Denature</td><td>98</td><td>20sec</td><td>25</td></tr> | ||
+ | <tr><td>Annealing</td><td>65</td><td>15sec</td><td>25</td></tr> | ||
+ | <tr><td>Extension</td><td>72</td><td>30sec</td><td>25</td></tr> | ||
+ | <tr><td>Final Elogation</td><td>72</td><td>5min</td><td>1</td></tr> | ||
+ | <tr><td>Final Holding</td><td>4</td><td>-</td><td>1</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Kaneko --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0908" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/8</h3></span> | ||
+ | <span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span> | ||
+ | <span class="keln_researcher">Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffer/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td></td><td>[1] 8/15 miniprep 1c3 RFP /14</td><td>0.5</td><td></td><td>0.5</td><td>-</td><td>10xH /3</td><td></td><td>12</td><td>30</td></tr> | ||
+ | <tr><td></td><td>[2] 8/24 miniprep 3c5 RFP /8.5</td><td>0.5</td><td></td><td>-</td><td>0.5</td><td>10xH /3</td><td></td><td>17.5</td><td>30</td></tr> | ||
+ | <tr><td></td><td>[3] 8/24 miniprep 3c5 RFP /8.5</td><td>0.5</td><td></td><td>0.5</td><td>-</td><td>10xH /3</td><td></td><td>17.5</td><td>30</td></tr> | ||
+ | <tr><td></td><td>[4] 8/24 miniprep BBa_J61002 p- /24</td><td>0.5</td><td></td><td>-</td><td>0.5</td><td>10xH /3</td><td></td><td>2</td><td>30</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/4/4c/T--Kyoto--9_8_No50_Restriction_Enzyme_Digestion_Kaneko_05_20_05_48_28.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto,Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0909" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/9</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr> | ||
+ | <tr><td>1</td><td>100bp ladder 9µL</td></tr> | ||
+ | <tr><td>2</td><td>8/24 miniprep p- EPcut 30µL</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto,Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0909" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/9</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Sukegawa, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr> | ||
+ | <tr><td>1</td><td>1kbp ladder 9µL</td></tr> | ||
+ | <tr><td>2</td><td>8/15 miniprep 1C3RFP EScut 30µL</td></tr> | ||
+ | <tr><td>3</td><td>8/24 miniprep 3C5RFP EPcut 30µL</td></tr> | ||
+ | <tr><td>4</td><td>8/24 miniprep 3C5RFP EScut 30µL</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0914" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/14</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Target)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Templates/(µl)</th><th>Primer1/(µl)</th><th>Primer2/(µl)</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Any Other/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>8/24 miniprep INP</td><td>INPfw/0.75</td><td>INPRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr> | ||
+ | <tr><td>8/24 miniprep INP</td><td>INPfw/0.75</td><td>INPHisRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr> | ||
+ | <tr><td>BAN</td><td>BANFw/0/75</td><td>BANRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr> | ||
+ | <tr><td>BAN</td><td>BANFw/0/75</td><td>BANHisRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr> | ||
+ | <tr><td>BAN </td><td>BANFw/0/75</td><td>RBSRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr> | ||
+ | <tr><td>scFv fromMk</td><td>scFvFw/0/75</td><td>scFvRv/0/75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr> | ||
+ | <tr><td>scFv fromMk</td><td>scFvHisFw/0.75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0914" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/14</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Steps)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr> | ||
+ | <tr><td>1</td><td>95</td><td>3min</td><td>1</td></tr> | ||
+ | <tr><td>2</td><td>98</td><td>70sec</td><td>25</td></tr> | ||
+ | <tr><td>3</td><td>68</td><td>15sec</td><td>25</td></tr> | ||
+ | <tr><td>4</td><td>72</td><td>30sec</td><td>25</td></tr> | ||
+ | <tr><td>5</td><td>72</td><td>5min</td><td>1</td></tr> | ||
+ | <tr><td>6</td><td>10</td><td>-</td><td>1</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------><!-- Table Generated by KELN Author: Yamamoto,Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0914" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/14</h3></span> | ||
+ | <span class="keln_exp"><h4>Gel Extraction</h4></span> | ||
+ | <span class="keln_researcher">Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr> | ||
+ | <tr><td>2</td><td>ladder/6</td></tr> | ||
+ | <tr><td>4</td><td>9/14 PCR1/10</td></tr> | ||
+ | <tr><td>6</td><td>9/14 PCR2/10</td></tr> | ||
+ | <tr><td>8</td><td>9/14 PCR3/10</td></tr> | ||
+ | <tr><td>10</td><td>9/14 PCR4/10</td></tr> | ||
+ | <tr><td>12</td><td>9/14PCR5/10</td></tr> | ||
+ | <tr><td>14</td><td>9/14 PCR6/10</td></tr> | ||
+ | <tr><td>16</td><td>9/14 PCR7/10</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/4/4b/T--Kyoto--9_14_No53_Electrophoresis_Yamamoto_08_23_11_27_01.1.JPG"><img src="https://static.igem.org/mediawiki/2016/7/77/T--Kyoto--9_14_No53_Electrophoresis_Yamamoto_08_23_11_27_01.2.JPG"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0914" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/14</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Target)</h4></span> | ||
+ | <span class="keln_researcher">Li</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Templates/(µl)</th><th>Primer1/(µl)</th><th>Primer2/(µl)</th><th>Buffer/(µl)</th><th>MilliQ/(µl)</th><th>Any Other/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>3sBAN/0.15+6scFvfromMK/0.15</td><td>BANFw/0/75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi/12.5</td><td></td><td></td><td>25</td></tr> | ||
+ | <tr><td>4sBAN/0.15+7scFvfromMK/0.15</td><td>BANFw/0/75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi/12.5</td><td></td><td></td><td>25</td></tr> | ||
+ | <tr><td>1INP8/24miniprep/0.15+5sBAN0.15+scFvfromMK/0.15</td><td>BANFw/0/75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi/12.5</td><td></td><td></td><td>25</td></tr> | ||
+ | <tr><td>2INP8/24miniprep/0.15</td><td>BANFw/0/75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi/12.5</td><td></td><td></td><td>25</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto,Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0914" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/15</h3></span> | ||
+ | <span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffer/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>3sBAN+6scFvfromMKPCRproduct</td><td>34</td><td>1</td><td></td><td>1</td><td></td><td>4</td><td></td><td></td><td>40</td></tr> | ||
+ | <tr><td>4sBAN+7scFvfromMK PCRproduct</td><td>34</td><td>1</td><td></td><td>1</td><td></td><td>4</td><td></td><td></td><td>40</td></tr> | ||
+ | <tr><td>1INP8/24miniprep+5sBAN+6scFvfromMKPCRproduct</td><td>16</td><td>1</td><td></td><td>1</td><td></td><td>2</td><td></td><td></td><td>20</td></tr> | ||
+ | <tr><td>2INP8/24miniprep+5sBAN+7scFvfromMkPCRproduct</td><td>34</td><td>1</td><td></td><td>1</td><td></td><td>4</td><td></td><td></td><td>40</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0915" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/15</h3></span> | ||
+ | <span class="keln_exp"><h4>Gel Extraction</h4></span> | ||
+ | <span class="keln_researcher">Li, Uchino</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td></td></tr> | ||
+ | <tr><td>2</td><td>3sBAN+6scFvfromMkPCRproductEScut</td><td>20</td></tr> | ||
+ | <tr><td>3</td><td>3sBAN+6scFvfromMkPCRproductEScut</td><td>20</td></tr> | ||
+ | <tr><td>4</td><td>4sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr> | ||
+ | <tr><td>5</td><td>4sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr> | ||
+ | <tr><td>6</td><td>1INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr> | ||
+ | <tr><td>7</td><td>2INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr> | ||
+ | <tr><td>8</td><td>2INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr> | ||
+ | <tr><td>9</td><td>RFP3C5PCRproduct</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/a/a2/T--Kyoto--9_15_No56_Gel_Extraction_Yamamoto_08_23_11_46_18%2C1.jpg"><img src="https://static.igem.org/mediawiki/2016/5/52/T--Kyoto--9_15_No56_Gel_Extraction_Yamamoto_08_23_11_46_18%2C2.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0916" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/16</h3></span> | ||
+ | <span class="keln_exp"><h4>Colony PCR (2Column)</h4></span> | ||
+ | <span class="keln_researcher">Uchino, Michimori</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Name I</th><th>Name II</th></tr> | ||
+ | <tr><td>9/15 transformation BANscFv 3C5 colony1~16</td><td>VF+VR</td></tr> | ||
+ | <tr><td>9/15 transformation INPscFv 3C5 colony1~16</td><td>VF+VR</td></tr> | ||
+ | <tr><td>9/15 transformation BANHisscFv 3C5 colony1~16</td><td>VF+VR</td></tr> | ||
+ | <tr><td>9/15 transformation INPHisscFv 3C5 colony1~16</td><td>VF+VR</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0916" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/16</h3></span> | ||
+ | <span class="keln_exp"><h4>PCR (Steps)</h4></span> | ||
+ | <span class="keln_researcher">Uchino, Michimori</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr> | ||
+ | <tr><td>1</td><td>94</td><td>2</td><td>1</td></tr> | ||
+ | <tr><td>2</td><td>94</td><td>0.5</td><td>25</td></tr> | ||
+ | <tr><td>3</td><td>55</td><td>0.5</td><td>25</td></tr> | ||
+ | <tr><td>4</td><td>68</td><td>1</td><td>25</td></tr> | ||
+ | <tr><td>5</td><td>4</td><td>7</td><td>1</td></tr> | ||
+ | <tr><td>6</td><td>4</td><td>-</td><td>1</td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0916" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/16</h3></span> | ||
+ | <span class="keln_exp"><h4>Gel Extraction</h4></span> | ||
+ | <span class="keln_researcher">Li, Kaneko, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>5</td></tr> | ||
+ | <tr><td>2</td><td>BANscFv3C5 colony 9</td><td>10</td></tr> | ||
+ | <tr><td>3</td><td>BANscFv3C5 colony 10</td><td>10</td></tr> | ||
+ | <tr><td>4</td><td>BANscFv3C5 colony 11</td><td>10</td></tr> | ||
+ | <tr><td>5</td><td>BANscFv3C5 colony 12</td><td>10</td></tr> | ||
+ | <tr><td>6</td><td>BANscFv3C5 colony 13</td><td>10</td></tr> | ||
+ | <tr><td>7</td><td>BANscFv3C5 colony 14</td><td>10</td></tr> | ||
+ | <tr><td>8</td><td>BANscFv3C5 colony 15</td><td>10</td></tr> | ||
+ | <tr><td>9</td><td>BANscFv3C5 colony 16</td><td>10</td></tr> | ||
+ | <tr><td>10</td><td>BANHisscFv3C5 colony 9</td><td>10</td></tr> | ||
+ | <tr><td>11</td><td>BANHisscFv3C5 colony 10</td><td>10</td></tr> | ||
+ | <tr><td>12</td><td>BANHisscFv3C5 colony 11</td><td>10</td></tr> | ||
+ | <tr><td>13</td><td>BANHisscFv3C5 colony 12</td><td>10</td></tr> | ||
+ | <tr><td>14</td><td>BANHisscFv3C5 colony 13</td><td>10</td></tr> | ||
+ | <tr><td>15</td><td>BANHisscFv3C5 colony 14</td><td>10</td></tr> | ||
+ | <tr><td>16</td><td>BANHisscFv3C5 colony 15</td><td>10</td></tr> | ||
+ | <tr><td>17</td><td>BANHisscFv3C5 colony 16</td><td>10</td></tr> | ||
+ | <tr><td>18</td><td>BANscFv3C5 colony 1</td><td>10</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/d/d3/T--Kyoto--9_16_No59_Gel_Extraction_Yamamoto_08_23_11_57_19.1.JPG"><img src="https://static.igem.org/mediawiki/2016/3/34/T--Kyoto--9_16_No59_Gel_Extraction_Yamamoto_08_23_11_57_19.2.JPG"><img src="https://static.igem.org/mediawiki/2016/a/aa/T--Kyoto--9_16_No59_Gel_Extraction_Yamamoto_08_23_11_57_19.3.JPG"><img src="https://static.igem.org/mediawiki/2016/6/67/T--Kyoto--9_16_No59_Gel_Extraction_Yamamoto_08_23_11_57_19.4.JPG"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0916" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/16</h3></span> | ||
+ | <span class="keln_exp"><h4>Gel Extraction</h4></span> | ||
+ | <span class="keln_researcher">Li, Kaneko, Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(µl)</th></tr> | ||
+ | <tr><td>1</td><td>1kb ladder</td><td>5</td></tr> | ||
+ | <tr><td>2</td><td>INPscFv3C5 colony 9</td><td>10</td></tr> | ||
+ | <tr><td>3</td><td>INPscFv3C5 colony 10</td><td>10</td></tr> | ||
+ | <tr><td>4</td><td>INPscFv3C5 colony 11</td><td>10</td></tr> | ||
+ | <tr><td>5</td><td>INPscFv3C5 colony 12</td><td>10</td></tr> | ||
+ | <tr><td>6</td><td>INPscFv3C5 colony 13</td><td>10</td></tr> | ||
+ | <tr><td>7</td><td>INPscFv3C5 colony 14</td><td>10</td></tr> | ||
+ | <tr><td>8</td><td>INPscFv3C5 colony 15</td><td>10</td></tr> | ||
+ | <tr><td>9</td><td>INPscFv3C5 colony 16</td><td>10</td></tr> | ||
+ | <tr><td>10</td><td>INPHisscFv3C5 colony 9</td><td>10</td></tr> | ||
+ | <tr><td>11</td><td>INPHisscFv3C5 colony 10</td><td>10</td></tr> | ||
+ | <tr><td>12</td><td>INPHisscFv3C5 colony 11</td><td>10</td></tr> | ||
+ | <tr><td>13</td><td>INPHisscFv3C5 colony 12</td><td>10</td></tr> | ||
+ | <tr><td>14</td><td>INPHisscFv3C5 colony 13</td><td>10</td></tr> | ||
+ | <tr><td>15</td><td>INPHisscFv3C5 colony 14</td><td>10</td></tr> | ||
+ | <tr><td>16</td><td>INPHisscFv3C5 colony 15</td><td>10</td></tr> | ||
+ | <tr><td>17</td><td>INPHisscFv3C5 colony 16</td><td>10</td></tr> | ||
+ | <tr><td>18</td><td>BANscFv3C5 colony 1</td><td>10</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/3/3d/T--Kyoto--9_16_No60_Gel_Extraction_Yamamoto_08_23_11_59_27%2C1.jpg"><img src="https://static.igem.org/mediawiki/2016/8/88/T--Kyoto--9_16_No60_Gel_Extraction_Yamamoto_08_23_11_59_27%2C2.jpg"><img src=""><img src="https://static.igem.org/mediawiki/2016/4/42/T--Kyoto--9_16_No60_Gel_Extraction_Yamamoto_08_23_11_59_27%2C3.jpg"><img src="https://static.igem.org/mediawiki/2016/6/69/T--Kyoto--9_16_No60_Gel_Extraction_Yamamoto_08_23_11_59_27%2C4.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto,Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0916" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/17</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Michimori, Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr> | ||
+ | <tr><td>1</td><td>buffer/5</td></tr> | ||
+ | <tr><td>2</td><td>1kb ladder/5</td></tr> | ||
+ | <tr><td>3</td><td>BAN 9 P/4.5</td></tr> | ||
+ | <tr><td>4</td><td>BAN 9 N/4.5</td></tr> | ||
+ | <tr><td>5</td><td>BAN14 P/4.5</td></tr> | ||
+ | <tr><td>6</td><td>BAN14 N/4.5</td></tr> | ||
+ | <tr><td>7</td><td>BANHis14 P/4.5</td></tr> | ||
+ | <tr><td>8</td><td>BANHis14/4.5</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/9/98/T--Kyoto--9_17_No62_Electrophoresis_Yamamoto_08_23_12_42_58.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0917" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/17</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>sample/(µl)</th><th>Length(bp)</th></tr> | ||
+ | <tr><td>1</td><td>1kbp ladder</td><td></td></tr> | ||
+ | <tr><td>2</td><td>none</td><td></td></tr> | ||
+ | <tr><td>3</td><td>BANHis16 p</td><td></td></tr> | ||
+ | <tr><td>4</td><td>BANHis16 n</td><td></td></tr> | ||
+ | <tr><td>5</td><td>INP 12 p</td><td></td></tr> | ||
+ | <tr><td>6</td><td>INP 14 p</td><td></td></tr> | ||
+ | <tr><td>7</td><td>INP 12 n</td><td></td></tr> | ||
+ | <tr><td>8</td><td>INP 14 n</td><td></td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/9/9b/T--Kyoto--9_17_No63_Electrophoresis_Iguchi_10_17_06_39_35.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto,Iguchi --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0917" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/17</h3></span> | ||
+ | <span class="keln_exp"><h4>Electrophoresis</h4></span> | ||
+ | <span class="keln_researcher">Kaneko</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr> | ||
+ | <tr><td>1</td><td>-</td></tr> | ||
+ | <tr><td>2</td><td>-</td></tr> | ||
+ | <tr><td>3</td><td>1kbladder/5</td></tr> | ||
+ | <tr><td>4</td><td>INPHis9 P/4.5</td></tr> | ||
+ | <tr><td>5</td><td>INPHis9N/4.5</td></tr> | ||
+ | <tr><td>6</td><td>INPHis12P/4.5</td></tr> | ||
+ | <tr><td>7</td><td>INPHis12N/4.5</td></tr> | ||
+ | <tr><td>8</td><td>INP14 N/4.5</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/b/b8/T--Kyoto--9_17_No64_Electrophoresis_Yamamoto_08_23_01_05_58.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0917" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/17</h3></span> | ||
+ | <span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span> | ||
+ | <span class="keln_researcher">Uchino, Michimori</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>Sample</th><th>DNA/(µl)</th><th>EcoR1/(µl)</th><th>Xba1/(µl)</th><th>Spe1/(µl)</th><th>Pst1/(µl)</th><th>Buffer/(µl)</th><th>BSA/(µl)</th><th>MilliQ/(µl)</th><th>Total/(µl)</th></tr> | ||
+ | <tr><td>BAN9 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>BAN9 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>BAN14 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>BAN14 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>BANHis14 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>BANHis 14 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>BANHis 16 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>BANHis16 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>INP12 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>INP12 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>INP14 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>INP 14 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>INP 9 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>INP9 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr> | ||
+ | <tr><td>INPHis12 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr> | ||
+ | <tr><td>INPHis12 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr> | ||
+ | </table> | ||
+ | <img src="https://static.igem.org/mediawiki/2016/8/8a/T--Kyoto--9_17_No65_Restriction_Enzyme_Digestion_Yamamoto_08_23_01_13_52.jpg"> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
+ | <!-- Table Generated by KELN Author: Yamamoto --> | ||
+ | <div class="keln_container"> | ||
+ | <a name="0917" class = "kyoto-jump"></a> | ||
+ | <span class="keln_date"><h3>9/17</h3></span> | ||
+ | <span class="keln_exp"><h4>Miniprep</h4></span> | ||
+ | <span class="keln_researcher">Notsu</span> | ||
+ | <table class="keln_table"> | ||
+ | <tr><th>DNA</th><th>Concentration/(µg/ml)</th><th>260/280</th><th>260/230</th></tr> | ||
+ | <tr><td>9/16 liquid culture BANscFv12</td><td></td><td></td><td></td></tr> | ||
+ | <tr><td>9/16 liquid culture BANscFv14</td><td></td><td></td><td></td></tr> | ||
+ | <tr><td>9/16 liquid culture BANHisscFv12</td><td></td><td></td><td></td></tr> | ||
+ | <tr><td>9/16 liquid culture BANHisscFv14</td><td></td><td></td><td></td></tr> | ||
+ | <tr><td>9/16 liquid culture INPHisscFv12</td><td></td><td></td><td></td></tr> | ||
+ | <tr><td>9/16 liquid culture INPHisscFv14</td><td></td><td></td><td></td></tr> | ||
+ | <tr><td>9/16 liquid culture INPHisscFv10</td><td></td><td></td><td></td></tr> | ||
+ | <tr><td>9/16 liquid culture BANscFv</td><td></td><td></td><td></td></tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | <!------------ Table END ------------> | ||
</div> | </div> |
Latest revision as of 17:57, 19 October 2016
August | ||||||
---|---|---|---|---|---|---|
1 | ||||||
2 | 3 | 4 | 5 | 6 | 7 | 8 |
9 | 10 | 11 | 12 | 13 | 14 | 15 |
16 | 17 | 18 | 19 | 20 | 21 | 22 |
23 | 24 | 25 | 26 | 27 | 28 | 29 |
30 | 31 |
September | ||||||
---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | ||
6 | 7 | 8 | 9 | 10 | 11 | 12 |
13 | 14 | 15 | 16 | 17 | 18 | 19 |
20 | 21 | 22 | 23 | 24 | 25 | 26 |
27 | 28 | 29 | 30 | |||
8/14
Transformation
Li, Uchino, KanekoSample Name | Sample Volume (µl) | Competent Cells/(µl) | Medium |
---|---|---|---|
RFP 0.5ng/µl | 2 | DH5α /20 | LB(CP) |
RFP 5ng/µl | 2 | DH5α /20 | LB(CP) |
RFP 10ng/µl | 2 | DH5α /20 | LB(CP) |
RFP 20ng/µl | 2 | DH5α /20 | LB(CP) |
RFP 50ng/µl | 2 | DH5α /20 | LB(CP) |
8/14
Gel Extraction
Li, Uchino, KanekoLane | Restriction Enzyme Digestion Product | Volume/(µl) |
---|---|---|
1 | 10/1 PQ(3) | about 23.5 |
2 | 1kb ladder | 6 |
3 | 10/1 PQ(3) | about 23.5 |
4 | 10/1 PQ(3) | about 24 |
Total volume of samples of lane 1~3 was 71.5µl and it was divided into three.
8/14
Transformation
Li, Uchino, KanekoSample Name | Sample Volume | Competent Cells/(µl) | Medium |
---|---|---|---|
3C5 | 10µl | DH5α 20µl | LB(CP) |
P+ | 10µl | DH5α 20µl | LB(CP) |
P- | 10µl | DH5α 20µl | LB(CP) |
RBS | 10µl | DH5α 20µl | LB(CP) |
8/14
Liquid Culture
Li, Uchino, Iguchi, KanekoName | medium |
---|---|
8/13 transformation RFP 20ng/µl colony1 | LB(CP) |
8/13 transformation part RFP colony1 | LB(CP) |
8/13 transformation part RFP colony2 | LB(CP) |
8/13 transformation part RFP colony3 | LB(CP) |
8/13 transformation part RFP colony4 | LB(CP) |
8/13 transformation part RFP colony5 | LB(CP) |
8/13 transformation part RFP colony6 | LB(CP) |
8/13 transformation part RFP colony7 | LB(CP) |
8/13 transformation part RFP colony8 | LB(CP) |
8/13 transformation part RFP colony9 | LB(CP) |
8/13 transformation part RFP colony10 | LB(CP) |
8/13 transformation part RFP colony11 | LB(CP) |
8/15
Miniprep
Li, Uchino, Notsu, Kaneko, WatanabeDNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
RFP1 /2µl | 82.5 | 1.40 | 1.22 |
RFP2 /4µl | 142.5 | 1.69 | 2.05 |
RFP3 /4µl | 50 | 1.55 | 1.71 |
RFP4 /4µl | 57.5 | 1.64 | 1.88 |
RFP6 /4µl | 98.75 | 1.71 | 1.40 |
RFP(20) /4µl | 76.25 | 1.67 | 1.32 |
8/15
Electrophoresis
Notsu, KanekoLane | Restriction Enzyme Digestion Products |
---|---|
1 | 1kb ladder 3µl |
2 | RFP1 10µl |
3 | RFP2 10µl |
4 | RFP3 10µl |
5 | RFP4 10µl |
6 | RFP6 10µl |
7 | RFP(20) 10µl |
8 | PCR1 5µl |
9 | PCR2 5µl |
10 | PCR3 5µl |
11 | PCR4 5µl |
12 | PCR5 5 µl |
13 | 1kb ladder 3µl |
8/15
Restriction Enzyme Digestion
Uchino, Notsu, KanekoSample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffer/(µl) | BSA/(µl) | MilliQ/(µl) | Total/(µl) |
---|---|---|---|---|---|---|---|---|---|
8/15Miniprep PSB1C3-RFP1 | 24 | 1 | 0 | 0 | 1 | 5(H) | 0 | 19 | 50 |
8/15Miniprep PSB1C3-RFP2 | 14 | 1 | 0 | 0 | 1 | 5(H) | 0 | 29 | 50 |
8/15Miniprep PSB1C3-RFP3 | 40 | 1 | 0 | 0 | 1 | 5(H) | 0 | 3 | 50 |
8/15Miniprep PSB1C3-RFP4 | 35 | 1 | 0 | 0 | 1 | 5(H) | 0 | 8 | 50 |
8/15Miniprep PSB1C3-RFP6 | 20 | 1 | 0 | 0 | 1 | 5(H) | 0 | 23 | 50 |
8/15
colony PCR
Uchino, Notsu, Kaneko, Watanabecolony Primers |
---|
8/14 transformation pSB1C3-RFP1 VF+VR |
8/14 transformation pSB1C3-RFP2 VF+VR |
8/14 transformation pSB1C3-RFP3 VF+VR |
8/14 transformation pSB1C3-RFP4 VF+VR |
8/14 transformation pSB1C3-RFP1 VF+VR |
8/15
PCR (Steps)
Uchino, Notsu, Kaneko, WatanabeSteps | Temparature | Time | Cycle |
---|---|---|---|
Pre Denature | 94℃ | 2min | 1 |
Denature | 94℃ | 30sec | 30 |
Annealing | 55℃ | 30sec | 30 |
Extension | 68℃ | 1min | 30 |
Final elongation | 4℃ | 7min | 1 |
Final Holding | 4℃ | - | - |
8/16
Gel Extraction
Li, Iguchi, Notsu, Kaneko, WatanabeLane | Restriction Enzyme Digestion Product | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 10 |
2 | blank | |
3 | 8/15 digestion pSB1C3-RFP 1 | 55 |
4 | 8/15 digestion pSB1C3-RFP 2 | 55 |
5 | 8/15 digestion pSB1C3-RFP 3 | 36 |
6 | 8/15 digestion pSB1C3-RFP 4 | 36 |
7 | 8/15 digestion pSB1C3-RFP 6 | 36 |
8/16
Electrophoresis
Li, Iguchi, Notsu, Kaneko, WatanabeLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 8/16 Gel Extraction RFP1 /1 | |
2 | 8/16 Gel Extraction RFP2 /1 | |
3 | 8/16 Gel Extraction RFP3 /1 | |
4 | 8/16 Gel Extraction RFP4 /1 | |
5 | blank | |
6 | 8/16 pSB1C3-vector /1 | |
7 | 8/16 pSB1C3-vector /1 | |
8 | 1kladder |
8/16
Ligation
Li, Iguchi, Notsu, Kaneko, WatanabeVector DNA /(µl) | insert DNA /(µl) | ligase /(µl) | 10×buffer /(µl) | MilliQ /(µl) | Total /(µl) |
---|---|---|---|---|---|
pSB1C3 EPcut /1 | RFP /4 | 0.5 | 1 | 3 | 9.5 |
pSB1C3 EPcut /1 | RFP /2 | 0.5 | 1 | 5 | 9.5 |
pSB1C3 EPcut /1 | RFP /4 | 0.5 | 1 | 3 | 9.5 |
pSB1C3 EPcut /1 | RFP /4 | 0.5 | 1 | 3 | 9.5 |
pSB1C3 EPcut /1 | - | 0.5 | 1 | 7 | 9.5 |
8/17
Liquid Culture
LiName | medium |
---|---|
8/16 transformation pSB3C5 RFP1 | LB(CP) /6 |
8/16 transformation pSB3C5 RFP2 | LB(CP) /6 |
8/16 transformation pSB3C5 RFP1 | LB(CP) /6 |
8/17
Transformation
LiSample Name | Sample Volume (µl) | Competent Cells/(µl) | Medium |
---|---|---|---|
pSB1C3 P+ | 2 | DH5α /20 | LB |
pSB1C3 P- | 2 | DH5α /20 | LB |
pSB1C3 RBS | 2 | DH5α /20 | LB |
pSB3C5 RFP | 2 | DH5α /20 | LB |
8/16 ligation pSB1C3 RFP1 | 2 | DH5α | LB |
8/17
Electrophoresis
IguchiLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kbp ladder /3 | |
2 | blank | |
3 | pSB1C3-RFP(ligate)1 /2 | |
4 | pSB1C3-RFP(ligate)2 /2 | |
5 | pSB1C3-RFP(ligate)3 /2 | |
6 | pSB1C3-RFP(ligate)4 /3 | |
7 | Vector (Ctrl) /5 |
8/18
Liquid Culture
Li, Iguchi, NotsuName | medium |
---|---|
INP [1] BBa_K811005 | LB(CP) / 6ml |
INP [2] BBa_K811005 | LB(CP) / 6ml |
INP [3] BBa_K811005 | LB(CP) / 6ml |
scfv04 [1] BBa_K875004 | LB(CP) / 6ml |
scfv04 [2] BBa_K875004 | LB(CP) / 6ml |
scfv04 [3] BBa_K875004 | LB(CP) / 6ml |
scfv06 [1] BBa__K875006 | LB(CP) / 6ml |
scfv06 [2] BBa_K875006 | LB(CP) / 6ml |
scfv06 [3] BBa_K875006 | LB(CP) / 6ml |
8/18
Miniprep
Li, Iguchi, NotsuDNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/17 Liquid Culture 3C5 [1] / 5µl | 77 | 1.69 | 1.45 |
8/17 Liquid Culture 3C5 [2] / 2µl | 40 | 1.67 | 1.17 |
8/17 Liquid Culture 3C5 [3] / 2µl | 15 | 3.75 | 3.70 |
8/18
Electrophoresis
LiLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kb ladder /1 | - |
2 | [1] psb3c5(8/18 miniprep) /4.2 | 3807 |
3 | [2] psb3c5(8/18 miniprep) /4.2 | 3807 |
4 | [1'] psb3c5(8/18 miniprep) /4.2 | 3807 |
5 | [2'] psb3c5(8/18 miniprep) /4.2 | 3807 |
6 | [3'] psb3c5(8/18 miniprep) /4.2 | 3807 |
[img18]
8/18
Restriction Enzyme Digestion
Li, Iguchi, NotsuSample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffer/(µl) | BSA/(µl) | MilliQ/(µl) | Total/(µl) |
---|---|---|---|---|---|---|---|---|---|
psb3c5(8/18miniprep) [1'], [2'], [3'] mixed / 50 | 1.0 | 1.0 | 5.6 | 56.6 |
8/19
Transformation
Li, Iguchi, NotsuSample Name | Sample Volume (µl) | Competent Cells/(µl) | Medium |
---|---|---|---|
BBa_ J61002 p+ | 2 | DH5a /20 | LB(Amp) |
BBa_J61002 p- | 2 | DH5a /20 | LB(Amp) |
BBa_1A2 RBS | 2 | DH5a /20 | LB(Amp) |
Failed due to deactivation of Amp
8/19
MutationPCR
Templates /µl | Primer /µl | Primer STAR Max Premix /µl | MilliQ /µl | Total(µl) |
---|---|---|---|---|
scfv plasmid /0.1 | m.scfv FW /1, m.scfvRV/1 | 25 | 22.9 | 50 |
scfv plasmid (nega) /0.1 | 0 | 5 | 4.9 | 10 |
(nega) /0 | m.scfv FW/0.2, m.scfvRV/0.2 | 5 | 4.6 | 10 |
---30cycle---
98℃ 10''
55℃ 15''
72℃ 20''
----------------
4℃ holding
8/19
Electrophoresis
NotsuLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kb ladder/2 | - |
2 | scfv plasmid +primer(m.scfv FW, m.scfv RV) mutation PCR product /5 | 3600 |
3 | scfv plasmid mutation PCR product /5 | - |
4 | primer(m.scfv FW, m.scfv RV) mutation PCR product /5 | - |
5 | psb3c5 EPcut product /5 | 2600(backborn), 1200(inseert |
[img22]
8/19
Concentration
Li, NotsuSample | OD600 | Bacterial cells /ml |
---|---|---|
INP [1] K811005 | 0.643 | 5.14x10^8 |
scfv06 K875006 | 0.634 | 5.07x10^8 |
scfv04 K875004 | 0.618 | 4.94x10^8 |
1 OD 600 equals to 8x10^8 cells /ml
8/19
Miniprep
Li, NotsuDNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
scfv 04[1] K875004 /3µl | 56 | 1.63 | 1.45 |
scfv 04[2] K875004 /3µl | 56 | 1.63 | 1.45 |
scfv 04[3] K875004 /3µl | 56 | 1.63 | 1.45 |
scfv 06[1] K875006 /3µl | 56 | 1.63 | 1.45 |
scfv 06[2] K875006 /3µl | 56 | 1.63 | 1.45 |
scfv 06[3] K875006 /3µl | 56 | 1.63 | 1.45 |
INP [1] K811005 /3µl | 56 | 1.63 | 1.45 |
INP [2] K811005 /3µl | 56 | 1.63 | 1.45 |
INP [3] K811005 /3µl | 56 | 1.63 | 1.45 |
There was a problem with an instrument
8/20
Transformation
Li, UchinoSample Name | Sample Volume (µl) | Competent Cells/(µl) | Medium |
---|---|---|---|
8/19 mutation PCR scfv plasmid (nega) | 1 | DH5a/ 20 | LB(CP) |
8/19 mutation PCR:
1µl extraction of scfv plasmid (nega)/10µl was folded 300 times.
8/20
Transformation
Li, UchinoSample Name | Sample Volume (µl) | Competent Cells/(µl) | Medium |
---|---|---|---|
8/19 mutation PCR scfv plasmid | 1 [note:1] | DH5a/20 | LB(AMP) |
8/19 mutation PCR scfv plasmid (nega) | 1 [note:2] | DH5a/20 | LB(AMP) |
BBa_J61002 p+ | 1 | DH5a/20 | LB(AMP) |
BBa_J61002 p- | 1 | DH5a/20 | LB(AMP) |
BBa_1A2 RBS | 1 | DH5a/20 | LB(AMP) |
[note:1]
8/19 mutation PCR:
1µl extraction of scfv plasmid (nega)/50µl was folded 300 times.
[note:2]
8/19 mutation PCR:
1µl extraction of scfv plasmid (nega)/10µl was folded 300 times.
8/20
Electrophoresis
LiLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kb ladder /1.5 | |
2 | 9/19 miniprep scfv04 [1] | |
3 | 9/19 miniprep scfv04 [2] | |
4 | 9/19 miniprep scfv04 [3] | |
5 | 9/19 miniprep scfv06 [1] | |
6 | 9/19 miniprep scfv06 [2] | |
7 | 9/19 miniprep scfv06 [3] | |
8 | 9/19 miniprep INP [1] | |
9 | 9/19 miniprep INP [2] | |
10 | 9/19 miniprep INP [3] |
[img26]
8/21
Colony PCR
UchinoColony | Primers |
---|---|
8/20 transformation RBS | VF+VR |
8/20 transformation p+ | VF+VR |
8/20 transformation p- | VF+VR |
8/20 dilution INP | VF+VR |
8/21
PCR (Steps)
UchinoSteps | Temparature | Time | Cycle |
---|---|---|---|
Pre | 94℃ | 2min | 1 |
De | 94℃ | 30 sec | 30 |
An | 55℃ | 30 sec | 30 |
Ex | 68℃ | 1min | 30 |
Final E | 4℃ | 7min | 1 |
Final Hold | 4℃ | - | - |
Autoclaved distrilled water /23µl
2xQuick taq /25µl
10 pmol/µl primer (VF) /1µl
10 pmol/µl primer (VR) /1µl
Template DNA /0µl
Total 50µl
8/21
Electrophoresis
LiLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kb ladder /2 | |
2 | 8/21 colony PCR RBS /all | |
3 | 8/21 colony PCR p+ /all | |
4 | 8/21 colony PCR p- /all | |
5 | 8/21 colony PCR INP /all | |
6 | 8/21 colony PCR Nega /all |
[img29-1]
weak band except INP -> retry
colony PCR and Electrophoresis were conducted under the same condition.
[img29-2]
RBS and INP success.
P+ and P- failed -> retry.
8/21
PCR (Steps)
LiSteps | Temparature | Time | Cycle |
---|---|---|---|
Predenature | 95℃ | 3min | 1 |
Denature | 98℃ | 20sec | 25 |
Annealing | 70℃ | 15sec | 25 |
Extension | 72℃ | 30sec | 25 |
Final Elongation | 72℃ | 5min | 1 |
Final Holding | 4℃ | - | 1 |
8/21
PCR (Target)
LiTemplates/(µl) | Primer1/(µl) | Primer2/(µl) | Buffer/(µl) | MilliQ/(µl) | Any Other/(µl) | Total/(µl) |
---|---|---|---|---|---|---|
scfv 8/20 transformation | cscfv.f /0.75 | cscfv.r /0.75 | 2x KAPA Hifi /12.5 | 11 | 25 | |
- (nega) | cscfv.f /0.3 | cscfv.f /0.3 | 2x KAPA Hifi /5 | 4.4 | 10 |
8/21
Colony PCR
LiColony | Primers |
---|---|
8/20 transformation p+ [1] | VF+VR |
8/20 transformation p+ [2] | VF+VR |
8/20 transformation p+ [3] | VF+VR |
8/20 transformation p- [1] | VF+VR |
8/20 transformation p- [2] | VF+VR |
8/20 transformation p- [3] | VF+VR |
8/18 parts p+ | VF+VR |
8/18 parts p- | VF+VR |
8/21
PCR (Steps)
LiSteps | Temparature | Time | Cycle |
---|---|---|---|
pre | 94℃ | 2min | 1 |
de | 94℃ | 30sec | 30 |
an | 55℃ | 30sec | 30 |
ex | 68℃ | 1min | 30 |
F.elong | 4℃ | 7min | 1 |
F.hold | 4℃ | - | 1 |
8/21
Liquid Culture
LiName | medium |
---|---|
strain | Medium/ml |
8/20 transformation RBS | PG(AMP) /6 |
8/20 dilution INP7 | PG(CP) /6 |
8/17 transformation 3c5, RFP | PG(CP) /6 |
8/20 transformation p+ [1] | PG(AMP) /6 |
8/20 transformation p- [1] | PG(AMP) /6 |
8/21
Electrophoresis
LiLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kb ladder /1.5 | |
2 | 8/21 cloning PCR scfv[1] /2 | |
3 | 8/21 cloning PCR scfv[2] /2 | |
4 | nega /2 | |
5 | 8/21 colony PCR p+ [1] /2 | |
6 | 8/21 colony PCR p+ [2] /2 | |
7 | 8/21 colony PCR p+ [3] /2 | |
8 | 8/21 colony PCR p- [1] /2 | |
9 | 8/21 colony PCR p- [2] /2 | |
10 | 8/21 colony PCR p- [3] /2 | |
11 | 8/21 colony PCR parts p+ /2 | |
12 | 8/21 colony PCR parts p- /2 |
[img35]
2, 3, 4 cloning PCR failed.
1 forgot to put ladder
5, 7, 8, 9 strong band
6 weak
10 failed
P+[1] and p-[1] -> liquid culture
8/24
Ligation
Lisample/µl | MilliQ (µl) | Buffer /µl | Ligase(µl) | Total(µl) |
---|---|---|---|---|
8/19 mutation PCR scfv /5 | 3.5 | 1 | 0.5 | 10 |
8/24
Miniprep
LiDNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/20 Liquid culture RBS | 124.5 | 1.65 | 1.02 |
8/20 Liquid culture INP | 147.8 | 1.66 | 0.98 |
8/20 Liquid culture 3c5.RFP | 234.8 | 1.79 | 1.62 |
8/20 Liquid culture P+[1] | 40.3 | 1.78 | 1.60 |
8/20 Liquid culture P-[1] | 56.7 | 1.80 | 2.05 |
8/25
Miniprep
Li, Uchino, Notsu, KanekoDNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
8/24 LIquid Culture m.scfv colonyA | - | - | - |
8/24 LIquid Culture m.scfv colonyB | - | - | - |
8/25
Electrophoresis
Lane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kb ladder /1.5 | |
2 | 8/24 miniprep p+(J61002) /2 | |
3 | 8/24 miniprep p-(J61002) /2 | |
4 | 8/24 miniprep RFP (3c5) /2 | |
5 | 8/24 miniprep INP (1c3) /2 | |
6 | 8/24 miniprep RBS (1A2) /2 |
[img38]
8/25
Restriction Enzyme Digestion
UchinoSample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffer/(µl) | BSA/(µl) | MilliQ/(µl) | Total/(µl) |
---|---|---|---|---|---|---|---|---|---|
p+/24.8 | 1 | 1 | 10xH /4 | 9.2 | 40 | ||||
IINP /6.8 | 1 | 1 | 10xM /4 | 27.2 | 40 | ||||
p- /17.6 | 1 | 1 | 10xH /4 | 16.4 | 40 | ||||
RBS /8.0 | 1 | 1 | 10xH /4 | 26 | 40 | ||||
RFP /4.3 | 1 | 1 | 10xH /4 | 29.7 | 40 |
8/25
Gel Extraction
Uchino, NotsuLane | Restriction Enzyme Digestion Product | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 6 |
2, 3 | 8/25 digestion p+ | 24 each |
4, 5 | 8/25 digestion p- | 24 each |
6, 7 | 8/25 digestion RFP | 24 each |
8, 9 | 8/25 digestion INP | 24 each |
10, 11 | 8/25 digestion RBS | 24 each |
[img40]
8/25
Actvation check of Xba and Pst
UchinoINP(µl) | Xba(µl) | Pst(µl) | 10xM(µl) | BSA(µl) | MilliQ(µl) | Total(µl) |
---|---|---|---|---|---|---|
0.68 | 0.1 | 0.1 | 1 | 0.2 | 7.92 | 10 |
0.68 | 0.1 | - | 1 | 0.2 | 8.02 | 10 |
0.68 | - | 0.1 | 1 | 0.2 | 8.02 | 10 |
0.68 | - | - | 1 | 0.2 | 8.12 | 10 |
8/25
Electrophoresis
NotsuLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kb ladder /3 | |
2 | [1] (inp xp cut) /10 | |
3 | [2] (inp x cut) /10 | |
4 | [3] (inp p cut) /10 | |
5 | [4] (inp no cut) /10 |
[img42]
8/26
Restriction Enzyme Digestion
Uchino, NotsuSample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffer/(µl) | BSA/(µl) | MilliQ/(µl) | Total/(µl) |
---|---|---|---|---|---|---|---|---|---|
8/24 miniprep INP 1c3 /0.68 | - | 1.0 | 0.2 | 7.12 | 10 | ||||
8/15 miniprep RFP psb1c3 /1.3 | - | 1.0 | 0.2 | 6.5 | 10 | ||||
8/24 miniprep INP 1c3 /0.68 | 0.1 | 1.0 | 0.2 | 7.02 | 10 | ||||
8/15 miniprep RFP psb1c3 /1.3 | 0.1 | 1.0 | 0.2 | 6.4 | 10 | ||||
8/24 miniprep INP 1c3/ 0.68 | 0.1 | - | 0.2 | 8.02 | 10 | ||||
8/15 miniprep RFP psb1c3 /1.3 | 0.1 | - | 0.2 | 7.4 | 10 | ||||
8/24 miniprep INP 1c3 /0.68 | - | - | 0.2 | 8.12 | 10 | ||||
8/15 miniprep RFP psb1c3 /1.3 | - | - | 0.2 | 7.5 | 10 |
8/26
PCR (Target)
LiTemplates/(µl) | Primer1/(µl) | Primer2/(µl) | Buffer/(µl) | MilliQ/(µl) | Any Other/(µl) | Total/(µl) |
---|---|---|---|---|---|---|
scfv from MK | c.scfv fw/0.75 | c.scfv rv/0.75 | 2x KAPA Hifi /12.5 | 11 | 25 | |
none | c.scfv fw/0.75 | c.scfv rv/0.75 | 2x KAPA Hifi /5 | 4.4 | 10 |
8/26
Activation Check of Xba
UchinoLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kb ladder/2 | |
2 | [8] RFP/10 | |
3 | [6] RFP EcoRI/10 | |
4 | [2] RFP XbaI/10 | |
5 | [4] RFP EcoRI, XbaI /10 | |
6 | [7] INP /10 | |
7 | [5] INP EcoRI /10 | |
8 | [1] INP XbaI /10 | |
9 | [3] INP EcoRI, XbaI/10 |
[img45-1]
[img45-2]
8/27
PCR (Target)
LiTemplates/(µl) | Primer1/(µl) | Primer2/(µl) | Buffer/(µl) | MilliQ/(µl) | Any Other/(µl) | Total/(µl) |
---|---|---|---|---|---|---|
s.BAN | BAN.Fw/ 0.75 | BAN.Rv/ 0.75 | 11 | 2xKAPA HiFi/ 12.5 | 25 | |
s.BAN | BAN.Fw/ 0.75 | BAN.Rv/ 0.75 | 11 | 2xKAPA HiFi/ 12.5 | 25 | |
s.BAN | BAN.Fw/ 0.75 | BAN.Histag/ 0.75 | 11 | 2xKAPA HiFi/ 12.5 | 25 | |
scfv | scfv.Fw/ 0.75 | scfv.Rv/ 0.75 | 11 | 2xKAPA HiFi/ 12.5 | 25 | |
8/24 miniprep INP | INP.Fw/ 0.75 | INP.Rv/ 0.75 | 11 | 2xKAPA HiFi/ 12.5 | 25 | |
8/24 miniprep INP | INP.Fw/ 0.75 | INP.Rv.Histag/ 0.75 | 11 | 2xKAPA HiFi/ 12.5 | 25 |
8/27
PCR (Steps)
LiSteps | Temparature | Time | Cycle |
---|---|---|---|
Predenature | 95 | 3min | 1 |
Denature | 98 | 20sec | 25 |
Annealing | 65 | 15sec | 25 |
Extension | 72 | 30sec | 25 |
Final Elogation | 72 | 5min | 1 |
Final Holding | 4 | - | 1 |
9/8
Restriction Enzyme Digestion
NotsuSample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffer/(µl) | BSA/(µl) | MilliQ/(µl) | Total/(µl) |
---|---|---|---|---|---|---|---|---|---|
[1] 8/15 miniprep 1c3 RFP /14 | 0.5 | 0.5 | - | 10xH /3 | 12 | 30 | |||
[2] 8/24 miniprep 3c5 RFP /8.5 | 0.5 | - | 0.5 | 10xH /3 | 17.5 | 30 | |||
[3] 8/24 miniprep 3c5 RFP /8.5 | 0.5 | 0.5 | - | 10xH /3 | 17.5 | 30 | |||
[4] 8/24 miniprep BBa_J61002 p- /24 | 0.5 | - | 0.5 | 10xH /3 | 2 | 30 |
9/9
Electrophoresis
NotsuLane | Restriction Enzyme Digestion Products |
---|---|
1 | 100bp ladder 9µL |
2 | 8/24 miniprep p- EPcut 30µL |
9/9
Electrophoresis
Sukegawa, NotsuLane | Restriction Enzyme Digestion Products |
---|---|
1 | 1kbp ladder 9µL |
2 | 8/15 miniprep 1C3RFP EScut 30µL |
3 | 8/24 miniprep 3C5RFP EPcut 30µL |
4 | 8/24 miniprep 3C5RFP EScut 30µL |
9/14
PCR (Target)
LiTemplates/(µl) | Primer1/(µl) | Primer2/(µl) | Buffer/(µl) | MilliQ/(µl) | Any Other/(µl) | Total/(µl) |
---|---|---|---|---|---|---|
8/24 miniprep INP | INPfw/0.75 | INPRv/0.75 | 2×KAPAHiFi | 11 | 25 | |
8/24 miniprep INP | INPfw/0.75 | INPHisRv/0.75 | 2×KAPAHiFi | 11 | 25 | |
BAN | BANFw/0/75 | BANRv/0.75 | 2×KAPAHiFi | 11 | 25 | |
BAN | BANFw/0/75 | BANHisRv/0.75 | 2×KAPAHiFi | 11 | 25 | |
BAN | BANFw/0/75 | RBSRv/0.75 | 2×KAPAHiFi | 11 | 25 | |
scFv fromMk | scFvFw/0/75 | scFvRv/0/75 | 2×KAPAHiFi | 11 | 25 | |
scFv fromMk | scFvHisFw/0.75 | scFvRv/0.75 | 2×KAPAHiFi | 11 | 25 |
9/14
PCR (Steps)
LiSteps | Temparature | Time | Cycle |
---|---|---|---|
1 | 95 | 3min | 1 |
2 | 98 | 70sec | 25 |
3 | 68 | 15sec | 25 |
4 | 72 | 30sec | 25 |
5 | 72 | 5min | 1 |
6 | 10 | - | 1 |
9/14
Gel Extraction
KanekoLane | Restriction Enzyme Digestion Products |
---|---|
2 | ladder/6 |
4 | 9/14 PCR1/10 |
6 | 9/14 PCR2/10 |
8 | 9/14 PCR3/10 |
10 | 9/14 PCR4/10 |
12 | 9/14PCR5/10 |
14 | 9/14 PCR6/10 |
16 | 9/14 PCR7/10 |
9/14
PCR (Target)
LiTemplates/(µl) | Primer1/(µl) | Primer2/(µl) | Buffer/(µl) | MilliQ/(µl) | Any Other/(µl) | Total/(µl) |
---|---|---|---|---|---|---|
3sBAN/0.15+6scFvfromMK/0.15 | BANFw/0/75 | scFvRv/0.75 | 2×KAPAHiFi/12.5 | 25 | ||
4sBAN/0.15+7scFvfromMK/0.15 | BANFw/0/75 | scFvRv/0.75 | 2×KAPAHiFi/12.5 | 25 | ||
1INP8/24miniprep/0.15+5sBAN0.15+scFvfromMK/0.15 | BANFw/0/75 | scFvRv/0.75 | 2×KAPAHiFi/12.5 | 25 | ||
2INP8/24miniprep/0.15 | BANFw/0/75 | scFvRv/0.75 | 2×KAPAHiFi/12.5 | 25 |
9/15
Restriction Enzyme Digestion
Li, UchinoSample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffer/(µl) | BSA/(µl) | MilliQ/(µl) | Total/(µl) |
---|---|---|---|---|---|---|---|---|---|
3sBAN+6scFvfromMKPCRproduct | 34 | 1 | 1 | 4 | 40 | ||||
4sBAN+7scFvfromMK PCRproduct | 34 | 1 | 1 | 4 | 40 | ||||
1INP8/24miniprep+5sBAN+6scFvfromMKPCRproduct | 16 | 1 | 1 | 2 | 20 | ||||
2INP8/24miniprep+5sBAN+7scFvfromMkPCRproduct | 34 | 1 | 1 | 4 | 40 |
9/15
Gel Extraction
Li, UchinoLane | Restriction Enzyme Digestion Product | Volume/(µl) |
---|---|---|
1 | 1kb ladder | |
2 | 3sBAN+6scFvfromMkPCRproductEScut | 20 |
3 | 3sBAN+6scFvfromMkPCRproductEScut | 20 |
4 | 4sBAN+7scFvfromMkPCRproductEScut | 20 |
5 | 4sBAN+7scFvfromMkPCRproductEScut | 20 |
6 | 1INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut | 20 |
7 | 2INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut | 20 |
8 | 2INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut | 20 |
9 | RFP3C5PCRproduct |
9/16
Colony PCR (2Column)
Uchino, MichimoriName I | Name II |
---|---|
9/15 transformation BANscFv 3C5 colony1~16 | VF+VR |
9/15 transformation INPscFv 3C5 colony1~16 | VF+VR |
9/15 transformation BANHisscFv 3C5 colony1~16 | VF+VR |
9/15 transformation INPHisscFv 3C5 colony1~16 | VF+VR |
9/16
PCR (Steps)
Uchino, MichimoriSteps | Temparature | Time | Cycle |
---|---|---|---|
1 | 94 | 2 | 1 |
2 | 94 | 0.5 | 25 |
3 | 55 | 0.5 | 25 |
4 | 68 | 1 | 25 |
5 | 4 | 7 | 1 |
6 | 4 | - | 1 |
9/16
Gel Extraction
Li, Kaneko, NotsuLane | Restriction Enzyme Digestion Product | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | BANscFv3C5 colony 9 | 10 |
3 | BANscFv3C5 colony 10 | 10 |
4 | BANscFv3C5 colony 11 | 10 |
5 | BANscFv3C5 colony 12 | 10 |
6 | BANscFv3C5 colony 13 | 10 |
7 | BANscFv3C5 colony 14 | 10 |
8 | BANscFv3C5 colony 15 | 10 |
9 | BANscFv3C5 colony 16 | 10 |
10 | BANHisscFv3C5 colony 9 | 10 |
11 | BANHisscFv3C5 colony 10 | 10 |
12 | BANHisscFv3C5 colony 11 | 10 |
13 | BANHisscFv3C5 colony 12 | 10 |
14 | BANHisscFv3C5 colony 13 | 10 |
15 | BANHisscFv3C5 colony 14 | 10 |
16 | BANHisscFv3C5 colony 15 | 10 |
17 | BANHisscFv3C5 colony 16 | 10 |
18 | BANscFv3C5 colony 1 | 10 |
9/16
Gel Extraction
Li, Kaneko, NotsuLane | Restriction Enzyme Digestion Product | Volume/(µl) |
---|---|---|
1 | 1kb ladder | 5 |
2 | INPscFv3C5 colony 9 | 10 |
3 | INPscFv3C5 colony 10 | 10 |
4 | INPscFv3C5 colony 11 | 10 |
5 | INPscFv3C5 colony 12 | 10 |
6 | INPscFv3C5 colony 13 | 10 |
7 | INPscFv3C5 colony 14 | 10 |
8 | INPscFv3C5 colony 15 | 10 |
9 | INPscFv3C5 colony 16 | 10 |
10 | INPHisscFv3C5 colony 9 | 10 |
11 | INPHisscFv3C5 colony 10 | 10 |
12 | INPHisscFv3C5 colony 11 | 10 |
13 | INPHisscFv3C5 colony 12 | 10 |
14 | INPHisscFv3C5 colony 13 | 10 |
15 | INPHisscFv3C5 colony 14 | 10 |
16 | INPHisscFv3C5 colony 15 | 10 |
17 | INPHisscFv3C5 colony 16 | 10 |
18 | BANscFv3C5 colony 1 | 10 |
9/17
Electrophoresis
Michimori, KanekoLane | Restriction Enzyme Digestion Products |
---|---|
1 | buffer/5 |
2 | 1kb ladder/5 |
3 | BAN 9 P/4.5 |
4 | BAN 9 N/4.5 |
5 | BAN14 P/4.5 |
6 | BAN14 N/4.5 |
7 | BANHis14 P/4.5 |
8 | BANHis14/4.5 |
9/17
Electrophoresis
KanekoLane | sample/(µl) | Length(bp) |
---|---|---|
1 | 1kbp ladder | |
2 | none | |
3 | BANHis16 p | |
4 | BANHis16 n | |
5 | INP 12 p | |
6 | INP 14 p | |
7 | INP 12 n | |
8 | INP 14 n |
9/17
Electrophoresis
KanekoLane | Restriction Enzyme Digestion Products |
---|---|
1 | - |
2 | - |
3 | 1kbladder/5 |
4 | INPHis9 P/4.5 |
5 | INPHis9N/4.5 |
6 | INPHis12P/4.5 |
7 | INPHis12N/4.5 |
8 | INP14 N/4.5 |
9/17
Restriction Enzyme Digestion
Uchino, MichimoriSample | DNA/(µl) | EcoR1/(µl) | Xba1/(µl) | Spe1/(µl) | Pst1/(µl) | Buffer/(µl) | BSA/(µl) | MilliQ/(µl) | Total/(µl) |
---|---|---|---|---|---|---|---|---|---|
BAN9 | 2 | 0.5 | 0.5 | 10×H/1 | 6 | 10 | |||
BAN9 | 1 | 0 | 0 | 10×H/1 | 8 | 10 | |||
BAN14 | 2 | 0.5 | 0.5 | 10×H/1 | 6 | 10 | |||
BAN14 | 1 | 0 | 0 | 10×H/1 | 8 | 10 | |||
BANHis14 | 2 | 0.5 | 0.5 | 10×H/1 | 6 | 10 | |||
BANHis 14 | 1 | 0 | 0 | 10×H/1 | 8 | 10 | |||
BANHis 16 | 2 | 0.5 | 0.5 | 10×H/1 | 6 | 10 | |||
BANHis16 | 1 | 0 | 0 | 10×H/1 | 8 | 10 | |||
INP12 | 2 | 0.5 | 0.5 | 10×H/1 | 6 | 10 | |||
INP12 | 1 | 0 | 0 | 10×H/1 | 8 | 10 | |||
INP14 | 2 | 0.5 | 0.5 | 10×H/1 | 6 | 10 | |||
INP 14 | 1 | 0 | 0 | 10×H/1 | 8 | 10 | |||
INP 9 | 2 | 0.5 | 0.5 | 10×H/1 | 6 | 10 | |||
INP9 | 1 | 0 | 0 | 10×H/1 | 8 | 10 | |||
INPHis12 | 2 | 0.5 | 0.5 | 10×H/1 | 6 | 10 | |||
INPHis12 | 1 | 0 | 0 | 10×H/1 | 8 | 10 |
9/17
Miniprep
NotsuDNA | Concentration/(µg/ml) | 260/280 | 260/230 |
---|---|---|---|
9/16 liquid culture BANscFv12 | |||
9/16 liquid culture BANscFv14 | |||
9/16 liquid culture BANHisscFv12 | |||
9/16 liquid culture BANHisscFv14 | |||
9/16 liquid culture INPHisscFv12 | |||
9/16 liquid culture INPHisscFv14 | |||
9/16 liquid culture INPHisscFv10 | |||
9/16 liquid culture BANscFv |