Difference between revisions of "Team:Kyoto/Notebook 2015"

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    <div id="contents">
 
    <div id="contents">
  
 +
<div class="kyoto-calendar">
 +
  <table>
 +
      <tr>
 +
        <th colspan=7>August</th>
 +
      </tr>
 +
      <tr>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
        <td>1</td>
 +
      </tr>
 +
      <tr>
 +
        <td>2</td>
 +
        <td>3</td>
 +
        <td>4</td>
 +
        <td>5</td>
 +
        <td>6</td>
 +
        <td>7</td>
 +
        <td>8</td>
 +
      </tr>
 +
      <tr>
 +
        <td>9</td>
 +
        <td>10</td>
 +
        <td>11</td>
 +
        <td>12</td>
 +
        <td>13</td>
 +
        <td><a href="#0814">14</a></td>
 +
        <td><a href="#0815">15</a></td>
 +
      </tr>
 +
      <tr>
 +
        <td><a href="#0816">16</a></td>
 +
        <td><a href="#0817">17</a></td>
 +
        <td><a href="#0818">18</a></td>
 +
        <td><a href="#0819">19</a></td>
 +
        <td><a href="#0820">20</a></td>
 +
        <td><a href="#0821">21</a></td>
 +
        <td>22</td>
 +
      </tr>
 +
      <tr>
 +
        <td>23</td>
 +
        <td><a href="#0824">24</a></td>
 +
        <td><a href="#0825">25</a></td>
 +
        <td><a href="#0826">26</a></td>
 +
        <td><a href="#0827">27</a></td>
 +
        <td>28</td>
 +
        <td>29</td>
 +
    </tr>
 +
      <tr>
 +
        <td>30</td>
 +
        <td>31</td>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
      </tr>
 +
  </table>
  
 +
  <table>
 +
      <tr>
 +
        <th colspan=7>September</th>
 +
      </tr>
 +
      <tr>
 +
        <td></td>
 +
        <td></td>
 +
        <td>1</td>
 +
        <td>2</td>
 +
        <td>3</td>
 +
        <td>4</td>
 +
        <td>5</td>
 +
      </tr>
 +
      <tr>
 +
        <td>6</td>
 +
        <td>7</td>
 +
        <td><a href="#0908">8</a></td>
 +
        <td><a href="#0909">9</a></td>
 +
        <td>10</td>
 +
        <td>11</td>
 +
        <td>12</td>
 +
      </tr>
 +
      <tr>
 +
        <td>13</td>
 +
        <td><a href="#0914">14</a></td>
 +
        <td><a href="#0915">15</a></td>
 +
        <td><a href="#0916">16</a></td>
 +
        <td><a href="#0917">17</a></td>
 +
        <td>18</td>
 +
        <td>19</td>
 +
      </tr>
 +
      <tr>
 +
        <td>20</td>
 +
        <td>21</td>
 +
        <td>22</td>
 +
        <td>23</td>
 +
        <td>24</td>
 +
        <td>25</td>
 +
        <td>26</td>
 +
      </tr>
 +
      <tr>
 +
        <td>27</td>
 +
        <td>28</td>
 +
        <td>29</td>
 +
        <td>30</td>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
      </tr>
 +
      <tr>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
        <td></td>
 +
      </tr>
 +
  </table>
  
 +
</div>
  
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0814" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/14</h3></span>
 +
<span class="keln_exp"><h4>Transformation</h4></span>
 +
<span class="keln_researcher">Li, Uchino, Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Sample Name</th><th>Sample Volume (&micro;l)</th><th>Competent Cells/(&micro;l)</th><th>Medium</th></tr>
 +
<tr><td>RFP 0.5ng/&micro;l</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr>
 +
<tr><td>RFP 5ng/&micro;l</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr>
 +
<tr><td>RFP 10ng/&micro;l</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr>
 +
<tr><td>RFP 20ng/&micro;l</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr>
 +
<tr><td>RFP 50ng/&micro;l</td><td>2</td><td>DH5α /20</td><td>LB(CP)</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0814" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/14</h3></span>
 +
<span class="keln_exp"><h4>Gel Extraction</h4></span>
 +
<span class="keln_researcher">Li, Uchino, Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(&micro;l)</th></tr>
 +
<tr><td>1</td><td>10/1 PQ(3)</td><td>about 23.5</td></tr>
 +
<tr><td>2</td><td>1kb ladder</td><td>6</td></tr>
 +
<tr><td>3</td><td>10/1 PQ(3)</td><td>about 23.5</td></tr>
 +
<tr><td>4</td><td>10/1 PQ(3)</td><td>about 24</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/7/7a/T--Kyoto--8_14_No1_Gel_Extraction_Notsu_09_19_12_14_09No.20814.jpg">
 +
</div>
 +
<p class="keln_note">Total volume of samples of lane 1~3 was 71.5&micro;l and it was divided into three.</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Egashira -->
 +
<div class="keln_container">
 +
<a name="0814" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/14</h3></span>
 +
<span class="keln_exp"><h4>Transformation</h4></span>
 +
<span class="keln_researcher">Li, Uchino, Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Sample Name</th><th>Sample Volume</th><th>Competent Cells/(&micro;l)</th><th>Medium</th></tr>
 +
<tr><td>3C5</td><td>10&micro;l</td><td>DH5α 20&micro;l</td><td>LB(CP)</td></tr>
 +
<tr><td>P+</td><td>10&micro;l</td><td>DH5α 20&micro;l</td><td>LB(CP)</td></tr>
 +
<tr><td>P-</td><td>10&micro;l</td><td>DH5α 20&micro;l</td><td>LB(CP)</td></tr>
 +
<tr><td>RBS</td><td>10&micro;l</td><td>DH5α 20&micro;l</td><td>LB(CP)</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0814" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/14</h3></span>
 +
<span class="keln_exp"><h4>Liquid Culture</h4></span>
 +
<span class="keln_researcher">Li, Uchino, Iguchi, Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Name</th><th>medium</th></tr>
 +
<tr><td>8/13 transformation RFP 20ng/&micro;l colony1</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony1</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony2</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony3</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony4</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony5</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony6</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony7</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony8</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony9</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony10</td><td>LB(CP)</td></tr>
 +
<tr><td>8/13 transformation part RFP colony11</td><td>LB(CP)</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0815" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/15</h3></span>
 +
<span class="keln_exp"><h4>Miniprep</h4></span>
 +
<span class="keln_researcher">Li, Uchino, Notsu, Kaneko, Watanabe</span>
 +
<table class="keln_table">
 +
<tr><th>DNA</th><th>Concentration/(&micro;g/ml)</th><th>260/280</th><th>260/230</th></tr>
 +
<tr><td>RFP1 /2&micro;l</td><td>82.5</td><td>1.40</td><td>1.22</td></tr>
 +
<tr><td>RFP2 /4&micro;l</td><td>142.5</td><td>1.69</td><td>2.05</td></tr>
 +
<tr><td>RFP3 /4&micro;l</td><td>50</td><td>1.55</td><td>1.71</td></tr>
 +
<tr><td>RFP4 /4&micro;l</td><td>57.5</td><td>1.64</td><td>1.88</td></tr>
 +
<tr><td>RFP6 /4&micro;l</td><td>98.75</td><td>1.71</td><td>1.40</td></tr>
 +
<tr><td>RFP(20) /4&micro;l</td><td>76.25</td><td>1.67</td><td>1.32</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Egashira -->
 +
<div class="keln_container">
 +
<a name="0815" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/15</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Notsu, Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr>
 +
<tr><td>1</td><td>1kb ladder 3&micro;l</td></tr>
 +
<tr><td>2</td><td>RFP1 10&micro;l</td></tr>
 +
<tr><td>3</td><td>RFP2 10&micro;l</td></tr>
 +
<tr><td>4</td><td>RFP3 10&micro;l</td></tr>
 +
<tr><td>5</td><td>RFP4 10&micro;l</td></tr>
 +
<tr><td>6</td><td>RFP6 10&micro;l</td></tr>
 +
<tr><td>7</td><td>RFP(20) 10&micro;l</td></tr>
 +
<tr><td>8</td><td>PCR1 5&micro;l</td></tr>
 +
<tr><td>9</td><td>PCR2 5&micro;l</td></tr>
 +
<tr><td>10</td><td>PCR3 5&micro;l</td></tr>
 +
<tr><td>11</td><td>PCR4 5&micro;l</td></tr>
 +
<tr><td>12</td><td> PCR5 5 &micro;l</td></tr>
 +
<tr><td>13</td><td>1kb ladder 3&micro;l</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/5/5e/T--Kyoto--8_15_No6_Electrophoresis_Egashira_02_08_02_44_07.JPG">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Egashira -->
 +
<div class="keln_container">
 +
<a name="0815" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/15</h3></span>
 +
<span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span>
 +
<span class="keln_researcher">Uchino, Notsu, Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Sample</th><th>DNA/(&micro;l)</th><th>EcoR1/(&micro;l)</th><th>Xba1/(&micro;l)</th><th>Spe1/(&micro;l)</th><th>Pst1/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>BSA/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td>8/15Miniprep PSB1C3-RFP1</td><td>24</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>19</td><td>50</td></tr>
 +
<tr><td>8/15Miniprep PSB1C3-RFP2</td><td>14</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>29</td><td>50</td></tr>
 +
<tr><td>8/15Miniprep PSB1C3-RFP3</td><td>40</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>3</td><td>50</td></tr>
 +
<tr><td>8/15Miniprep PSB1C3-RFP4</td><td>35</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>8</td><td>50</td></tr>
 +
<tr><td>8/15Miniprep PSB1C3-RFP6</td><td>20</td><td>1</td><td>0</td><td>0</td><td>1</td><td>5(H)</td><td>0</td><td>23</td><td>50</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0815" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/15</h3></span>
 +
<span class="keln_exp"><h4>colony PCR</h4></span>
 +
<span class="keln_researcher">Uchino, Notsu, Kaneko, Watanabe</span>
 +
<table class="keln_table">
 +
<tr><th>colony                                                                        Primers</th></tr>
 +
<tr><td>8/14 transformation pSB1C3-RFP1                    VF+VR</td></tr>
 +
<tr><td>8/14 transformation pSB1C3-RFP2                    VF+VR</td></tr>
 +
<tr><td>8/14 transformation pSB1C3-RFP3                    VF+VR</td></tr>
 +
<tr><td>8/14 transformation pSB1C3-RFP4                    VF+VR</td></tr>
 +
<tr><td>8/14 transformation pSB1C3-RFP1                    VF+VR</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0815" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/15</h3></span>
 +
<span class="keln_exp"><h4>PCR (Steps)</h4></span>
 +
<span class="keln_researcher">Uchino, Notsu, Kaneko, Watanabe</span>
 +
<table class="keln_table">
 +
<tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr>
 +
<tr><td>Pre Denature</td><td>94℃</td><td>2min</td><td>1</td></tr>
 +
<tr><td>Denature</td><td>94℃</td><td>30sec</td><td>30</td></tr>
 +
<tr><td>Annealing</td><td>55℃</td><td>30sec</td><td>30</td></tr>
 +
<tr><td>Extension</td><td>68℃</td><td>1min</td><td>30</td></tr>
 +
<tr><td>Final elongation</td><td>4℃</td><td>7min</td><td>1</td></tr>
 +
<tr><td>Final Holding</td><td>4℃</td><td>-</td><td>-</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0816" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/16</h3></span>
 +
<span class="keln_exp"><h4>Gel Extraction</h4></span>
 +
<span class="keln_researcher">Li, Iguchi, Notsu, Kaneko, Watanabe</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(&micro;l)</th></tr>
 +
<tr><td>1</td><td>1kb ladder</td><td>10</td></tr>
 +
<tr><td>2</td><td>blank</td><td></td></tr>
 +
<tr><td>3</td><td>8/15 digestion pSB1C3-RFP 1</td><td>55</td></tr>
 +
<tr><td>4</td><td>8/15 digestion pSB1C3-RFP 2</td><td>55</td></tr>
 +
<tr><td>5</td><td>8/15 digestion pSB1C3-RFP 3</td><td>36</td></tr>
 +
<tr><td>6</td><td>8/15 digestion pSB1C3-RFP 4</td><td>36</td></tr>
 +
<tr><td>7</td><td>8/15 digestion pSB1C3-RFP 6</td><td>36</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/7/77/T--Kyoto--8_16_No10_Gel_Extraction_Notsu_09_26_01_32_24.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0816" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/16</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Li, Iguchi, Notsu, Kaneko, Watanabe</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>8/16 Gel Extraction RFP1 /1</td><td></td></tr>
 +
<tr><td>2</td><td>8/16 Gel Extraction RFP2 /1</td><td></td></tr>
 +
<tr><td>3</td><td>8/16 Gel Extraction RFP3 /1</td><td></td></tr>
 +
<tr><td>4</td><td>8/16 Gel Extraction RFP4 /1</td><td></td></tr>
 +
<tr><td>5</td><td>blank</td><td></td></tr>
 +
<tr><td>6</td><td>8/16 pSB1C3-vector /1</td><td></td></tr>
 +
<tr><td>7</td><td>8/16 pSB1C3-vector /1</td><td></td></tr>
 +
<tr><td>8</td><td>1kladder</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/6/6f/T--Kyoto--8_16_No11_Electrophoresis_Notsu_09_26_01_55_23.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0816" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/16</h3></span>
 +
<span class="keln_exp"><h4>Ligation</h4></span>
 +
<span class="keln_researcher">Li, Iguchi, Notsu, Kaneko, Watanabe</span>
 +
<table class="keln_table">
 +
<tr><th>Vector DNA /(&micro;l)</th><th>insert DNA /(&micro;l)</th><th>ligase /(&micro;l)</th><th>10×buffer /(&micro;l)</th><th>MilliQ /(&micro;l)</th><th>Total /(&micro;l)</th></tr>
 +
<tr><td>pSB1C3 EPcut /1</td><td>RFP /4</td><td>0.5</td><td>1</td><td>3</td><td>9.5</td></tr>
 +
<tr><td>pSB1C3 EPcut /1</td><td>RFP /2</td><td>0.5</td><td>1</td><td>5</td><td>9.5</td></tr>
 +
<tr><td>pSB1C3 EPcut /1</td><td>RFP /4</td><td>0.5</td><td>1</td><td>3</td><td>9.5</td></tr>
 +
<tr><td>pSB1C3 EPcut /1</td><td>RFP /4</td><td>0.5</td><td>1</td><td>3</td><td>9.5</td></tr>
 +
<tr><td>pSB1C3 EPcut /1</td><td>-</td><td>0.5</td><td>1</td><td>7</td><td>9.5</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0817" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/17</h3></span>
 +
<span class="keln_exp"><h4>Liquid Culture</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Name</th><th>medium</th></tr>
 +
<tr><td>8/16 transformation pSB3C5 RFP1</td><td>LB(CP) /6</td></tr>
 +
<tr><td>8/16 transformation pSB3C5 RFP2</td><td>LB(CP) /6</td></tr>
 +
<tr><td>8/16 transformation pSB3C5 RFP1</td><td>LB(CP) /6</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0817" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/17</h3></span>
 +
<span class="keln_exp"><h4>Transformation</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Sample Name</th><th>Sample Volume (&micro;l)</th><th>Competent Cells/(&micro;l)</th><th>Medium</th></tr>
 +
<tr><td>pSB1C3 P+</td><td>2</td><td>DH5α /20</td><td>LB</td></tr>
 +
<tr><td>pSB1C3 P-</td><td>2</td><td>DH5α /20</td><td>LB</td></tr>
 +
<tr><td>pSB1C3 RBS</td><td>2</td><td>DH5α /20</td><td>LB</td></tr>
 +
<tr><td>pSB3C5 RFP</td><td>2</td><td>DH5α /20</td><td>LB</td></tr>
 +
<tr><td>8/16 ligation pSB1C3 RFP1</td><td>2</td><td>DH5α</td><td>LB</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Notsu -->
 +
<div class="keln_container">
 +
<a name="0817" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/17</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Iguchi</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kbp ladder /3</td><td></td></tr>
 +
<tr><td>2</td><td>blank</td><td></td></tr>
 +
<tr><td>3</td><td>pSB1C3-RFP(ligate)1 /2</td><td></td></tr>
 +
<tr><td>4</td><td>pSB1C3-RFP(ligate)2 /2</td><td></td></tr>
 +
<tr><td>5</td><td>pSB1C3-RFP(ligate)3 /2</td><td></td></tr>
 +
<tr><td>6</td><td>pSB1C3-RFP(ligate)4 /3</td><td></td></tr>
 +
<tr><td>7</td><td>Vector (Ctrl) /5</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/c/c7/T--Kyoto--8_17_No14_Electrophoresis_Notsu_09_29_12_26_11.JPG">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0818" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/18</h3></span>
 +
<span class="keln_exp"><h4>Liquid Culture</h4></span>
 +
<span class="keln_researcher">Li, Iguchi, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Name</th><th>medium</th></tr>
 +
<tr><td>INP [1] BBa_K811005</td><td>LB(CP) / 6ml</td></tr>
 +
<tr><td>INP [2] BBa_K811005</td><td>LB(CP) / 6ml</td></tr>
 +
<tr><td>INP [3] BBa_K811005</td><td>LB(CP) / 6ml</td></tr>
 +
<tr><td>scfv04 [1] BBa_K875004</td><td>LB(CP) / 6ml</td></tr>
 +
<tr><td>scfv04 [2] BBa_K875004</td><td>LB(CP) / 6ml</td></tr>
 +
<tr><td>scfv04 [3] BBa_K875004</td><td>LB(CP) / 6ml</td></tr>
 +
<tr><td>scfv06 [1] BBa__K875006</td><td>LB(CP) / 6ml</td></tr>
 +
<tr><td>scfv06 [2] BBa_K875006</td><td>LB(CP) / 6ml</td></tr>
 +
<tr><td>scfv06 [3] BBa_K875006</td><td>LB(CP) / 6ml</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0818" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/18</h3></span>
 +
<span class="keln_exp"><h4>Miniprep</h4></span>
 +
<span class="keln_researcher">Li, Iguchi, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>DNA</th><th>Concentration/(&micro;g/ml)</th><th>260/280</th><th>260/230</th></tr>
 +
<tr><td>8/17 Liquid Culture 3C5 [1] / 5&micro;l</td><td>77</td><td>1.69</td><td>1.45</td></tr>
 +
<tr><td>8/17 Liquid Culture 3C5 [2] / 2&micro;l</td><td>40</td><td>1.67</td><td>1.17</td></tr>
 +
<tr><td>8/17 Liquid Culture 3C5 [3] / 2&micro;l</td><td>15</td><td>3.75</td><td>3.70</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0818" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/18</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kb ladder /1</td><td>-</td></tr>
 +
<tr><td>2</td><td>[1] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr>
 +
<tr><td>3</td><td>[2] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr>
 +
<tr><td>4</td><td>[1'] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr>
 +
<tr><td>5</td><td>[2'] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr>
 +
<tr><td>6</td><td>[3'] psb3c5(8/18 miniprep) /4.2</td><td>3807</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/c/c5/T--Kyoto--8_18_No18_Electrophoresis_Kaneko_05_20_04_12_53.jpg">
 +
</div>
 +
<p class="keln_note">[img18]</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0818" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/18</h3></span>
 +
<span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span>
 +
<span class="keln_researcher">Li, Iguchi, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Sample</th><th>DNA/(&micro;l)</th><th>EcoR1/(&micro;l)</th><th>Xba1/(&micro;l)</th><th>Spe1/(&micro;l)</th><th>Pst1/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>BSA/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td></td><td>psb3c5(8/18miniprep) [1'], [2'], [3'] mixed / 50</td><td>1.0</td><td></td><td></td><td>1.0</td><td>5.6</td><td></td><td></td><td>56.6</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0819" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/19</h3></span>
 +
<span class="keln_exp"><h4>Transformation</h4></span>
 +
<span class="keln_researcher">Li, Iguchi, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Sample Name</th><th>Sample Volume (&micro;l)</th><th>Competent Cells/(&micro;l)</th><th>Medium</th></tr>
 +
<tr><td>BBa_ J61002 p+</td><td>2</td><td>DH5a /20</td><td>LB(Amp)</td></tr>
 +
<tr><td>BBa_J61002 p-</td><td>2</td><td>DH5a /20</td><td>LB(Amp)</td></tr>
 +
<tr><td>BBa_1A2 RBS</td><td>2</td><td>DH5a /20</td><td>LB(Amp)</td></tr>
 +
</table>
 +
</div>
 +
<p class="keln_note">Failed due to deactivation of Amp</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0819" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/19</h3></span>
 +
<span class="keln_exp"><h4>MutationPCR</h4></span>
 +
<span class="keln_researcher"></span>
 +
<table class="keln_table">
 +
<tr><th>Templates /&micro;l</th><th>Primer /&micro;l</th><th>Primer STAR Max Premix /&micro;l</th><th>MilliQ /&micro;l</th><th>Total(&micro;l)</th></tr>
 +
<tr><td>scfv plasmid /0.1</td><td>m.scfv FW /1, m.scfvRV/1</td><td>25</td><td>22.9</td><td>50</td></tr>
 +
<tr><td>scfv plasmid (nega) /0.1</td><td>0</td><td>5</td><td>4.9</td><td>10</td></tr>
 +
<tr><td>(nega) /0</td><td>m.scfv FW/0.2, m.scfvRV/0.2</td><td>5</td><td>4.6</td><td>10</td></tr>
 +
</table>
 +
</div>
 +
<p class="keln_note">---30cycle---<br>98℃ 10''<br>55℃ 15''<br>72℃ 20''<br>----------------<br>4℃ holding</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0819" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/19</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kb ladder/2</td><td>-</td></tr>
 +
<tr><td>2</td><td>scfv plasmid +primer(m.scfv FW, m.scfv RV) mutation PCR product /5</td><td>3600</td></tr>
 +
<tr><td>3</td><td>scfv plasmid mutation PCR product /5</td><td>-</td></tr>
 +
<tr><td>4</td><td>primer(m.scfv FW, m.scfv RV) mutation PCR product /5</td><td>-</td></tr>
 +
<tr><td>5</td><td>psb3c5 EPcut product /5</td><td>2600(backborn), 1200(inseert<RFP>)</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/6/64/T--Kyoto--8_19_No22_Electrophoresis_Kaneko_05_20_04_27_06.jpg">
 +
</div>
 +
<p class="keln_note">[img22]</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0819" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/19</h3></span>
 +
<span class="keln_exp"><h4>Concentration</h4></span>
 +
<span class="keln_researcher">Li, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Sample</th><th>OD600</th><th>Bacterial cells /ml</th></tr>
 +
<tr><td>INP [1] K811005</td><td>0.643</td><td>5.14x10^8</td></tr>
 +
<tr><td>scfv06 K875006</td><td>0.634</td><td>5.07x10^8</td></tr>
 +
<tr><td>scfv04 K875004</td><td>0.618</td><td>4.94x10^8</td></tr>
 +
</table>
 +
</div>
 +
<p class="keln_note">1 OD 600 equals to 8x10^8 cells /ml</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0819" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/19</h3></span>
 +
<span class="keln_exp"><h4>Miniprep</h4></span>
 +
<span class="keln_researcher">Li, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>DNA</th><th>Concentration/(&micro;g/ml)</th><th>260/280</th><th>260/230</th></tr>
 +
<tr><td>scfv 04[1] K875004 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
<tr><td>scfv 04[2] K875004 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
<tr><td>scfv 04[3] K875004 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
<tr><td>scfv 06[1] K875006 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
<tr><td>scfv 06[2] K875006 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
<tr><td>scfv 06[3] K875006 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
<tr><td>INP [1] K811005 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
<tr><td>INP [2] K811005 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
<tr><td>INP [3] K811005 /3&micro;l</td><td>56</td><td>1.63</td><td>1.45</td></tr>
 +
</table>
 +
</div>
 +
<p class="keln_note">There was a problem with an instrument</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0820" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/20</h3></span>
 +
<span class="keln_exp"><h4>Transformation</h4></span>
 +
<span class="keln_researcher">Li, Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>Sample Name</th><th>Sample Volume (&micro;l)</th><th>Competent Cells/(&micro;l)</th><th>Medium</th></tr>
 +
<tr><td>8/19 mutation PCR scfv plasmid (nega)</td><td>1</td><td>DH5a/ 20</td><td>LB(CP)</td></tr>
 +
</table>
 +
</div>
 +
<p class="keln_note">8/19 mutation PCR:<br>1&micro;l extraction of scfv plasmid (nega)/10&micro;l was folded 300 times.</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0820" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/20</h3></span>
 +
<span class="keln_exp"><h4>Transformation</h4></span>
 +
<span class="keln_researcher">Li, Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>Sample Name</th><th>Sample Volume (&micro;l)</th><th>Competent Cells/(&micro;l)</th><th>Medium</th></tr>
 +
<tr><td>8/19 mutation PCR scfv plasmid</td><td>1 [note:1]</td><td>DH5a/20</td><td>LB(AMP)</td></tr>
 +
<tr><td>8/19 mutation PCR scfv plasmid (nega)</td><td>1 [note:2]</td><td>DH5a/20</td><td>LB(AMP)</td></tr>
 +
<tr><td>BBa_J61002 p+</td><td>1</td><td>DH5a/20</td><td>LB(AMP)</td></tr>
 +
<tr><td>BBa_J61002 p-</td><td>1</td><td>DH5a/20</td><td>LB(AMP)</td></tr>
 +
<tr><td>BBa_1A2 RBS</td><td>1</td><td>DH5a/20</td><td>LB(AMP)</td></tr>
 +
</table>
 +
</div>
 +
<p class="keln_note">[note:1]<br>8/19 mutation PCR:<br>1&micro;l extraction of scfv plasmid (nega)/50&micro;l was folded 300 times.<br>[note:2]<br>8/19 mutation PCR:<br>1&micro;l extraction of scfv plasmid (nega)/10&micro;l was folded 300 times.</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0820" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/20</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kb ladder /1.5</td><td></td></tr>
 +
<tr><td>2</td><td>9/19 miniprep scfv04 [1]</td><td></td></tr>
 +
<tr><td>3</td><td>9/19 miniprep scfv04 [2]</td><td></td></tr>
 +
<tr><td>4</td><td>9/19 miniprep scfv04 [3]</td><td></td></tr>
 +
<tr><td>5</td><td>9/19 miniprep scfv06 [1]</td><td></td></tr>
 +
<tr><td>6</td><td>9/19 miniprep scfv06 [2]</td><td></td></tr>
 +
<tr><td>7</td><td>9/19 miniprep scfv06 [3]</td><td></td></tr>
 +
<tr><td>8</td><td>9/19 miniprep INP [1]</td><td></td></tr>
 +
<tr><td>9</td><td>9/19 miniprep INP [2]</td><td></td></tr>
 +
<tr><td>10</td><td>9/19 miniprep INP [3]</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/5/53/T--Kyoto--8_20_No26_Electrophoresis_Kaneko_05_20_04_44_45.jpg">
 +
</div>
 +
<p class="keln_note">[img26]</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>Colony PCR</h4></span>
 +
<span class="keln_researcher">Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>Colony</th><th>Primers</th></tr>
 +
<tr><td>8/20 transformation RBS</td><td>VF+VR</td></tr>
 +
<tr><td>8/20 transformation p+</td><td>VF+VR</td></tr>
 +
<tr><td>8/20 transformation p-</td><td>VF+VR</td></tr>
 +
<tr><td>8/20 dilution INP</td><td>VF+VR</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>PCR (Steps)</h4></span>
 +
<span class="keln_researcher">Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr>
 +
<tr><td>Pre</td><td>94℃</td><td>2min</td><td>1</td></tr>
 +
<tr><td>De</td><td>94℃</td><td>30 sec</td><td>30</td></tr>
 +
<tr><td>An</td><td>55℃</td><td>30 sec</td><td>30</td></tr>
 +
<tr><td>Ex</td><td>68℃</td><td>1min</td><td>30</td></tr>
 +
<tr><td>Final E</td><td>4℃</td><td>7min</td><td>1</td></tr>
 +
<tr><td>Final Hold</td><td>4℃</td><td>-</td><td>-</td></tr>
 +
</table>
 +
</div>
 +
<p class="keln_note">Autoclaved distrilled water /23&micro;l<br>2xQuick taq /25&micro;l<br>10 pmol/&micro;l primer (VF) /1&micro;l<br>10 pmol/&micro;l primer (VR) /1&micro;l<br>Template DNA /0&micro;l<br>Total 50&micro;l</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kb ladder /2</td><td></td></tr>
 +
<tr><td>2</td><td>8/21 colony PCR RBS /all</td><td></td></tr>
 +
<tr><td>3</td><td>8/21 colony PCR p+ /all</td><td></td></tr>
 +
<tr><td>4</td><td>8/21 colony PCR p- /all</td><td></td></tr>
 +
<tr><td>5</td><td>8/21 colony PCR INP /all</td><td></td></tr>
 +
<tr><td>6</td><td>8/21 colony PCR Nega /all</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/0/04/T--Kyoto--8_21_No28_Electrophoresis_Kaneko_05_20_04_54_01%2C1.jpg"><img src="https://static.igem.org/mediawiki/2016/b/b5/T--Kyoto--8_21_No28_Electrophoresis_Kaneko_05_20_04_54_01%2C2.jpg">
 +
</div>
 +
<p class="keln_note">[img29-1]<br>weak band except INP -> retry<br>colony PCR and Electrophoresis were conducted under the same condition.<br>[img29-2]<br>RBS and INP success.<br>P+ and P-  failed  -> retry.</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>PCR (Steps)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr>
 +
<tr><td>Predenature</td><td>95℃</td><td>3min</td><td>1</td></tr>
 +
<tr><td>Denature</td><td>98℃</td><td>20sec</td><td>25</td></tr>
 +
<tr><td>Annealing</td><td>70℃</td><td>15sec</td><td>25</td></tr>
 +
<tr><td>Extension</td><td>72℃</td><td>30sec</td><td>25</td></tr>
 +
<tr><td>Final Elongation</td><td>72℃</td><td>5min</td><td>1</td></tr>
 +
<tr><td>Final Holding</td><td>4℃</td><td>-</td><td>1</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>PCR (Target)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Templates/(&micro;l)</th><th>Primer1/(&micro;l)</th><th>Primer2/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Any Other/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td>scfv 8/20 transformation</td><td>cscfv.f /0.75</td><td>cscfv.r /0.75</td><td>2x KAPA Hifi /12.5</td><td>11</td><td></td><td>25</td></tr>
 +
<tr><td>- (nega)</td><td>cscfv.f /0.3</td><td>cscfv.f /0.3</td><td>2x KAPA Hifi /5</td><td>4.4</td><td></td><td>10</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>Colony PCR</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Colony</th><th>Primers</th></tr>
 +
<tr><td>8/20 transformation p+ [1]</td><td>VF+VR</td></tr>
 +
<tr><td>8/20 transformation p+ [2]</td><td>VF+VR</td></tr>
 +
<tr><td>8/20 transformation p+ [3]</td><td>VF+VR</td></tr>
 +
<tr><td>8/20 transformation p- [1]</td><td>VF+VR</td></tr>
 +
<tr><td>8/20 transformation p- [2]</td><td>VF+VR</td></tr>
 +
<tr><td>8/20 transformation p- [3]</td><td>VF+VR</td></tr>
 +
<tr><td>8/18 parts p+</td><td>VF+VR</td></tr>
 +
<tr><td>8/18 parts p-</td><td>VF+VR</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>PCR (Steps)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr>
 +
<tr><td>pre</td><td>94℃</td><td>2min</td><td>1</td></tr>
 +
<tr><td>de</td><td>94℃</td><td>30sec</td><td>30</td></tr>
 +
<tr><td>an</td><td>55℃</td><td>30sec</td><td>30</td></tr>
 +
<tr><td>ex</td><td>68℃</td><td>1min</td><td>30</td></tr>
 +
<tr><td>F.elong</td><td>4℃</td><td>7min</td><td>1</td></tr>
 +
<tr><td>F.hold</td><td>4℃</td><td>-</td><td>1</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>Liquid Culture</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Name</th><th>medium</th></tr>
 +
<tr><td>strain</td><td>Medium/ml</td></tr>
 +
<tr><td>8/20 transformation RBS</td><td>PG(AMP) /6</td></tr>
 +
<tr><td>8/20 dilution INP7</td><td>PG(CP) /6</td></tr>
 +
<tr><td>8/17 transformation 3c5, RFP</td><td>PG(CP) /6</td></tr>
 +
<tr><td>8/20 transformation p+ [1]</td><td>PG(AMP) /6</td></tr>
 +
<tr><td>8/20 transformation p- [1]</td><td>PG(AMP) /6</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0821" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/21</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kb ladder /1.5</td><td></td></tr>
 +
<tr><td>2</td><td>8/21 cloning PCR scfv[1] /2</td><td></td></tr>
 +
<tr><td>3</td><td>8/21 cloning PCR scfv[2] /2</td><td></td></tr>
 +
<tr><td>4</td><td>nega /2</td><td></td></tr>
 +
<tr><td>5</td><td>8/21 colony PCR p+ [1] /2</td><td></td></tr>
 +
<tr><td>6</td><td>8/21 colony PCR p+ [2] /2</td><td></td></tr>
 +
<tr><td>7</td><td>8/21 colony PCR p+ [3] /2</td><td></td></tr>
 +
<tr><td>8</td><td>8/21 colony PCR p- [1] /2</td><td></td></tr>
 +
<tr><td>9</td><td>8/21 colony PCR p- [2] /2</td><td></td></tr>
 +
<tr><td>10</td><td>8/21 colony PCR p- [3] /2</td><td></td></tr>
 +
<tr><td>11</td><td>8/21 colony PCR parts p+ /2</td><td></td></tr>
 +
<tr><td>12</td><td>8/21 colony PCR parts p- /2</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/9/9d/T--Kyoto--8_21_No34_Electrophoresis_Kaneko_05_20_05_13_01.jpg">
 +
</div>
 +
<p class="keln_note">[img35]<br>2, 3, 4 cloning PCR failed.<br>1 forgot to put ladder<br>5, 7, 8, 9 strong band<br>6 weak<br>10 failed<br>P+[1] and p-[1] -> liquid culture</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0824" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/24</h3></span>
 +
<span class="keln_exp"><h4>Ligation</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>sample/&micro;l</th><th>MilliQ (&micro;l)</th><th>Buffer /&micro;l</th><th>Ligase(&micro;l)</th><th>Total(&micro;l)</th></tr>
 +
<tr><td>8/19 mutation PCR scfv /5</td><td>3.5</td><td>1</td><td>0.5</td><td>10</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0824" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/24</h3></span>
 +
<span class="keln_exp"><h4>Liquid Culture</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Name</th><th>medium</th></tr>
 +
<tr><td>8/20 transformation m.scfv colonyA /6</td><td>PG(AMP)</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0824" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/24</h3></span>
 +
<span class="keln_exp"><h4>Miniprep</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>DNA</th><th>Concentration/(&micro;g/ml)</th><th>260/280</th><th>260/230</th></tr>
 +
<tr><td>8/20 Liquid culture RBS</td><td>124.5</td><td>1.65</td><td>1.02</td></tr>
 +
<tr><td>8/20 Liquid culture INP</td><td>147.8</td><td>1.66</td><td>0.98</td></tr>
 +
<tr><td>8/20 Liquid culture 3c5.RFP</td><td>234.8</td><td>1.79</td><td>1.62</td></tr>
 +
<tr><td>8/20 Liquid culture P+[1]</td><td>40.3</td><td>1.78</td><td>1.60</td></tr>
 +
<tr><td>8/20 Liquid culture P-[1]</td><td>56.7</td><td>1.80</td><td>2.05</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Iguchi -->
 +
<div class="keln_container">
 +
<a name="0825" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/25</h3></span>
 +
<span class="keln_exp"><h4>Miniprep</h4></span>
 +
<span class="keln_researcher">Li, Uchino, Notsu, Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>DNA</th><th>Concentration/(&micro;g/ml)</th><th>260/280</th><th>260/230</th></tr>
 +
<tr><td>8/24 LIquid Culture m.scfv colonyA</td><td>-</td><td>-</td><td>-</td></tr>
 +
<tr><td>8/24 LIquid Culture m.scfv colonyB</td><td>-</td><td>-</td><td>-</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0825" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/25</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher"></span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kb ladder /1.5</td><td></td></tr>
 +
<tr><td>2</td><td>8/24 miniprep p+(J61002) /2</td><td></td></tr>
 +
<tr><td>3</td><td>8/24 miniprep p-(J61002) /2</td><td></td></tr>
 +
<tr><td>4</td><td>8/24 miniprep RFP (3c5) /2</td><td></td></tr>
 +
<tr><td>5</td><td>8/24 miniprep INP (1c3) /2</td><td></td></tr>
 +
<tr><td>6</td><td>8/24 miniprep RBS (1A2) /2</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/f/fd/T--Kyoto--8_25_No38_Electrophoresis_Kaneko_05_20_05_22_35.jpg">
 +
</div>
 +
<p class="keln_note">[img38]</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0825" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/25</h3></span>
 +
<span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span>
 +
<span class="keln_researcher">Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>Sample</th><th>DNA/(&micro;l)</th><th>EcoR1/(&micro;l)</th><th>Xba1/(&micro;l)</th><th>Spe1/(&micro;l)</th><th>Pst1/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>BSA/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td></td><td>p+/24.8</td><td></td><td></td><td>1</td><td>1</td><td>10xH /4</td><td></td><td>9.2</td><td>40</td></tr>
 +
<tr><td></td><td>IINP /6.8</td><td></td><td>1</td><td></td><td>1</td><td>10xM /4</td><td></td><td>27.2</td><td>40</td></tr>
 +
<tr><td></td><td>p- /17.6</td><td></td><td></td><td>1</td><td>1</td><td>10xH /4</td><td></td><td>16.4</td><td>40</td></tr>
 +
<tr><td></td><td>RBS /8.0</td><td></td><td></td><td>1</td><td>1</td><td>10xH /4</td><td></td><td>26</td><td>40</td></tr>
 +
<tr><td></td><td>RFP /4.3</td><td>1</td><td></td><td></td><td>1</td><td>10xH /4</td><td></td><td>29.7</td><td>40</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0825" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/25</h3></span>
 +
<span class="keln_exp"><h4>Gel Extraction</h4></span>
 +
<span class="keln_researcher">Uchino, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(&micro;l)</th></tr>
 +
<tr><td>1</td><td>1kb ladder </td><td>6</td></tr>
 +
<tr><td>2, 3</td><td>8/25 digestion p+</td><td>24 each</td></tr>
 +
<tr><td>4, 5</td><td>8/25 digestion p- </td><td>24 each</td></tr>
 +
<tr><td>6, 7</td><td>8/25 digestion RFP </td><td>24 each</td></tr>
 +
<tr><td>8, 9</td><td>8/25 digestion INP </td><td>24 each</td></tr>
 +
<tr><td>10, 11</td><td>8/25 digestion RBS </td><td>24 each</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/7/77/T--Kyoto--8_25_No40_Gel_Extraction_Kaneko_05_20_05_28_41.JPG">
 +
</div>
 +
<p class="keln_note">[img40]</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0825" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/25</h3></span>
 +
<span class="keln_exp"><h4>Actvation check of Xba and Pst</h4></span>
 +
<span class="keln_researcher">Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>INP(&micro;l)</th><th>Xba(&micro;l)</th><th>Pst(&micro;l)</th><th>10xM(&micro;l)</th><th>BSA(&micro;l)</th><th>MilliQ(&micro;l)</th><th>Total(&micro;l)</th></tr>
 +
<tr><td>0.68</td><td>0.1</td><td>0.1</td><td>1</td><td>0.2</td><td>7.92</td><td>10</td></tr>
 +
<tr><td>0.68</td><td>0.1</td><td>-</td><td>1</td><td>0.2</td><td>8.02</td><td>10</td></tr>
 +
<tr><td>0.68</td><td>-</td><td>0.1</td><td>1</td><td>0.2</td><td>8.02</td><td>10</td></tr>
 +
<tr><td>0.68</td><td>-</td><td>-</td><td>1</td><td>0.2</td><td>8.12</td><td>10</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0825" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/25</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kb ladder /3</td><td></td></tr>
 +
<tr><td>2</td><td>[1] (inp xp cut) /10</td><td></td></tr>
 +
<tr><td>3</td><td>[2] (inp x cut) /10</td><td></td></tr>
 +
<tr><td>4</td><td>[3] (inp p cut) /10</td><td></td></tr>
 +
<tr><td>5</td><td>[4] (inp no cut) /10</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/4/46/T--Kyoto--8_25_No41_2_Electrophoresis_Kaneko_05_20_05_34_47.jpg">
 +
</div>
 +
<p class="keln_note">[img42]</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0826" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/26</h3></span>
 +
<span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span>
 +
<span class="keln_researcher">Uchino, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Sample</th><th>DNA/(&micro;l)</th><th>EcoR1/(&micro;l)</th><th>Xba1/(&micro;l)</th><th>Spe1/(&micro;l)</th><th>Pst1/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>BSA/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td></td><td>8/24 miniprep INP 1c3 /0.68</td><td>-</td><td>1.0</td><td></td><td></td><td></td><td>0.2</td><td>7.12</td><td>10</td></tr>
 +
<tr><td></td><td>8/15 miniprep RFP psb1c3 /1.3</td><td>-</td><td>1.0</td><td></td><td></td><td></td><td>0.2</td><td>6.5</td><td>10</td></tr>
 +
<tr><td></td><td>8/24 miniprep INP 1c3 /0.68</td><td>0.1</td><td>1.0</td><td></td><td></td><td></td><td>0.2</td><td>7.02</td><td>10</td></tr>
 +
<tr><td></td><td>8/15 miniprep RFP psb1c3 /1.3</td><td>0.1</td><td>1.0</td><td></td><td></td><td></td><td>0.2</td><td>6.4</td><td>10</td></tr>
 +
<tr><td></td><td>8/24 miniprep INP 1c3/ 0.68</td><td>0.1</td><td>-</td><td></td><td></td><td></td><td>0.2</td><td>8.02</td><td>10</td></tr>
 +
<tr><td></td><td>8/15 miniprep RFP psb1c3 /1.3</td><td>0.1</td><td>-</td><td></td><td></td><td></td><td>0.2</td><td>7.4</td><td>10</td></tr>
 +
<tr><td></td><td>8/24 miniprep INP 1c3 /0.68</td><td>-</td><td>-</td><td></td><td></td><td></td><td>0.2</td><td>8.12</td><td>10</td></tr>
 +
<tr><td></td><td>8/15 miniprep RFP psb1c3 /1.3</td><td>-</td><td>-</td><td></td><td></td><td></td><td>0.2</td><td>7.5</td><td>10</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0826" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/26</h3></span>
 +
<span class="keln_exp"><h4>PCR (Target)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Templates/(&micro;l)</th><th>Primer1/(&micro;l)</th><th>Primer2/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Any Other/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td>scfv from MK</td><td>c.scfv fw/0.75</td><td>c.scfv rv/0.75</td><td>2x KAPA Hifi /12.5</td><td>11</td><td></td><td>25</td></tr>
 +
<tr><td>none</td><td>c.scfv fw/0.75</td><td>c.scfv rv/0.75</td><td>2x KAPA Hifi /5</td><td>4.4</td><td></td><td>10</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0826" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/26</h3></span>
 +
<span class="keln_exp"><h4>Activation Check of Xba</h4></span>
 +
<span class="keln_researcher">Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kb ladder/2</td><td></td></tr>
 +
<tr><td>2</td><td>[8] RFP/10</td><td></td></tr>
 +
<tr><td>3</td><td>[6] RFP EcoRI/10</td><td></td></tr>
 +
<tr><td>4</td><td>[2] RFP XbaI/10</td><td></td></tr>
 +
<tr><td>5</td><td>[4] RFP EcoRI, XbaI /10</td><td></td></tr>
 +
<tr><td>6</td><td>[7] INP /10</td><td></td></tr>
 +
<tr><td>7</td><td>[5] INP EcoRI /10</td><td></td></tr>
 +
<tr><td>8</td><td>[1] INP XbaI /10</td><td></td></tr>
 +
<tr><td>9</td><td>[3] INP EcoRI, XbaI/10</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/1/17/T--Kyoto--8_26_No45_Electrophoresis_Kaneko_05_20_05_42_54.jpg">
 +
</div>
 +
<p class="keln_note">[img45-1]<br>[img45-2]</p>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Iguchi -->
 +
<div class="keln_container">
 +
<a name="0827" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/27</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>2</td><td>1kb ladder</td><td>2</td></tr>
 +
<tr><td>3</td><td>8/25 PCR scfv</td><td>5</td></tr>
 +
<tr><td>4</td><td>8/25 PCR none</td><td>5</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/f/fc/T--Kyoto--8_27_No46_Electrophoresis_Iguchi_10_17_06_08_50.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Iguchi -->
 +
<div class="keln_container">
 +
<a name="0827" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/27</h3></span>
 +
<span class="keln_exp"><h4>PCR (Target)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Templates/(&micro;l)</th><th>Primer1/(&micro;l)</th><th>Primer2/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Any Other/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td>s.BAN</td><td>BAN.Fw/ 0.75</td><td>BAN.Rv/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr>
 +
<tr><td>s.BAN</td><td>BAN.Fw/ 0.75</td><td>BAN.Rv/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr>
 +
<tr><td>s.BAN</td><td>BAN.Fw/ 0.75</td><td>BAN.Histag/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr>
 +
<tr><td>scfv</td><td>scfv.Fw/ 0.75</td><td>scfv.Rv/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr>
 +
<tr><td>8/24 miniprep INP</td><td>INP.Fw/ 0.75</td><td>INP.Rv/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr>
 +
<tr><td>8/24 miniprep INP</td><td>INP.Fw/ 0.75</td><td>INP.Rv.Histag/ 0.75</td><td></td><td>11</td><td>2xKAPA HiFi/ 12.5</td><td>25</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Iguchi -->
 +
<div class="keln_container">
 +
<a name="0827" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>8/27</h3></span>
 +
<span class="keln_exp"><h4>PCR (Steps)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr>
 +
<tr><td>Predenature</td><td>95</td><td>3min</td><td>1</td></tr>
 +
<tr><td>Denature</td><td>98</td><td>20sec</td><td>25</td></tr>
 +
<tr><td>Annealing</td><td>65</td><td>15sec</td><td>25</td></tr>
 +
<tr><td>Extension</td><td>72</td><td>30sec</td><td>25</td></tr>
 +
<tr><td>Final Elogation</td><td>72</td><td>5min</td><td>1</td></tr>
 +
<tr><td>Final Holding</td><td>4</td><td>-</td><td>1</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Kaneko -->
 +
<div class="keln_container">
 +
<a name="0908" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/8</h3></span>
 +
<span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span>
 +
<span class="keln_researcher">Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Sample</th><th>DNA/(&micro;l)</th><th>EcoR1/(&micro;l)</th><th>Xba1/(&micro;l)</th><th>Spe1/(&micro;l)</th><th>Pst1/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>BSA/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td></td><td>[1] 8/15 miniprep 1c3 RFP /14</td><td>0.5</td><td></td><td>0.5</td><td>-</td><td>10xH /3</td><td></td><td>12</td><td>30</td></tr>
 +
<tr><td></td><td>[2] 8/24 miniprep 3c5 RFP /8.5</td><td>0.5</td><td></td><td>-</td><td>0.5</td><td>10xH /3</td><td></td><td>17.5</td><td>30</td></tr>
 +
<tr><td></td><td>[3] 8/24 miniprep 3c5 RFP /8.5</td><td>0.5</td><td></td><td>0.5</td><td>-</td><td>10xH /3</td><td></td><td>17.5</td><td>30</td></tr>
 +
<tr><td></td><td>[4] 8/24 miniprep BBa_J61002 p- /24</td><td>0.5</td><td></td><td>-</td><td>0.5</td><td>10xH /3</td><td></td><td>2</td><td>30</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/4/4c/T--Kyoto--9_8_No50_Restriction_Enzyme_Digestion_Kaneko_05_20_05_48_28.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto,Iguchi -->
 +
<div class="keln_container">
 +
<a name="0909" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/9</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr>
 +
<tr><td>1</td><td>100bp ladder 9&micro;L</td></tr>
 +
<tr><td>2</td><td>8/24 miniprep p- EPcut 30&micro;L</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto,Iguchi -->
 +
<div class="keln_container">
 +
<a name="0909" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/9</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Sukegawa, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr>
 +
<tr><td>1</td><td>1kbp ladder 9&micro;L</td></tr>
 +
<tr><td>2</td><td>8/15 miniprep 1C3RFP EScut 30&micro;L</td></tr>
 +
<tr><td>3</td><td>8/24 miniprep 3C5RFP EPcut 30&micro;L</td></tr>
 +
<tr><td>4</td><td>8/24 miniprep 3C5RFP EScut 30&micro;L</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0914" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/14</h3></span>
 +
<span class="keln_exp"><h4>PCR (Target)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Templates/(&micro;l)</th><th>Primer1/(&micro;l)</th><th>Primer2/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Any Other/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td>8/24 miniprep INP</td><td>INPfw/0.75</td><td>INPRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr>
 +
<tr><td>8/24 miniprep INP</td><td>INPfw/0.75</td><td>INPHisRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr>
 +
<tr><td>BAN</td><td>BANFw/0/75</td><td>BANRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr>
 +
<tr><td>BAN</td><td>BANFw/0/75</td><td>BANHisRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr>
 +
<tr><td>BAN </td><td>BANFw/0/75</td><td>RBSRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr>
 +
<tr><td>scFv fromMk</td><td>scFvFw/0/75</td><td>scFvRv/0/75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr>
 +
<tr><td>scFv fromMk</td><td>scFvHisFw/0.75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi</td><td>11</td><td></td><td>25</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0914" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/14</h3></span>
 +
<span class="keln_exp"><h4>PCR (Steps)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr>
 +
<tr><td>1</td><td>95</td><td>3min</td><td>1</td></tr>
 +
<tr><td>2</td><td>98</td><td>70sec</td><td>25</td></tr>
 +
<tr><td>3</td><td>68</td><td>15sec</td><td>25</td></tr>
 +
<tr><td>4</td><td>72</td><td>30sec</td><td>25</td></tr>
 +
<tr><td>5</td><td>72</td><td>5min</td><td>1</td></tr>
 +
<tr><td>6</td><td>10</td><td>-</td><td>1</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------><!-- Table Generated by KELN Author: Yamamoto,Iguchi -->
 +
<div class="keln_container">
 +
<a name="0914" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/14</h3></span>
 +
<span class="keln_exp"><h4>Gel Extraction</h4></span>
 +
<span class="keln_researcher">Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr>
 +
<tr><td>2</td><td>ladder/6</td></tr>
 +
<tr><td>4</td><td>9/14 PCR1/10</td></tr>
 +
<tr><td>6</td><td>9/14 PCR2/10</td></tr>
 +
<tr><td>8</td><td>9/14 PCR3/10</td></tr>
 +
<tr><td>10</td><td>9/14 PCR4/10</td></tr>
 +
<tr><td>12</td><td>9/14PCR5/10</td></tr>
 +
<tr><td>14</td><td>9/14 PCR6/10</td></tr>
 +
<tr><td>16</td><td>9/14 PCR7/10</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/4/4b/T--Kyoto--9_14_No53_Electrophoresis_Yamamoto_08_23_11_27_01.1.JPG"><img src="https://static.igem.org/mediawiki/2016/7/77/T--Kyoto--9_14_No53_Electrophoresis_Yamamoto_08_23_11_27_01.2.JPG">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0914" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/14</h3></span>
 +
<span class="keln_exp"><h4>PCR (Target)</h4></span>
 +
<span class="keln_researcher">Li</span>
 +
<table class="keln_table">
 +
<tr><th>Templates/(&micro;l)</th><th>Primer1/(&micro;l)</th><th>Primer2/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Any Other/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td>3sBAN/0.15+6scFvfromMK/0.15</td><td>BANFw/0/75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi/12.5</td><td></td><td></td><td>25</td></tr>
 +
<tr><td>4sBAN/0.15+7scFvfromMK/0.15</td><td>BANFw/0/75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi/12.5</td><td></td><td></td><td>25</td></tr>
 +
<tr><td>1INP8/24miniprep/0.15+5sBAN0.15+scFvfromMK/0.15</td><td>BANFw/0/75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi/12.5</td><td></td><td></td><td>25</td></tr>
 +
<tr><td>2INP8/24miniprep/0.15</td><td>BANFw/0/75</td><td>scFvRv/0.75</td><td>2×KAPAHiFi/12.5</td><td></td><td></td><td>25</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto,Iguchi -->
 +
<div class="keln_container">
 +
<a name="0914" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/15</h3></span>
 +
<span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span>
 +
<span class="keln_researcher">Li, Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>Sample</th><th>DNA/(&micro;l)</th><th>EcoR1/(&micro;l)</th><th>Xba1/(&micro;l)</th><th>Spe1/(&micro;l)</th><th>Pst1/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>BSA/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td>3sBAN+6scFvfromMKPCRproduct</td><td>34</td><td>1</td><td></td><td>1</td><td></td><td>4</td><td></td><td></td><td>40</td></tr>
 +
<tr><td>4sBAN+7scFvfromMK PCRproduct</td><td>34</td><td>1</td><td></td><td>1</td><td></td><td>4</td><td></td><td></td><td>40</td></tr>
 +
<tr><td>1INP8/24miniprep+5sBAN+6scFvfromMKPCRproduct</td><td>16</td><td>1</td><td></td><td>1</td><td></td><td>2</td><td></td><td></td><td>20</td></tr>
 +
<tr><td>2INP8/24miniprep+5sBAN+7scFvfromMkPCRproduct</td><td>34</td><td>1</td><td></td><td>1</td><td></td><td>4</td><td></td><td></td><td>40</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0915" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/15</h3></span>
 +
<span class="keln_exp"><h4>Gel Extraction</h4></span>
 +
<span class="keln_researcher">Li, Uchino</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(&micro;l)</th></tr>
 +
<tr><td>1</td><td>1kb ladder</td><td></td></tr>
 +
<tr><td>2</td><td>3sBAN+6scFvfromMkPCRproductEScut</td><td>20</td></tr>
 +
<tr><td>3</td><td>3sBAN+6scFvfromMkPCRproductEScut</td><td>20</td></tr>
 +
<tr><td>4</td><td>4sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr>
 +
<tr><td>5</td><td>4sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr>
 +
<tr><td>6</td><td>1INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr>
 +
<tr><td>7</td><td>2INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr>
 +
<tr><td>8</td><td>2INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut</td><td>20</td></tr>
 +
<tr><td>9</td><td>RFP3C5PCRproduct</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/a/a2/T--Kyoto--9_15_No56_Gel_Extraction_Yamamoto_08_23_11_46_18%2C1.jpg"><img src="https://static.igem.org/mediawiki/2016/5/52/T--Kyoto--9_15_No56_Gel_Extraction_Yamamoto_08_23_11_46_18%2C2.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0916" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/16</h3></span>
 +
<span class="keln_exp"><h4>Colony PCR (2Column)</h4></span>
 +
<span class="keln_researcher">Uchino, Michimori</span>
 +
<table class="keln_table">
 +
<tr><th>Name I</th><th>Name II</th></tr>
 +
<tr><td>9/15 transformation BANscFv 3C5 colony1~16</td><td>VF+VR</td></tr>
 +
<tr><td>9/15 transformation INPscFv 3C5 colony1~16</td><td>VF+VR</td></tr>
 +
<tr><td>9/15 transformation BANHisscFv 3C5 colony1~16</td><td>VF+VR</td></tr>
 +
<tr><td>9/15 transformation INPHisscFv 3C5 colony1~16</td><td>VF+VR</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0916" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/16</h3></span>
 +
<span class="keln_exp"><h4>PCR (Steps)</h4></span>
 +
<span class="keln_researcher">Uchino, Michimori</span>
 +
<table class="keln_table">
 +
<tr><th>Steps</th><th>Temparature</th><th>Time</th><th>Cycle</th></tr>
 +
<tr><td>1</td><td>94</td><td>2</td><td>1</td></tr>
 +
<tr><td>2</td><td>94</td><td>0.5</td><td>25</td></tr>
 +
<tr><td>3</td><td>55</td><td>0.5</td><td>25</td></tr>
 +
<tr><td>4</td><td>68</td><td>1</td><td>25</td></tr>
 +
<tr><td>5</td><td>4</td><td>7</td><td>1</td></tr>
 +
<tr><td>6</td><td>4</td><td>-</td><td>1</td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0916" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/16</h3></span>
 +
<span class="keln_exp"><h4>Gel Extraction</h4></span>
 +
<span class="keln_researcher">Li, Kaneko, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(&micro;l)</th></tr>
 +
<tr><td>1</td><td>1kb ladder</td><td>5</td></tr>
 +
<tr><td>2</td><td>BANscFv3C5 colony 9</td><td>10</td></tr>
 +
<tr><td>3</td><td>BANscFv3C5 colony 10</td><td>10</td></tr>
 +
<tr><td>4</td><td>BANscFv3C5 colony 11</td><td>10</td></tr>
 +
<tr><td>5</td><td>BANscFv3C5 colony 12</td><td>10</td></tr>
 +
<tr><td>6</td><td>BANscFv3C5 colony 13</td><td>10</td></tr>
 +
<tr><td>7</td><td>BANscFv3C5 colony 14</td><td>10</td></tr>
 +
<tr><td>8</td><td>BANscFv3C5 colony 15</td><td>10</td></tr>
 +
<tr><td>9</td><td>BANscFv3C5 colony 16</td><td>10</td></tr>
 +
<tr><td>10</td><td>BANHisscFv3C5 colony 9</td><td>10</td></tr>
 +
<tr><td>11</td><td>BANHisscFv3C5 colony 10</td><td>10</td></tr>
 +
<tr><td>12</td><td>BANHisscFv3C5 colony 11</td><td>10</td></tr>
 +
<tr><td>13</td><td>BANHisscFv3C5 colony 12</td><td>10</td></tr>
 +
<tr><td>14</td><td>BANHisscFv3C5 colony 13</td><td>10</td></tr>
 +
<tr><td>15</td><td>BANHisscFv3C5 colony 14</td><td>10</td></tr>
 +
<tr><td>16</td><td>BANHisscFv3C5 colony 15</td><td>10</td></tr>
 +
<tr><td>17</td><td>BANHisscFv3C5 colony 16</td><td>10</td></tr>
 +
<tr><td>18</td><td>BANscFv3C5 colony 1</td><td>10</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/d/d3/T--Kyoto--9_16_No59_Gel_Extraction_Yamamoto_08_23_11_57_19.1.JPG"><img src="https://static.igem.org/mediawiki/2016/3/34/T--Kyoto--9_16_No59_Gel_Extraction_Yamamoto_08_23_11_57_19.2.JPG"><img src="https://static.igem.org/mediawiki/2016/a/aa/T--Kyoto--9_16_No59_Gel_Extraction_Yamamoto_08_23_11_57_19.3.JPG"><img src="https://static.igem.org/mediawiki/2016/6/67/T--Kyoto--9_16_No59_Gel_Extraction_Yamamoto_08_23_11_57_19.4.JPG">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0916" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/16</h3></span>
 +
<span class="keln_exp"><h4>Gel Extraction</h4></span>
 +
<span class="keln_researcher">Li, Kaneko, Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Product</th><th>Volume/(&micro;l)</th></tr>
 +
<tr><td>1</td><td>1kb ladder</td><td>5</td></tr>
 +
<tr><td>2</td><td>INPscFv3C5 colony 9</td><td>10</td></tr>
 +
<tr><td>3</td><td>INPscFv3C5 colony 10</td><td>10</td></tr>
 +
<tr><td>4</td><td>INPscFv3C5 colony 11</td><td>10</td></tr>
 +
<tr><td>5</td><td>INPscFv3C5 colony 12</td><td>10</td></tr>
 +
<tr><td>6</td><td>INPscFv3C5 colony 13</td><td>10</td></tr>
 +
<tr><td>7</td><td>INPscFv3C5 colony 14</td><td>10</td></tr>
 +
<tr><td>8</td><td>INPscFv3C5 colony 15</td><td>10</td></tr>
 +
<tr><td>9</td><td>INPscFv3C5 colony 16</td><td>10</td></tr>
 +
<tr><td>10</td><td>INPHisscFv3C5 colony 9</td><td>10</td></tr>
 +
<tr><td>11</td><td>INPHisscFv3C5 colony 10</td><td>10</td></tr>
 +
<tr><td>12</td><td>INPHisscFv3C5 colony 11</td><td>10</td></tr>
 +
<tr><td>13</td><td>INPHisscFv3C5 colony 12</td><td>10</td></tr>
 +
<tr><td>14</td><td>INPHisscFv3C5 colony 13</td><td>10</td></tr>
 +
<tr><td>15</td><td>INPHisscFv3C5 colony 14</td><td>10</td></tr>
 +
<tr><td>16</td><td>INPHisscFv3C5 colony 15</td><td>10</td></tr>
 +
<tr><td>17</td><td>INPHisscFv3C5 colony 16</td><td>10</td></tr>
 +
<tr><td>18</td><td>BANscFv3C5 colony 1</td><td>10</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/3/3d/T--Kyoto--9_16_No60_Gel_Extraction_Yamamoto_08_23_11_59_27%2C1.jpg"><img src="https://static.igem.org/mediawiki/2016/8/88/T--Kyoto--9_16_No60_Gel_Extraction_Yamamoto_08_23_11_59_27%2C2.jpg"><img src=""><img src="https://static.igem.org/mediawiki/2016/4/42/T--Kyoto--9_16_No60_Gel_Extraction_Yamamoto_08_23_11_59_27%2C3.jpg"><img src="https://static.igem.org/mediawiki/2016/6/69/T--Kyoto--9_16_No60_Gel_Extraction_Yamamoto_08_23_11_59_27%2C4.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto,Iguchi -->
 +
<div class="keln_container">
 +
<a name="0916" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/17</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Michimori, Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr>
 +
<tr><td>1</td><td>buffer/5</td></tr>
 +
<tr><td>2</td><td>1kb ladder/5</td></tr>
 +
<tr><td>3</td><td>BAN 9 P/4.5</td></tr>
 +
<tr><td>4</td><td>BAN 9 N/4.5</td></tr>
 +
<tr><td>5</td><td>BAN14 P/4.5</td></tr>
 +
<tr><td>6</td><td>BAN14 N/4.5</td></tr>
 +
<tr><td>7</td><td>BANHis14 P/4.5</td></tr>
 +
<tr><td>8</td><td>BANHis14/4.5</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/9/98/T--Kyoto--9_17_No62_Electrophoresis_Yamamoto_08_23_12_42_58.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Iguchi -->
 +
<div class="keln_container">
 +
<a name="0917" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/17</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>sample/(&micro;l)</th><th>Length(bp)</th></tr>
 +
<tr><td>1</td><td>1kbp ladder</td><td></td></tr>
 +
<tr><td>2</td><td>none</td><td></td></tr>
 +
<tr><td>3</td><td>BANHis16 p</td><td></td></tr>
 +
<tr><td>4</td><td>BANHis16 n</td><td></td></tr>
 +
<tr><td>5</td><td>INP 12 p</td><td></td></tr>
 +
<tr><td>6</td><td>INP 14 p</td><td></td></tr>
 +
<tr><td>7</td><td>INP 12 n</td><td></td></tr>
 +
<tr><td>8</td><td>INP 14 n</td><td></td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/9/9b/T--Kyoto--9_17_No63_Electrophoresis_Iguchi_10_17_06_39_35.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto,Iguchi -->
 +
<div class="keln_container">
 +
<a name="0917" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/17</h3></span>
 +
<span class="keln_exp"><h4>Electrophoresis</h4></span>
 +
<span class="keln_researcher">Kaneko</span>
 +
<table class="keln_table">
 +
<tr><th>Lane</th><th>Restriction Enzyme Digestion Products</th></tr>
 +
<tr><td>1</td><td>-</td></tr>
 +
<tr><td>2</td><td>-</td></tr>
 +
<tr><td>3</td><td>1kbladder/5</td></tr>
 +
<tr><td>4</td><td>INPHis9 P/4.5</td></tr>
 +
<tr><td>5</td><td>INPHis9N/4.5</td></tr>
 +
<tr><td>6</td><td>INPHis12P/4.5</td></tr>
 +
<tr><td>7</td><td>INPHis12N/4.5</td></tr>
 +
<tr><td>8</td><td>INP14 N/4.5</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/b/b8/T--Kyoto--9_17_No64_Electrophoresis_Yamamoto_08_23_01_05_58.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0917" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/17</h3></span>
 +
<span class="keln_exp"><h4>Restriction Enzyme Digestion</h4></span>
 +
<span class="keln_researcher">Uchino, Michimori</span>
 +
<table class="keln_table">
 +
<tr><th>Sample</th><th>DNA/(&micro;l)</th><th>EcoR1/(&micro;l)</th><th>Xba1/(&micro;l)</th><th>Spe1/(&micro;l)</th><th>Pst1/(&micro;l)</th><th>Buffer/(&micro;l)</th><th>BSA/(&micro;l)</th><th>MilliQ/(&micro;l)</th><th>Total/(&micro;l)</th></tr>
 +
<tr><td>BAN9 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr>
 +
<tr><td>BAN9 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr>
 +
<tr><td>BAN14 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr>
 +
<tr><td>BAN14 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr>
 +
<tr><td>BANHis14 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr>
 +
<tr><td>BANHis 14 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr>
 +
<tr><td>BANHis 16 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr>
 +
<tr><td>BANHis16 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr>
 +
<tr><td>INP12 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr>
 +
<tr><td>INP12 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr>
 +
<tr><td>INP14 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr>
 +
<tr><td>INP 14 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr>
 +
<tr><td>INP 9 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr>
 +
<tr><td>INP9 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr>
 +
<tr><td>INPHis12 </td><td>2</td><td>0.5</td><td></td><td></td><td>0.5</td><td>10×H/1</td><td></td><td>6</td><td>10</td></tr>
 +
<tr><td>INPHis12 </td><td>1</td><td>0</td><td></td><td></td><td>0</td><td>10×H/1</td><td></td><td>8</td><td>10</td></tr>
 +
</table>
 +
<img src="https://static.igem.org/mediawiki/2016/8/8a/T--Kyoto--9_17_No65_Restriction_Enzyme_Digestion_Yamamoto_08_23_01_13_52.jpg">
 +
</div>
 +
<!------------ Table END ------------>
 +
<!-- Table Generated by KELN Author: Yamamoto -->
 +
<div class="keln_container">
 +
<a name="0917" class = "kyoto-jump"></a>
 +
<span class="keln_date"><h3>9/17</h3></span>
 +
<span class="keln_exp"><h4>Miniprep</h4></span>
 +
<span class="keln_researcher">Notsu</span>
 +
<table class="keln_table">
 +
<tr><th>DNA</th><th>Concentration/(&micro;g/ml)</th><th>260/280</th><th>260/230</th></tr>
 +
<tr><td>9/16 liquid culture BANscFv12</td><td></td><td></td><td></td></tr>
 +
<tr><td>9/16 liquid culture BANscFv14</td><td></td><td></td><td></td></tr>
 +
<tr><td>9/16 liquid culture BANHisscFv12</td><td></td><td></td><td></td></tr>
 +
<tr><td>9/16 liquid culture BANHisscFv14</td><td></td><td></td><td></td></tr>
 +
<tr><td>9/16 liquid culture INPHisscFv12</td><td></td><td></td><td></td></tr>
 +
<tr><td>9/16 liquid culture INPHisscFv14</td><td></td><td></td><td></td></tr>
 +
<tr><td>9/16 liquid culture INPHisscFv10</td><td></td><td></td><td></td></tr>
 +
<tr><td>9/16 liquid culture BANscFv</td><td></td><td></td><td></td></tr>
 +
</table>
 +
</div>
 +
<!------------ Table END ------------>
  
 
     </div>
 
     </div>

Latest revision as of 17:57, 19 October 2016

August
1
2 3 4 5 6 7 8
9 10 11 12 13 14 15
16 17 18 19 20 21 22
23 24 25 26 27 28 29
30 31
September
1 2 3 4 5
6 7 8 9 10 11 12
13 14 15 16 17 18 19
20 21 22 23 24 25 26
27 28 29 30

8/14

Transformation

Li, Uchino, Kaneko
Sample NameSample Volume (µl)Competent Cells/(µl)Medium
RFP 0.5ng/µl2DH5α /20LB(CP)
RFP 5ng/µl2DH5α /20LB(CP)
RFP 10ng/µl2DH5α /20LB(CP)
RFP 20ng/µl2DH5α /20LB(CP)
RFP 50ng/µl2DH5α /20LB(CP)

8/14

Gel Extraction

Li, Uchino, Kaneko
LaneRestriction Enzyme Digestion ProductVolume/(µl)
110/1 PQ(3)about 23.5
21kb ladder6
310/1 PQ(3)about 23.5
410/1 PQ(3)about 24

Total volume of samples of lane 1~3 was 71.5µl and it was divided into three.

8/14

Transformation

Li, Uchino, Kaneko
Sample NameSample VolumeCompetent Cells/(µl)Medium
3C510µlDH5α 20µlLB(CP)
P+10µlDH5α 20µlLB(CP)
P-10µlDH5α 20µlLB(CP)
RBS10µlDH5α 20µlLB(CP)

8/14

Liquid Culture

Li, Uchino, Iguchi, Kaneko
Namemedium
8/13 transformation RFP 20ng/µl colony1LB(CP)
8/13 transformation part RFP colony1LB(CP)
8/13 transformation part RFP colony2LB(CP)
8/13 transformation part RFP colony3LB(CP)
8/13 transformation part RFP colony4LB(CP)
8/13 transformation part RFP colony5LB(CP)
8/13 transformation part RFP colony6LB(CP)
8/13 transformation part RFP colony7LB(CP)
8/13 transformation part RFP colony8LB(CP)
8/13 transformation part RFP colony9LB(CP)
8/13 transformation part RFP colony10LB(CP)
8/13 transformation part RFP colony11LB(CP)

8/15

Miniprep

Li, Uchino, Notsu, Kaneko, Watanabe
DNAConcentration/(µg/ml)260/280260/230
RFP1 /2µl82.51.401.22
RFP2 /4µl142.51.692.05
RFP3 /4µl501.551.71
RFP4 /4µl57.51.641.88
RFP6 /4µl98.751.711.40
RFP(20) /4µl76.251.671.32

8/15

Electrophoresis

Notsu, Kaneko
LaneRestriction Enzyme Digestion Products
11kb ladder 3µl
2RFP1 10µl
3RFP2 10µl
4RFP3 10µl
5RFP4 10µl
6RFP6 10µl
7RFP(20) 10µl
8PCR1 5µl
9PCR2 5µl
10PCR3 5µl
11PCR4 5µl
12 PCR5 5 µl
131kb ladder 3µl

8/15

Restriction Enzyme Digestion

Uchino, Notsu, Kaneko
SampleDNA/(µl)EcoR1/(µl)Xba1/(µl)Spe1/(µl)Pst1/(µl)Buffer/(µl)BSA/(µl)MilliQ/(µl)Total/(µl)
8/15Miniprep PSB1C3-RFP12410015(H)01950
8/15Miniprep PSB1C3-RFP21410015(H)02950
8/15Miniprep PSB1C3-RFP34010015(H)0350
8/15Miniprep PSB1C3-RFP43510015(H)0850
8/15Miniprep PSB1C3-RFP62010015(H)02350

8/15

colony PCR

Uchino, Notsu, Kaneko, Watanabe
colony Primers
8/14 transformation pSB1C3-RFP1 VF+VR
8/14 transformation pSB1C3-RFP2 VF+VR
8/14 transformation pSB1C3-RFP3 VF+VR
8/14 transformation pSB1C3-RFP4 VF+VR
8/14 transformation pSB1C3-RFP1 VF+VR

8/15

PCR (Steps)

Uchino, Notsu, Kaneko, Watanabe
StepsTemparatureTimeCycle
Pre Denature94℃2min1
Denature94℃30sec30
Annealing55℃30sec30
Extension68℃1min30
Final elongation4℃7min1
Final Holding4℃--

8/16

Gel Extraction

Li, Iguchi, Notsu, Kaneko, Watanabe
LaneRestriction Enzyme Digestion ProductVolume/(µl)
11kb ladder10
2blank
38/15 digestion pSB1C3-RFP 155
48/15 digestion pSB1C3-RFP 255
58/15 digestion pSB1C3-RFP 336
68/15 digestion pSB1C3-RFP 436
78/15 digestion pSB1C3-RFP 636

8/16

Electrophoresis

Li, Iguchi, Notsu, Kaneko, Watanabe
Lanesample/(µl)Length(bp)
18/16 Gel Extraction RFP1 /1
28/16 Gel Extraction RFP2 /1
38/16 Gel Extraction RFP3 /1
48/16 Gel Extraction RFP4 /1
5blank
68/16 pSB1C3-vector /1
78/16 pSB1C3-vector /1
81kladder

8/16

Ligation

Li, Iguchi, Notsu, Kaneko, Watanabe
Vector DNA /(µl)insert DNA /(µl)ligase /(µl)10×buffer /(µl)MilliQ /(µl)Total /(µl)
pSB1C3 EPcut /1RFP /40.5139.5
pSB1C3 EPcut /1RFP /20.5159.5
pSB1C3 EPcut /1RFP /40.5139.5
pSB1C3 EPcut /1RFP /40.5139.5
pSB1C3 EPcut /1-0.5179.5

8/17

Liquid Culture

Li
Namemedium
8/16 transformation pSB3C5 RFP1LB(CP) /6
8/16 transformation pSB3C5 RFP2LB(CP) /6
8/16 transformation pSB3C5 RFP1LB(CP) /6

8/17

Transformation

Li
Sample NameSample Volume (µl)Competent Cells/(µl)Medium
pSB1C3 P+2DH5α /20LB
pSB1C3 P-2DH5α /20LB
pSB1C3 RBS2DH5α /20LB
pSB3C5 RFP2DH5α /20LB
8/16 ligation pSB1C3 RFP12DH5αLB

8/17

Electrophoresis

Iguchi
Lanesample/(µl)Length(bp)
11kbp ladder /3
2blank
3pSB1C3-RFP(ligate)1 /2
4pSB1C3-RFP(ligate)2 /2
5pSB1C3-RFP(ligate)3 /2
6pSB1C3-RFP(ligate)4 /3
7Vector (Ctrl) /5

8/18

Liquid Culture

Li, Iguchi, Notsu
Namemedium
INP [1] BBa_K811005LB(CP) / 6ml
INP [2] BBa_K811005LB(CP) / 6ml
INP [3] BBa_K811005LB(CP) / 6ml
scfv04 [1] BBa_K875004LB(CP) / 6ml
scfv04 [2] BBa_K875004LB(CP) / 6ml
scfv04 [3] BBa_K875004LB(CP) / 6ml
scfv06 [1] BBa__K875006LB(CP) / 6ml
scfv06 [2] BBa_K875006LB(CP) / 6ml
scfv06 [3] BBa_K875006LB(CP) / 6ml

8/18

Miniprep

Li, Iguchi, Notsu
DNAConcentration/(µg/ml)260/280260/230
8/17 Liquid Culture 3C5 [1] / 5µl771.691.45
8/17 Liquid Culture 3C5 [2] / 2µl401.671.17
8/17 Liquid Culture 3C5 [3] / 2µl153.753.70

8/18

Electrophoresis

Li
Lanesample/(µl)Length(bp)
11kb ladder /1-
2[1] psb3c5(8/18 miniprep) /4.23807
3[2] psb3c5(8/18 miniprep) /4.23807
4[1'] psb3c5(8/18 miniprep) /4.23807
5[2'] psb3c5(8/18 miniprep) /4.23807
6[3'] psb3c5(8/18 miniprep) /4.23807

[img18]

8/18

Restriction Enzyme Digestion

Li, Iguchi, Notsu
SampleDNA/(µl)EcoR1/(µl)Xba1/(µl)Spe1/(µl)Pst1/(µl)Buffer/(µl)BSA/(µl)MilliQ/(µl)Total/(µl)
psb3c5(8/18miniprep) [1'], [2'], [3'] mixed / 501.01.05.656.6

8/19

Transformation

Li, Iguchi, Notsu
Sample NameSample Volume (µl)Competent Cells/(µl)Medium
BBa_ J61002 p+2DH5a /20LB(Amp)
BBa_J61002 p-2DH5a /20LB(Amp)
BBa_1A2 RBS2DH5a /20LB(Amp)

Failed due to deactivation of Amp

8/19

MutationPCR

Templates /µlPrimer /µlPrimer STAR Max Premix /µlMilliQ /µlTotal(µl)
scfv plasmid /0.1m.scfv FW /1, m.scfvRV/12522.950
scfv plasmid (nega) /0.1054.910
(nega) /0m.scfv FW/0.2, m.scfvRV/0.254.610

---30cycle---
98℃ 10''
55℃ 15''
72℃ 20''
----------------
4℃ holding

8/19

Electrophoresis

Notsu
Lanesample/(µl)Length(bp)
11kb ladder/2-
2scfv plasmid +primer(m.scfv FW, m.scfv RV) mutation PCR product /53600
3scfv plasmid mutation PCR product /5-
4primer(m.scfv FW, m.scfv RV) mutation PCR product /5-
5psb3c5 EPcut product /52600(backborn), 1200(inseert)

[img22]

8/19

Concentration

Li, Notsu
SampleOD600Bacterial cells /ml
INP [1] K8110050.6435.14x10^8
scfv06 K8750060.6345.07x10^8
scfv04 K8750040.6184.94x10^8

1 OD 600 equals to 8x10^8 cells /ml

8/19

Miniprep

Li, Notsu
DNAConcentration/(µg/ml)260/280260/230
scfv 04[1] K875004 /3µl561.631.45
scfv 04[2] K875004 /3µl561.631.45
scfv 04[3] K875004 /3µl561.631.45
scfv 06[1] K875006 /3µl561.631.45
scfv 06[2] K875006 /3µl561.631.45
scfv 06[3] K875006 /3µl561.631.45
INP [1] K811005 /3µl561.631.45
INP [2] K811005 /3µl561.631.45
INP [3] K811005 /3µl561.631.45

There was a problem with an instrument

8/20

Transformation

Li, Uchino
Sample NameSample Volume (µl)Competent Cells/(µl)Medium
8/19 mutation PCR scfv plasmid (nega)1DH5a/ 20LB(CP)

8/19 mutation PCR:
1µl extraction of scfv plasmid (nega)/10µl was folded 300 times.

8/20

Transformation

Li, Uchino
Sample NameSample Volume (µl)Competent Cells/(µl)Medium
8/19 mutation PCR scfv plasmid1 [note:1]DH5a/20LB(AMP)
8/19 mutation PCR scfv plasmid (nega)1 [note:2]DH5a/20LB(AMP)
BBa_J61002 p+1DH5a/20LB(AMP)
BBa_J61002 p-1DH5a/20LB(AMP)
BBa_1A2 RBS1DH5a/20LB(AMP)

[note:1]
8/19 mutation PCR:
1µl extraction of scfv plasmid (nega)/50µl was folded 300 times.
[note:2]
8/19 mutation PCR:
1µl extraction of scfv plasmid (nega)/10µl was folded 300 times.

8/20

Electrophoresis

Li
Lanesample/(µl)Length(bp)
11kb ladder /1.5
29/19 miniprep scfv04 [1]
39/19 miniprep scfv04 [2]
49/19 miniprep scfv04 [3]
59/19 miniprep scfv06 [1]
69/19 miniprep scfv06 [2]
79/19 miniprep scfv06 [3]
89/19 miniprep INP [1]
99/19 miniprep INP [2]
109/19 miniprep INP [3]

[img26]

8/21

Colony PCR

Uchino
ColonyPrimers
8/20 transformation RBSVF+VR
8/20 transformation p+VF+VR
8/20 transformation p-VF+VR
8/20 dilution INPVF+VR

8/21

PCR (Steps)

Uchino
StepsTemparatureTimeCycle
Pre94℃2min1
De94℃30 sec30
An55℃30 sec30
Ex68℃1min30
Final E4℃7min1
Final Hold4℃--

Autoclaved distrilled water /23µl
2xQuick taq /25µl
10 pmol/µl primer (VF) /1µl
10 pmol/µl primer (VR) /1µl
Template DNA /0µl
Total 50µl

8/21

Electrophoresis

Li
Lanesample/(µl)Length(bp)
11kb ladder /2
28/21 colony PCR RBS /all
38/21 colony PCR p+ /all
48/21 colony PCR p- /all
58/21 colony PCR INP /all
68/21 colony PCR Nega /all

[img29-1]
weak band except INP -> retry
colony PCR and Electrophoresis were conducted under the same condition.
[img29-2]
RBS and INP success.
P+ and P- failed -> retry.

8/21

PCR (Steps)

Li
StepsTemparatureTimeCycle
Predenature95℃3min1
Denature98℃20sec25
Annealing70℃15sec25
Extension72℃30sec25
Final Elongation72℃5min1
Final Holding4℃-1

8/21

PCR (Target)

Li
Templates/(µl)Primer1/(µl)Primer2/(µl)Buffer/(µl)MilliQ/(µl)Any Other/(µl)Total/(µl)
scfv 8/20 transformationcscfv.f /0.75cscfv.r /0.752x KAPA Hifi /12.51125
- (nega)cscfv.f /0.3cscfv.f /0.32x KAPA Hifi /54.410

8/21

Colony PCR

Li
ColonyPrimers
8/20 transformation p+ [1]VF+VR
8/20 transformation p+ [2]VF+VR
8/20 transformation p+ [3]VF+VR
8/20 transformation p- [1]VF+VR
8/20 transformation p- [2]VF+VR
8/20 transformation p- [3]VF+VR
8/18 parts p+VF+VR
8/18 parts p-VF+VR

8/21

PCR (Steps)

Li
StepsTemparatureTimeCycle
pre94℃2min1
de94℃30sec30
an55℃30sec30
ex68℃1min30
F.elong4℃7min1
F.hold4℃-1

8/21

Liquid Culture

Li
Namemedium
strainMedium/ml
8/20 transformation RBSPG(AMP) /6
8/20 dilution INP7PG(CP) /6
8/17 transformation 3c5, RFPPG(CP) /6
8/20 transformation p+ [1]PG(AMP) /6
8/20 transformation p- [1]PG(AMP) /6

8/21

Electrophoresis

Li
Lanesample/(µl)Length(bp)
11kb ladder /1.5
28/21 cloning PCR scfv[1] /2
38/21 cloning PCR scfv[2] /2
4nega /2
58/21 colony PCR p+ [1] /2
68/21 colony PCR p+ [2] /2
78/21 colony PCR p+ [3] /2
88/21 colony PCR p- [1] /2
98/21 colony PCR p- [2] /2
108/21 colony PCR p- [3] /2
118/21 colony PCR parts p+ /2
128/21 colony PCR parts p- /2

[img35]
2, 3, 4 cloning PCR failed.
1 forgot to put ladder
5, 7, 8, 9 strong band
6 weak
10 failed
P+[1] and p-[1] -> liquid culture

8/24

Ligation

Li
sample/µlMilliQ (µl)Buffer /µlLigase(µl)Total(µl)
8/19 mutation PCR scfv /53.510.510

8/24

Liquid Culture

Li
Namemedium
8/20 transformation m.scfv colonyA /6PG(AMP)

8/24

Miniprep

Li
DNAConcentration/(µg/ml)260/280260/230
8/20 Liquid culture RBS124.51.651.02
8/20 Liquid culture INP147.81.660.98
8/20 Liquid culture 3c5.RFP234.81.791.62
8/20 Liquid culture P+[1]40.31.781.60
8/20 Liquid culture P-[1]56.71.802.05

8/25

Miniprep

Li, Uchino, Notsu, Kaneko
DNAConcentration/(µg/ml)260/280260/230
8/24 LIquid Culture m.scfv colonyA---
8/24 LIquid Culture m.scfv colonyB---

8/25

Electrophoresis

Lanesample/(µl)Length(bp)
11kb ladder /1.5
28/24 miniprep p+(J61002) /2
38/24 miniprep p-(J61002) /2
48/24 miniprep RFP (3c5) /2
58/24 miniprep INP (1c3) /2
68/24 miniprep RBS (1A2) /2

[img38]

8/25

Restriction Enzyme Digestion

Uchino
SampleDNA/(µl)EcoR1/(µl)Xba1/(µl)Spe1/(µl)Pst1/(µl)Buffer/(µl)BSA/(µl)MilliQ/(µl)Total/(µl)
p+/24.81110xH /49.240
IINP /6.81110xM /427.240
p- /17.61110xH /416.440
RBS /8.01110xH /42640
RFP /4.31110xH /429.740

8/25

Gel Extraction

Uchino, Notsu
LaneRestriction Enzyme Digestion ProductVolume/(µl)
11kb ladder 6
2, 38/25 digestion p+24 each
4, 58/25 digestion p- 24 each
6, 78/25 digestion RFP 24 each
8, 98/25 digestion INP 24 each
10, 118/25 digestion RBS 24 each

[img40]

8/25

Actvation check of Xba and Pst

Uchino
INP(µl)Xba(µl)Pst(µl)10xM(µl)BSA(µl)MilliQ(µl)Total(µl)
0.680.10.110.27.9210
0.680.1-10.28.0210
0.68-0.110.28.0210
0.68--10.28.1210

8/25

Electrophoresis

Notsu
Lanesample/(µl)Length(bp)
11kb ladder /3
2[1] (inp xp cut) /10
3[2] (inp x cut) /10
4[3] (inp p cut) /10
5[4] (inp no cut) /10

[img42]

8/26

Restriction Enzyme Digestion

Uchino, Notsu
SampleDNA/(µl)EcoR1/(µl)Xba1/(µl)Spe1/(µl)Pst1/(µl)Buffer/(µl)BSA/(µl)MilliQ/(µl)Total/(µl)
8/24 miniprep INP 1c3 /0.68-1.00.27.1210
8/15 miniprep RFP psb1c3 /1.3-1.00.26.510
8/24 miniprep INP 1c3 /0.680.11.00.27.0210
8/15 miniprep RFP psb1c3 /1.30.11.00.26.410
8/24 miniprep INP 1c3/ 0.680.1-0.28.0210
8/15 miniprep RFP psb1c3 /1.30.1-0.27.410
8/24 miniprep INP 1c3 /0.68--0.28.1210
8/15 miniprep RFP psb1c3 /1.3--0.27.510

8/26

PCR (Target)

Li
Templates/(µl)Primer1/(µl)Primer2/(µl)Buffer/(µl)MilliQ/(µl)Any Other/(µl)Total/(µl)
scfv from MKc.scfv fw/0.75c.scfv rv/0.752x KAPA Hifi /12.51125
nonec.scfv fw/0.75c.scfv rv/0.752x KAPA Hifi /54.410

8/26

Activation Check of Xba

Uchino
Lanesample/(µl)Length(bp)
11kb ladder/2
2[8] RFP/10
3[6] RFP EcoRI/10
4[2] RFP XbaI/10
5[4] RFP EcoRI, XbaI /10
6[7] INP /10
7[5] INP EcoRI /10
8[1] INP XbaI /10
9[3] INP EcoRI, XbaI/10

[img45-1]
[img45-2]

8/27

Electrophoresis

Li
Lanesample/(µl)Length(bp)
21kb ladder2
38/25 PCR scfv5
48/25 PCR none5

8/27

PCR (Target)

Li
Templates/(µl)Primer1/(µl)Primer2/(µl)Buffer/(µl)MilliQ/(µl)Any Other/(µl)Total/(µl)
s.BANBAN.Fw/ 0.75BAN.Rv/ 0.75112xKAPA HiFi/ 12.525
s.BANBAN.Fw/ 0.75BAN.Rv/ 0.75112xKAPA HiFi/ 12.525
s.BANBAN.Fw/ 0.75BAN.Histag/ 0.75112xKAPA HiFi/ 12.525
scfvscfv.Fw/ 0.75scfv.Rv/ 0.75112xKAPA HiFi/ 12.525
8/24 miniprep INPINP.Fw/ 0.75INP.Rv/ 0.75112xKAPA HiFi/ 12.525
8/24 miniprep INPINP.Fw/ 0.75INP.Rv.Histag/ 0.75112xKAPA HiFi/ 12.525

8/27

PCR (Steps)

Li
StepsTemparatureTimeCycle
Predenature953min1
Denature9820sec25
Annealing6515sec25
Extension7230sec25
Final Elogation725min1
Final Holding4-1

9/8

Restriction Enzyme Digestion

Notsu
SampleDNA/(µl)EcoR1/(µl)Xba1/(µl)Spe1/(µl)Pst1/(µl)Buffer/(µl)BSA/(µl)MilliQ/(µl)Total/(µl)
[1] 8/15 miniprep 1c3 RFP /140.50.5-10xH /31230
[2] 8/24 miniprep 3c5 RFP /8.50.5-0.510xH /317.530
[3] 8/24 miniprep 3c5 RFP /8.50.50.5-10xH /317.530
[4] 8/24 miniprep BBa_J61002 p- /240.5-0.510xH /3230

9/9

Electrophoresis

Notsu
LaneRestriction Enzyme Digestion Products
1100bp ladder 9µL
28/24 miniprep p- EPcut 30µL

9/9

Electrophoresis

Sukegawa, Notsu
LaneRestriction Enzyme Digestion Products
11kbp ladder 9µL
28/15 miniprep 1C3RFP EScut 30µL
38/24 miniprep 3C5RFP EPcut 30µL
48/24 miniprep 3C5RFP EScut 30µL

9/14

PCR (Target)

Li
Templates/(µl)Primer1/(µl)Primer2/(µl)Buffer/(µl)MilliQ/(µl)Any Other/(µl)Total/(µl)
8/24 miniprep INPINPfw/0.75INPRv/0.752×KAPAHiFi1125
8/24 miniprep INPINPfw/0.75INPHisRv/0.752×KAPAHiFi1125
BANBANFw/0/75BANRv/0.752×KAPAHiFi1125
BANBANFw/0/75BANHisRv/0.752×KAPAHiFi1125
BAN BANFw/0/75RBSRv/0.752×KAPAHiFi1125
scFv fromMkscFvFw/0/75scFvRv/0/752×KAPAHiFi1125
scFv fromMkscFvHisFw/0.75scFvRv/0.752×KAPAHiFi1125

9/14

PCR (Steps)

Li
StepsTemparatureTimeCycle
1953min
29870sec25
36815sec25
47230sec25
5725min1
610-1

9/14

Gel Extraction

Kaneko
LaneRestriction Enzyme Digestion Products
2ladder/6
49/14 PCR1/10
69/14 PCR2/10
89/14 PCR3/10
109/14 PCR4/10
129/14PCR5/10
149/14 PCR6/10
169/14 PCR7/10

9/14

PCR (Target)

Li
Templates/(µl)Primer1/(µl)Primer2/(µl)Buffer/(µl)MilliQ/(µl)Any Other/(µl)Total/(µl)
3sBAN/0.15+6scFvfromMK/0.15BANFw/0/75scFvRv/0.752×KAPAHiFi/12.525
4sBAN/0.15+7scFvfromMK/0.15BANFw/0/75scFvRv/0.752×KAPAHiFi/12.525
1INP8/24miniprep/0.15+5sBAN0.15+scFvfromMK/0.15BANFw/0/75scFvRv/0.752×KAPAHiFi/12.525
2INP8/24miniprep/0.15BANFw/0/75scFvRv/0.752×KAPAHiFi/12.525

9/15

Restriction Enzyme Digestion

Li, Uchino
SampleDNA/(µl)EcoR1/(µl)Xba1/(µl)Spe1/(µl)Pst1/(µl)Buffer/(µl)BSA/(µl)MilliQ/(µl)Total/(µl)
3sBAN+6scFvfromMKPCRproduct3411440
4sBAN+7scFvfromMK PCRproduct3411440
1INP8/24miniprep+5sBAN+6scFvfromMKPCRproduct1611220
2INP8/24miniprep+5sBAN+7scFvfromMkPCRproduct3411440

9/15

Gel Extraction

Li, Uchino
LaneRestriction Enzyme Digestion ProductVolume/(µl)
11kb ladder
23sBAN+6scFvfromMkPCRproductEScut20
33sBAN+6scFvfromMkPCRproductEScut20
44sBAN+7scFvfromMkPCRproductEScut20
54sBAN+7scFvfromMkPCRproductEScut20
61INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut20
72INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut20
82INP8/24miniprep+5sBAN+7scFvfromMkPCRproductEScut20
9RFP3C5PCRproduct

9/16

Colony PCR (2Column)

Uchino, Michimori
Name IName II
9/15 transformation BANscFv 3C5 colony1~16VF+VR
9/15 transformation INPscFv 3C5 colony1~16VF+VR
9/15 transformation BANHisscFv 3C5 colony1~16VF+VR
9/15 transformation INPHisscFv 3C5 colony1~16VF+VR

9/16

PCR (Steps)

Uchino, Michimori
StepsTemparatureTimeCycle
19421
2940.525
3550.525
468125
5471
64-1

9/16

Gel Extraction

Li, Kaneko, Notsu
LaneRestriction Enzyme Digestion ProductVolume/(µl)
11kb ladder5
2BANscFv3C5 colony 910
3BANscFv3C5 colony 1010
4BANscFv3C5 colony 1110
5BANscFv3C5 colony 1210
6BANscFv3C5 colony 1310
7BANscFv3C5 colony 1410
8BANscFv3C5 colony 1510
9BANscFv3C5 colony 1610
10BANHisscFv3C5 colony 910
11BANHisscFv3C5 colony 1010
12BANHisscFv3C5 colony 1110
13BANHisscFv3C5 colony 1210
14BANHisscFv3C5 colony 1310
15BANHisscFv3C5 colony 1410
16BANHisscFv3C5 colony 1510
17BANHisscFv3C5 colony 1610
18BANscFv3C5 colony 110

9/16

Gel Extraction

Li, Kaneko, Notsu
LaneRestriction Enzyme Digestion ProductVolume/(µl)
11kb ladder5
2INPscFv3C5 colony 910
3INPscFv3C5 colony 1010
4INPscFv3C5 colony 1110
5INPscFv3C5 colony 1210
6INPscFv3C5 colony 1310
7INPscFv3C5 colony 1410
8INPscFv3C5 colony 1510
9INPscFv3C5 colony 1610
10INPHisscFv3C5 colony 910
11INPHisscFv3C5 colony 1010
12INPHisscFv3C5 colony 1110
13INPHisscFv3C5 colony 1210
14INPHisscFv3C5 colony 1310
15INPHisscFv3C5 colony 1410
16INPHisscFv3C5 colony 1510
17INPHisscFv3C5 colony 1610
18BANscFv3C5 colony 110

9/17

Electrophoresis

Michimori, Kaneko
LaneRestriction Enzyme Digestion Products
1buffer/5
21kb ladder/5
3BAN 9 P/4.5
4BAN 9 N/4.5
5BAN14 P/4.5
6BAN14 N/4.5
7BANHis14 P/4.5
8BANHis14/4.5

9/17

Electrophoresis

Kaneko
Lanesample/(µl)Length(bp)
11kbp ladder
2none
3BANHis16 p
4BANHis16 n
5INP 12 p
6INP 14 p
7INP 12 n
8INP 14 n

9/17

Electrophoresis

Kaneko
LaneRestriction Enzyme Digestion Products
1-
2-
31kbladder/5
4INPHis9 P/4.5
5INPHis9N/4.5
6INPHis12P/4.5
7INPHis12N/4.5
8INP14 N/4.5

9/17

Restriction Enzyme Digestion

Uchino, Michimori
SampleDNA/(µl)EcoR1/(µl)Xba1/(µl)Spe1/(µl)Pst1/(µl)Buffer/(µl)BSA/(µl)MilliQ/(µl)Total/(µl)
BAN9 20.50.510×H/1610
BAN9 10010×H/1810
BAN14 20.50.510×H/1610
BAN14 10010×H/1810
BANHis14 20.50.510×H/1610
BANHis 14 10010×H/1810
BANHis 16 20.50.510×H/1610
BANHis16 10010×H/1810
INP12 20.50.510×H/1610
INP12 10010×H/1810
INP14 20.50.510×H/1610
INP 14 10010×H/1810
INP 9 20.50.510×H/1610
INP9 10010×H/1810
INPHis12 20.50.510×H/1610
INPHis12 10010×H/1810

9/17

Miniprep

Notsu
DNAConcentration/(µg/ml)260/280260/230
9/16 liquid culture BANscFv12
9/16 liquid culture BANscFv14
9/16 liquid culture BANHisscFv12
9/16 liquid culture BANHisscFv14
9/16 liquid culture INPHisscFv12
9/16 liquid culture INPHisscFv14
9/16 liquid culture INPHisscFv10
9/16 liquid culture BANscFv