Common name Species Phenotypic trait Gene Name NCBI CDS Accession number Protein Bibliography DOI
Apple Malus domestica delayed ripening MdACS3 AB243060 1-aminocyclopropane-1-carboxylate synthase Null Mutation of the MdACS3 Gene, Coding for a Ripening-Specific 1-Aminocyclopropane-1-Carboxylate Synthase, Leads to Long Shelf Life in Apple Fruit 10.1104/pp.109.135822
Tomato Solanum lycopersicum delayed ripening Solanum lycopersicum 1-aminocyclopropane-1-carboxylate synthase (ACS6), mRNA NM_001247235.2 1-aminocyclopropane-1-carboxylate synthase Delayed ripening and improved fruit processing quality in tomato by RNAi-mediated silencing of three homologs of 1-aminopropane-1-carboxylate synthase gene 10.1016/j.jplph.2013.02.003
Strawberry Fragaria × ananassa Flavonoid biosynthesis Fragaria chiloensis transcription factor (MYB1) mRNA, complete cds  GQ867222.1 A R2R3 MYB transcription factor http://www.ncbi.nlm.nih.gov/pubmed/23522932 10.1016/j.phytochem.2013.02.016.
Tomato Solanum lycopersicum Increase of carotenoid and flavonoid levels Solanum lycopersicum deetiolated1 homolog (Det1), mRNA  NM_001247219.2 light-mediated development protein DET1 http://www.ncbi.nlm.nih.gov/pubmed/20435899/ 10.1038/nbt1108
Orange tree Citrus sinensis induced flowering Citrus sinensis terminal flower (TFL), mRNA NM_001288919.1 terminal flower (TFL) Isolation and Characterization of a TERMINAL FLOWER Homolog and Its Correlation with Juvenility in Citrus 10.1104/pp.103.036178
Maize Zea mays semi-dwarf; more grain yield Zea mays (LOC107521947), mRNA NM_001321686.1 GA3 oxidase The Maize DWARF1 Encodes a Gibberellin 3-Oxidase and Is Dual Localized to the Nucleus and Cytosol1Maize Zea mays semi-dwarf; more grain yield Zea mays (LOC107521947), mRNA NM_001321686.1 GA3 oxidase The Maize DWARF1 Encodes a Gibberellin 3-Oxidase and Is Dual Localized to the Nucleus and Cytosol1[ 10.1104/pp.114.247486
Rice Oryza sativa Resitance to Magnaporthe oryzae, the causal fungus of rice blast disease OsERF922 AP2/ERF type transcription factor Liu, D., Chen, X., Liu, J., Ye, J. and Guo, Z. (2012). The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. Journal of Experimental Botany, 63(10), pp.3899-3911. 10.1093/jxb/ers079
Rice Oryza sativa Tolerance to salt stress OsERF922 AP2/ERF type transcription factor Liu, D., Chen, X., Liu, J., Ye, J. and Guo, Z. (2012). The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. Journal of Experimental Botany, 63(10), pp.3899-3911. 10.1093/jxb/ers079
Rice Oryza sativa Drought Tolerance RACK1 RACK1 LI, D., LIU, H., YANG, Y., ZHEN, P. and LIANG, J. (2009). Down-Regulated Expression of RACK1 Gene by RNA Interference Enhances Drought Tolerance in Rice. Rice Science, 16(1), pp.14-20. 10.1016/S1672-6308(08)60051-7
Rice Oryza sativa Drought Tolerance PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase SINAT5 (LOC4344172), mRNA. XM_015789296 E3 ubiquitin-protein ligase SINAT5 Ning, Y., Jantasuriyarat, C., Zhao, Q., Zhang, H., Chen, S., Liu, J., Liu, L., Tang, S., Park, C., Wang, X., Liu, X., Dai, L., Xie, Q. and Wang, G. (2011). The SINA E3 Ligase OsDIS1 Negatively Regulates Drought Response in Rice. PLANT PHYSIOLOGY, 157(1), pp.242-255.  10.1104/pp.111.180893
coffee Coffea arabica decaffeinated plants Coffea arabica CaMXMT1 mRNA for 7-methylxanthine N-methyltransferase, complete cds. AB048794 RecName: Full=Monomethylxanthine methyltransferase 1; Short=CaMXMT1; AltName: Full=Theobromine synthase 1. Ogita, S., Uefuji, H., Yamaguchi, Y., Koizumi, N. and Sano, H. (2003). RNA interference: Producing decaffeinated coffee plants. Nature, 423(6942), pp.823-823. 10.1038/423823a
cotton Gossypium hirsutum  increased stearic acid content G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase. X95988 delta 9 stearoyl-cotton Gossypium hirsutum  increased stearic acid content G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase. X95988 delta 9 stearoyl-[ desaturase [Gossypium hirsutum]. Liu, Q. (2002). High-Stearic and High-Oleic Cottonseed Oils Produced by Hairpin RNA-Mediated Post-Transcriptional Gene Silencing. PLANT PHYSIOLOGY, 129(4), pp.1732-1743. 10.1104/pp.001933
cotton Gossypium hirsutum increased oleic acid content Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA. NM_001327381 delta(12)-fatty-acid desaturase FAD2-like cotton Gossypium hirsutum increased oleic acid content Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA. NM_001327381 delta(12)-fatty-acid desaturase FAD2-like [. Liu, Q. (2002). High-Stearic and High-Oleic Cottonseed Oils Produced by Hairpin RNA-Mediated Post-Transcriptional Gene Silencing. PLANT PHYSIOLOGY, 129(4), pp.1732-1743. 10.1104/pp.001933
corn Zea mays higher levels of amylose Zea mays amylose extender 1 (ae1), mRNA. NM_001111846 1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor corn Zea mays higher levels of amylose Zea mays amylose extender 1 (ae1), mRNA. NM_001111846 1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor [. Guan, (2011). Production of high-amylose maize lines using RNA interference in sbe2a. Afr. J. Biotechnol., 10(68). 10.5897/AJB11.943
onion  Allium roylei reduced levels of tear-inducing lachrymatory factor Allium roylei lachrymatory factor synthase (LFS) gene, partial cds. HQ738919 lachrymatory factor synthase, partial onion  Allium roylei reduced levels of tear-inducing lachrymatory factor Allium roylei lachrymatory factor synthase (LFS) gene, partial cds. HQ738919 lachrymatory factor synthase, partial [. Eady, C., Kamoi, T., Kato, M., Porter, N., Davis, S., Shaw, M., Kamoi, A. and Imai, S. (2008). Silencing Onion Lachrymatory Factor Synthase Causes a Significant Change in the Sulfur Secondary Metabolite Profile. PLANT PHYSIOLOGY, 147(4), pp.2096-2106. 10.1104/pp.108.123273
tomato  Solanum lycopersicum Parthenocarpic Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds. HQ008773 chalcone synthase tomato  Solanum lycopersicum Parthenocarpic Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds. HQ008773 chalcone synthase [. Schijlen, E., de Vos, C., Martens, S., Jonker, H., Rosin, F., Molthoff, J., Tikunov, Y., Angenent, G., van Tunen, A. and Bovy, A. (2007). RNA Interference Silencing of Chalcone Synthase, the First Step in the Flavonoid Biosynthesis Pathway, Leads to Parthenocarpic Tomato Fruits. PLANT PHYSIOLOGY, 144(3), pp.1520-1530. 10.1104/pp.107.100305