Difference between revisions of "Team:Valencia UPV/Software"

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<section><div class="container-fluid"><div class="row"><div class="col-md-2 col-sm-3"><div class="side-nav margin-bottom-60 margin-top-30"><div class="side-nav-head"><button class="fa fa-bars"></button><h4>Index</h4></div><ul class="list-group list-group-bordered list-group-noicon uppercase"></ul></div></div><div class="col-md-10 col-sm-9">Common name Species Phenotypic trait Gene Name NCBI CDS Accession number Protein Bibliography DOI<br>Apple Malus domestica delayed ripening MdACS3 AB243060 1-aminocyclopropane-1-carboxylate synthase Null Mutation of the MdACS3 Gene, Coding for a Ripening-Specific 1-Aminocyclopropane-1-Carboxylate Synthase, Leads to Long Shelf Life in Apple Fruit 10.1104/pp.109.135822<br>Tomato Solanum lycopersicum delayed ripening Solanum lycopersicum 1-aminocyclopropane-1-carboxylate synthase (ACS6), mRNA NM_001247235.2 1-aminocyclopropane-1-carboxylate synthase Delayed ripening and improved fruit processing quality in tomato by RNAi-mediated silencing of three homologs of 1-aminopropane-1-carboxylate synthase gene 10.1016/j.jplph.2013.02.003<br>Strawberry Fragaria × ananassa Flavonoid biosynthesis Fragaria chiloensis transcription factor (MYB1) mRNA, complete cds  GQ867222.1 A R2R3 MYB transcription factor http://www.ncbi.nlm.nih.gov/pubmed/23522932 10.1016/j.phytochem.2013.02.016.<br>Tomato Solanum lycopersicum Increase of carotenoid and flavonoid levels Solanum lycopersicum deetiolated1 homolog (Det1), mRNA  NM_001247219.2 light-mediated development protein DET1 http://www.ncbi.nlm.nih.gov/pubmed/20435899/ 10.1038/nbt1108<br>Orange tree Citrus sinensis induced flowering Citrus sinensis terminal flower (TFL), mRNA NM_001288919.1 terminal flower (TFL) Isolation and Characterization of a TERMINAL FLOWER Homolog and Its Correlation with Juvenility in Citrus 10.1104/pp.103.036178<br>Maize Zea mays semi-dwarf; more grain yield Zea mays (LOC107521947), mRNA NM_001321686.1 GA3 oxidase The Maize DWARF1 Encodes a Gibberellin 3-Oxidase and Is Dual Localized to the Nucleus and Cytosol1<a href="e Zea mays semi-dwarf; more grain yield Zea mays (LOC107521947), mRNA NM_001321686.1 GA3 oxidase The Maize DWARF1 Encodes a Gibberellin 3-Oxidase and Is Dual Localized to the Nucleus and Cytosol1[W">Maize Zea mays semi-dwarf; more grain yield Zea mays (LOC107521947), mRNA NM_001321686.1 GA3 oxidase The Maize DWARF1 Encodes a Gibberellin 3-Oxidase and Is Dual Localized to the Nucleus and Cytosol1[</a> 10.1104/pp.114.247486<br>Rice Oryza sativa Resitance to Magnaporthe oryzae, the causal fungus of rice blast disease OsERF922 AP2/ERF type transcription factor Liu, D., Chen, X., Liu, J., Ye, J. and Guo, Z. (2012). The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. Journal of Experimental Botany, 63(10), pp.3899-3911. 10.1093/jxb/ers079<br>Rice Oryza sativa Tolerance to salt stress OsERF922 AP2/ERF type transcription factor Liu, D., Chen, X., Liu, J., Ye, J. and Guo, Z. (2012). The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. Journal of Experimental Botany, 63(10), pp.3899-3911. 10.1093/jxb/ers079<br>Rice Oryza sativa Drought Tolerance RACK1 RACK1 LI, D., LIU, H., YANG, Y., ZHEN, P. and LIANG, J. (2009). Down-Regulated Expression of RACK1 Gene by RNA Interference Enhances Drought Tolerance in Rice. Rice Science, 16(1), pp.14-20. 10.1016/S1672-6308(08)60051-7<br>Rice Oryza sativa Drought Tolerance PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase SINAT5 (LOC4344172), mRNA. XM_015789296 E3 ubiquitin-protein ligase SINAT5 Ning, Y., Jantasuriyarat, C., Zhao, Q., Zhang, H., Chen, S., Liu, J., Liu, L., Tang, S., Park, C., Wang, X., Liu, X., Dai, L., Xie, Q. and Wang, G. (2011). The SINA E3 Ligase OsDIS1 Negatively Regulates Drought Response in Rice. PLANT PHYSIOLOGY, 157(1), pp.242-255.  10.1104/pp.111.180893<br>coffee Coffea arabica decaffeinated plants Coffea arabica CaMXMT1 mRNA for 7-methylxanthine N-methyltransferase, complete cds. AB048794 RecName: Full=Monomethylxanthine methyltransferase 1; Short=CaMXMT1; AltName: Full=Theobromine synthase 1. Ogita, S., Uefuji, H., Yamaguchi, Y., Koizumi, N. and Sano, H. (2003). RNA interference: Producing decaffeinated coffee plants. Nature, 423(6942), pp.823-823. 10.1038/423823a<br>cotton Gossypium hirsutum  increased stearic acid content G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase. X95988 delta 9 stearoyl-<a href="on Gossypium hirsutum  increased stearic acid content G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase. X95988 delta 9 stearoyl-[acyl-carrier protein">cotton Gossypium hirsutum  increased stearic acid content G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase. X95988 delta 9 stearoyl-[</a> desaturase [Gossypium hirsutum]. Liu, Q. (2002). High-Stearic and High-Oleic Cottonseed Oils Produced by Hairpin RNA-Mediated Post-Transcriptional Gene Silencing. PLANT PHYSIOLOGY, 129(4), pp.1732-1743. 10.1104/pp.001933<br>cotton Gossypium hirsutum increased oleic acid content Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA. NM_001327381 delta(12)-fatty-acid desaturase FAD2-like <a href="on Gossypium hirsutum increased oleic acid content Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA. NM_001327381 delta(12)-fatty-acid desaturase FAD2-like [Gossypium hirsutum">cotton Gossypium hirsutum increased oleic acid content Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA. NM_001327381 delta(12)-fatty-acid desaturase FAD2-like [</a>. Liu, Q. (2002). High-Stearic and High-Oleic Cottonseed Oils Produced by Hairpin RNA-Mediated Post-Transcriptional Gene Silencing. PLANT PHYSIOLOGY, 129(4), pp.1732-1743. 10.1104/pp.001933<br>corn Zea mays higher levels of amylose Zea mays amylose extender 1 (ae1), mRNA. NM_001111846 1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor <a href=" Zea mays higher levels of amylose Zea mays amylose extender 1 (ae1), mRNA. NM_001111846 1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor [Zea mays">corn Zea mays higher levels of amylose Zea mays amylose extender 1 (ae1), mRNA. NM_001111846 1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor [</a>. Guan, (2011). Production of high-amylose maize lines using RNA interference in sbe2a. Afr. J. Biotechnol., 10(68). 10.5897/AJB11.943<br>onion  Allium roylei reduced levels of tear-inducing lachrymatory factor Allium roylei lachrymatory factor synthase (LFS) gene, partial cds. HQ738919 lachrymatory factor synthase, partial <a href="n  Allium roylei reduced levels of tear-inducing lachrymatory factor Allium roylei lachrymatory factor synthase (LFS) gene, partial cds. HQ738919 lachrymatory factor synthase, partial [Allium roylei">onion  Allium roylei reduced levels of tear-inducing lachrymatory factor Allium roylei lachrymatory factor synthase (LFS) gene, partial cds. HQ738919 lachrymatory factor synthase, partial [</a>. Eady, C., Kamoi, T., Kato, M., Porter, N., Davis, S., Shaw, M., Kamoi, A. and Imai, S. (2008). Silencing Onion Lachrymatory Factor Synthase Causes a Significant Change in the Sulfur Secondary Metabolite Profile. PLANT PHYSIOLOGY, 147(4), pp.2096-2106. 10.1104/pp.108.123273<br>tomato  Solanum lycopersicum Parthenocarpic Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds. HQ008773 chalcone synthase <a href="to  Solanum lycopersicum Parthenocarpic Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds. HQ008773 chalcone synthase [Solanum lycopersicum">tomato  Solanum lycopersicum Parthenocarpic Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds. HQ008773 chalcone synthase [</a>. Schijlen, E., de Vos, C., Martens, S., Jonker, H., Rosin, F., Molthoff, J., Tikunov, Y., Angenent, G., van Tunen, A. and Bovy, A. (2007). RNA Interference Silencing of Chalcone Synthase, the First Step in the Flavonoid Biosynthesis Pathway, Leads to Parthenocarpic Tomato Fruits. PLANT PHYSIOLOGY, 144(3), pp.1520-1530. 10.1104/pp.107.100305<br><br></table></div><p></p></div></div></div></section>
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<section><div class="container-fluid"><div class="row"><div class="col-md-2 col-sm-3"><div class="side-nav margin-bottom-60 margin-top-30"><div class="side-nav-head"><button class="fa fa-bars"></button><h4>Index</h4></div><ul class="list-group list-group-bordered list-group-noicon uppercase"></ul></div></div><div class="col-md-10 col-sm-9"><br>Common name Species Phenotypic trait Gene Name NCBI CDS Accession number Protein<br>Apple Malus domestica delayed ripening MdACS3 AB243060 1-aminocyclopropane-1-carboxylate synthase<br>Tomato Solanum lycopersicum delayed ripening Solanum lycopersicum 1-aminocyclopropane-1-carboxylate synthase (ACS6), mRNA NM_001247235.2 1-aminocyclopropane-1-carboxylate synthase<br>Strawberry Fragaria × ananassa Flavonoid biosynthesis Fragaria chiloensis transcription factor (MYB1) mRNA, complete cds  GQ867222.1 A R2R3 MYB transcription factor<br>Tomato Solanum lycopersicum Increase of carotenoid and flavonoid levels Solanum lycopersicum deetiolated1 homolog (Det1), mRNA  NM_001247219.2 light-mediated development protein DET1<br>Orange tree Citrus sinensis induced flowering Citrus sinensis terminal flower (TFL), mRNA NM_001288919.1 terminal flower (TFL)<br>Maize Zea mays semi-dwarf; more grain yield Zea mays (LOC107521947), mRNA NM_001321686.1 GA3 oxidase<br>Rice Oryza sativa Resitance to Magnaporthe oryzae, the causal fungus of rice blast disease OsERF922 AP2/ERF type transcription factor<br>Rice Oryza sativa Tolerance to salt stress OsERF922 AP2/ERF type transcription factor<br>Rice Oryza sativa Drought Tolerance RACK1 RACK1<br>Rice Oryza sativa Drought Tolerance PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase SINAT5 (LOC4344172), mRNA. XM_015789296 E3 ubiquitin-protein ligase SINAT5<br>coffee Coffea arabica decaffeinated plants Coffea arabica CaMXMT1 mRNA for 7-methylxanthine N-methyltransferase, complete cds. AB048794 RecName: Full=Monomethylxanthine methyltransferase 1; Short=CaMXMT1; AltName: Full=Theobromine synthase 1.<br>cotton Gossypium hirsutum  increased stearic acid content G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase. X95988 delta 9 stearoyl-(acyl-carrier protein desaturase) (Gossypium hirsutum).<br>cotton Gossypium hirsutum increased oleic acid content Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA. NM_001327381 delta(12)-fatty-acid desaturase FAD2-like (Gossypium hirsutum).<br>corn Zea mays higher levels of amylose Zea mays amylose extender 1 (ae1), mRNA. NM_001111846 1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor (Zea mays).<br>onion  Allium roylei reduced levels of tear-inducing lachrymatory factor Allium roylei lachrymatory factor synthase (LFS) gene, partial cds. HQ738919 lachrymatory factor synthase, partial (Allium roylei).<br>tomato  Solanum lycopersicum Parthenocarpic Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds. HQ008773 chalcone synthase (Solanum lycopersicum).<br><br></table></div><p></p></div></div></div></section>
  
  

Revision as of 22:49, 19 October 2016

Index


    Common name Species Phenotypic trait Gene Name NCBI CDS Accession number Protein
    Apple Malus domestica delayed ripening MdACS3 AB243060 1-aminocyclopropane-1-carboxylate synthase
    Tomato Solanum lycopersicum delayed ripening Solanum lycopersicum 1-aminocyclopropane-1-carboxylate synthase (ACS6), mRNA NM_001247235.2 1-aminocyclopropane-1-carboxylate synthase
    Strawberry Fragaria × ananassa Flavonoid biosynthesis Fragaria chiloensis transcription factor (MYB1) mRNA, complete cds  GQ867222.1 A R2R3 MYB transcription factor
    Tomato Solanum lycopersicum Increase of carotenoid and flavonoid levels Solanum lycopersicum deetiolated1 homolog (Det1), mRNA  NM_001247219.2 light-mediated development protein DET1
    Orange tree Citrus sinensis induced flowering Citrus sinensis terminal flower (TFL), mRNA NM_001288919.1 terminal flower (TFL)
    Maize Zea mays semi-dwarf; more grain yield Zea mays (LOC107521947), mRNA NM_001321686.1 GA3 oxidase
    Rice Oryza sativa Resitance to Magnaporthe oryzae, the causal fungus of rice blast disease OsERF922 AP2/ERF type transcription factor
    Rice Oryza sativa Tolerance to salt stress OsERF922 AP2/ERF type transcription factor
    Rice Oryza sativa Drought Tolerance RACK1 RACK1
    Rice Oryza sativa Drought Tolerance PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase SINAT5 (LOC4344172), mRNA. XM_015789296 E3 ubiquitin-protein ligase SINAT5
    coffee Coffea arabica decaffeinated plants Coffea arabica CaMXMT1 mRNA for 7-methylxanthine N-methyltransferase, complete cds. AB048794 RecName: Full=Monomethylxanthine methyltransferase 1; Short=CaMXMT1; AltName: Full=Theobromine synthase 1.
    cotton Gossypium hirsutum  increased stearic acid content G.hinsutum mRNA for stearoyl-acyl-carrier protein desaturase. X95988 delta 9 stearoyl-(acyl-carrier protein desaturase) (Gossypium hirsutum).
    cotton Gossypium hirsutum increased oleic acid content Gossypium hirsutum delta(12)-fatty-acid desaturase FAD2-like (LOC107934594), mRNA. NM_001327381 delta(12)-fatty-acid desaturase FAD2-like (Gossypium hirsutum).
    corn Zea mays higher levels of amylose Zea mays amylose extender 1 (ae1), mRNA. NM_001111846 1,4-α-glucan-branching enzyme 2, chloroplastic/amyloplastic precursor (Zea mays).
    onion  Allium roylei reduced levels of tear-inducing lachrymatory factor Allium roylei lachrymatory factor synthase (LFS) gene, partial cds. HQ738919 lachrymatory factor synthase, partial (Allium roylei).
    tomato  Solanum lycopersicum Parthenocarpic Solanum lycopersicum chalcone synthase (CHS2) mRNA, complete cds. HQ008773 chalcone synthase (Solanum lycopersicum).

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