Difference between revisions of "Team:Tianjin/Note/6803"

Line 1: Line 1:
 
{{:Team:Tianjin/Templates/MaterialTheme|}}
 
{{:Team:Tianjin/Templates/MaterialTheme|}}
  
{{:Team:Tianjin/Templates/AddCSS|:Team:Tianjin/Note/6803/camarts.css}}
+
{{:Team:Tianjin/Templates/AddCSS|:Team:Tianjin/Note/Consortium/camarts.css}}
 
{{:Team:Tianjin/Templates/AddCSS|:Team:Tianjin/Experiment/css/font.css}}
 
{{:Team:Tianjin/Templates/AddCSS|:Team:Tianjin/Experiment/css/font.css}}
  
Line 43: Line 43:
 
              
 
              
 
   <div id="Topp"></div>
 
   <div id="Topp"></div>
 
 
 
<div id="page" class="hfeed" >
 
<div id="page" class="hfeed" >
 
      
 
      
 
<div id="page-heading" class="relative">
 
<div id="page-heading" class="relative">
 
      
 
      
 +
   
 
     <header id="main-header" role="banner">
 
     <header id="main-header" role="banner">
<style>
+
    <style>
.note-content,.note-content2,.note-content3,.note-content4,.note-content5,.note-content6,.note-content7,.note-content li,.note-content2 li,.note-content3 li,.note-content4 li,.note-content5 li,.note-content6 li,.note-content7 li{
+
.note-content,.note-content2,.note-content3,.note-content4,.note-content5,.note-content6,.note-content7,.note-content8,.note-content9,.note-content10,.note-content li,.note-content2 li,.note-content3 li,.note-content4 li,.note-content5 li,.note-content6 li,.note-content7 li,.note-content8 li,.note-content9 li,.note-content10 li{
 
font-family:Arial;
 
font-family:Arial;
 
font-size:18px;
 
font-size:18px;
 
text-align:justify;
 
text-align:justify;
 
}
 
}
</style>  
+
</style>
 +
     
 
    
 
    
     
+
     
 
     </div>
 
     </div>
 
</header>
 
</header>
   
+
 
 
<div id="main">         
 
<div id="main">         
 
       <div id="content" class="home blog single-author one-column content" role="main">
 
       <div id="content" class="home blog single-author one-column content" role="main">
     
 
  
<div id="Week1"></div>      
+
 
 +
 
 +
<!------------------------------------week 1 start------------------------------------------------>
 +
<div id="Week1"></div>
 
<article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 
<article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 
<header class="entry-header">
 
<header class="entry-header">
<div class="entry-title" align="center" >Notes For Modified Cyanobacteria:A Controllable Lipid Producer</div>
+
<h1 class="entry-title">Week1(7/31/2016-8/6/2016)</h1>
 
</header><!-- .entry-header -->
 
</header><!-- .entry-header -->
        <h1 class="entry-title">Week1(8/1/2016-8/7/2016)</h1>
+
 
 
<div class="entry-content">
 
<div class="entry-content">
 +
<div class="note-content2">
  
 +
<li>
  
<p>
 
    <li>Cultivation: 30µL mother liquid of Synechococcus sp. PCC 7942 (wild type)were cultivated in 10 mL BG-11-media at 30°C and 140rpm.<br/></li>
 
<li>The genome DNA of 7942 was extracted using a Genomic DNA Isolation Kit.</li>
 
                        </p>
 
         
 
         
 
       
 
<hr class="article">
 
    </article><!-- #post-4252 -->
 
  
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Jul.31th</b></h1>
 +
<div style="padding-left:32px;">1.Cultivation: 30µL mother liquid of Synechococcus sp PCC 7942 (wild type)were cultivated in 10 mL BG-11-media at 30°C and 140rpm.<br/>
 +
2.The genome DNA of 7942 was extracted using a Genomic DNA Isolation Kit.</div><br/>
  
  
 +
</div>
 +
<a class="expand-btn2">Show More</a>
  
<div id="Week2"></div>
 
<article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 
<header class="entry-header">
 
<h1 class="entry-title">Week2(8/15/2016-8/21/2016)</h1>
 
</header><!-- .entry-header -->
 
  
<div class="entry-content">
 
<p><li>Synechococcus sp PCC 7942 had no signals of life.</li><br />
 
  
<img align="center" src="https://static.igem.org/mediawiki/2016/3/37/Igem--6803-week2.jpg"  alt="Igem-6803-week2" width="300px"><br/>
+
</div><!-- .entry-content -->
</a>
+
 
 +
 
          
 
          
<hr class="article">
 
 
    </article>
 
    </article>
  
 
          
 
          
  
<div id="Week3"></div>
+
<!------------------------------------week1 end------------------------------------------------>
<article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
+
<h1 class="entry-title">Week3(8/29/2016-9/4/2016)</h1>
+
<div class="entry-content">
+
<p><li>pMV-G19 and pMV-G15  containing our target genes were received.</li><br/>
+
  
 +
   
 +
         
 +
 
  
<img align="center" src="https://static.igem.org/mediawiki/2016/6/6d/Igem-6803-week3-1.jpg"  alt="Igem-6803-week3-1" width="300px" ><br/>
 
</a>
 
  
<li>Colonies were used to inoculate overnight cultures.</li>
+
<!------------------------------------week2 start------------------------------------------------>     
<li>Plasmids were isolated using a miniprep kit.</li>
+
<div id="Week2"></div>
 +
<article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 +
<h1 class="entry-title">Week2(8/14/2016-8/20/2016)</h1>
 +
<div class="entry-content">
  
<b>Amplification of <i>19</i> and <i>15</i> with Q5 High-Fidelity DNA Polymerase out of E.coli </b><br/>
 
  
 +
<div class="note-content4">
  
<div class="note-content">
 
  
 +
<li>
  
  
<li><i>19</i> amplification at 65.0°C with 19.rev/fwd primes.</li>
 
  PCR worked, positive control worked, no amplification of <i>19</i>.
 
<li><i>15</i> amplification at 65.0°C with 15.rev/fwd primes.</li>
 
  PCR worked, positive control worked, no amplification of <i>15</i>.
 
<li>A product length of 900 bp was expected. The gel shows that most plasmids seem to be correct.</li>
 
<li>This result was confirmed by sequencing.</li>
 
<li>The fragments of <i>19</i> and <i>15</i> were purified with PCR Purification Kit.</li>
 
  
         
+
<div style="padding-left:32px;">Synechococcus sp PCC 7942 had no signals of life.</div><br/>   
       
+
  
 
  </div>
 
  </div>
<a class="expand-btn">Show More</a>
+
<a class="expand-btn4">Show More</a>
  
  
<b>Ligation of <i>15</i> with <i>19</i></b><br/>
 
  
<div class="note-content2">
 
 
<li>We add a single 3`-adenine overhang to each end of the fragment of <i>19</i> and then purified with DNA Purification Kit.</li>
 
<li><i>19</i> was ligated into T vectors via TA clone and transformed into E.coli via heat shock.</li>
 
<li>A colony PCR was performed with five colonies.</li>
 
  Gel electrophoresis showed that 5 colonies were positive for insertion of <i>19</i>.</li>
 
  Two of these colonies containing <i>19</i> were used to inoculate overnight cultures.</li>
 
<li><i>15</i> gene fragment was phosphorylated.</li>
 
<li>Plasmids containing T vector with <i>19</i>(pT-19)were isolated using a miniprep kit.</li>
 
<li>Mono-restriction digest of pT-19 with stu I. </li>
 
<li>The enzyme-digested product was dephosphorylation.</li>
 
<li>Dephosphorylated plasmid and phosphorylated gene <i>15</i> were connected.</li>
 
  Ligation product was transformed into E.coli via heat shock.</li>
 
<li>A colony PCR was performed with twelve colonies.</li>
 
  Gel electrophoresis showed that 2 colonies were positive for connecting the plasmid and gene fragment.</li>
 
  These two colonies were used to inoculate overnight cultures.</li>
 
<li>Plasmids with correct sequence of  <i>19-15</i>  were isolated using a miniprep kit.</li>
 
<li>Mono-restriction digest of pT-19-15 with Nru I.</li>
 
<li>The enzyme-digested product was dephosphorylation.</li><br/>
 
<img align="center" src="https://static.igem.org/mediawiki/2016/a/aa/Igem-6803-week3.png"  alt="Igem-6803-week3-2" width="800" height="533"><br/>
 
</a>
 
         
 
       
 
</div>
 
            <a class="expand-btn2">Show More</a>
 
  
  
 +
</div><!-- .entry-content -->
  
 +
 
          
 
          
<hr class="article">
+
 
    </article>
 
    </article>
  
  
 +
<!------------------------------------week2 end------------------------------------------------>
  
       
 
    <div id="Week4"></div>     
 
<article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 
<h1 class="entry-title">Week4(9/5/2016-9/11/2016)</h1>
 
<div class="entry-content">
 
<p><li>Colonies containing gene <i>13</i> were used to inoculate overnight cultures.</li>
 
<li>Plasmids were isolated using a miniprep kit.</li>
 
<b>Amplification of <i>13</i> with Q5 High-Fidelity DNA Polymerase out of E.coli </b><br/>
 
  
  
<div class="note-content3">
 
  
  
 +
 +
  
<li><i>13</i> amplification at 65.0°C with 13.rev/fwd primes</li>
+
<!------------------------------------week3 start------------------------------------------------>      
PCR worked, positive control worked, no amplification of <i>13</i></li>
+
<div id="Week3"></div>
<li>The fragments of <i>13</i> were purified with PCR Purification Kit.</li>
+
        <article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
<li><i>13</i> gene fragment was phosphorylated.</li>
+
<header class="entry-header">
         
+
<h1 class="entry-title">Week3(8/28/2016-9/3/2016)</h1>
       
+
</header><!-- .entry-header -->
  
</div>
+
<div class="entry-content">
<a class="expand-btn3">Show More</a>
+
<div class="note-content4">
 +
  
  
<b>Insertion of Ni promoter and ligation of <i>13-19-15</i></b><br/>
+
<li>
  
<div class="note-content4">
 
  
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Aug.29th</b></h1>
 +
<div style="padding-left:32px;">1.pMV-G19 and pMV-G15  containing our target genes were received.<br/>
 +
2.Colonies were used to inoculate overnight cultures.
 +
</div>
 +
<br/>
  
<li>Ni inducible promoter was ligated into pCPC-3301 vector.</li>
+
<b><h1 style="font-size:108%">&nbsp;&nbsp;Aug.30th</b></h1>
<li>Phosphorylated <i>13</i> was ligated into pT-19-15 and transformed into E.coli via heat shock.</li>
+
<div style="padding-left:32px;">1.Plasmids were isolated using a miniprep kit.<br/>
<li>Single colonies were obtained by plating.</li>
+
2.Amplification of <i>19</i> and <i>15</i> with Q5 High-Fidelity DNA Polymerase out of E.coli.<br/>
<li>A colony PCR of Ni inducible promoter(pCPC-3301-Ni) was performed with 12 colonies.</li>
+
&nbsp;&nbsp;<i>19</i> amplification at 65.0°C with 19.rev/fwd primes.<br/>
Two of the successful ones were used to inoculate overnight cultures.</li>
+
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;PCR worked, positive control worked, no amplification of <i>19</i>.<br/>
<li>A colony PCR of pT-13-19-15 was performed with 7 colonies.</li>
+
&nbsp;&nbsp;<i>15</i> amplification at 65.0°C with 15.rev/fwd primes.<br/>
  Two of the successful ones were used to inoculate overnight cultures.</li>
+
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;PCR worked, positive control worked, no amplification of <i>15</i>.<br/>
<li>Two kinds of plasmids were isolated using a miniprep kit.</li><br/>
+
3.A product length of 900 bp was expected. The gel shows that most plasmids seem to be correct.<br/>
 +
&nbsp;&nbsp;This result was confirmed by sequencing.<br/>
 +
4.The fragments of <i>19</i> and <i>15</i> were purified with PCR Purification Kit.<br/>
 +
</div>
 +
<br/>
  
<img align="center" src="https://static.igem.org/mediawiki/2016/8/81/Igem-6803-week4.png"  alt="Igem-6803-week4" width="800" height="533"> <br/>
+
<b><h1 style="font-size:108%">&nbsp;&nbsp;Aug.31th</b></h1>
</a>
+
<div style="padding-left:32px;">1.Ligation of <i>15</i> with <i>19</i>.<br/>
         
+
2.We add a single 3`-adenine overhang to each end of the fragment of <i>19</i> and then purified with DNA Purification Kit.<br/>
       
+
3.<i>19</i> was ligated into T vectors via TA clone and transformed into E.coli via heat shock.<br/>
 
</div>
 
</div>
            <a class="expand-btn4">Show More</a>
+
<br/>
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.1th</b></h1>
 +
<div style="padding-left:32px;">1.A colony PCR was performed with five colonies.<br/>
 +
2.Gel electrophoresis showed that 5 colonies were positive for insertion of <i>19</i>.<br/>
 +
3.Two of these colonies containing <i>19</i> were used to inoculate overnight cultures.<br/>
 +
4.<i>15</i> gene fragment was phosphorylated.<br/>
 +
</div>
 +
<br/>
 +
 
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.2th</b></h1>
 +
<div style="padding-left:32px;">1.Plasmids containing T vector with <i>19</i>(pT-19)were isolated using a miniprep kit.<br/>
 +
2.Mono-restriction digest of pT-19 with stu I. <br/>
 +
3.The enzyme-digested product was dephosphorylation.<br/>
 +
4.Dephosphorylated plasmid and phosphorylated gene <i>15</i> were connected.<br/>
 +
5.Ligation product was transformed into E.coli via heat shock.<br/>
 +
</div>
 +
<br/>
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.3th</b></h1>
 +
<div style="padding-left:32px;">1.A colony PCR was performed with twelve colonies.<br/>
 +
2.Gel electrophoresis showed that 2 colonies were positive for connecting the plasmid and gene fragment.<br/>
 +
3.These two colonies were used to inoculate overnight cultures.<br/>
 +
</div>
 +
<br/>
 +
 
 +
 
 +
 
 +
</div>
 +
<a class="expand-btn4">Show More</a>
 +
 
 +
 
 +
</div><!-- .entry-content -->
  
 +
 
          
 
          
<hr class="article">
 
 
    </article>
 
    </article>
  
 +
<!------------------------------------week3 end------------------------------------------------>
  
<div id="Week5"></div>
 
  
<article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
+
 
<h1 class="entry-title">Week5(9/12/2016-9/18/2016)</h1>
+
<!------------------------------------week4 start------------------------------------------------>       
 +
<div id="Week4"></div>
 +
        <article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 +
<header class="entry-header">
 +
<h1 class="entry-title">Week4(9/4/2016-9/10/2016)</h1>
 +
</header><!-- .entry-header -->
 +
 
 
<div class="entry-content">
 
<div class="entry-content">
<p>
+
<div class="note-content4">
 +
  
<li>Plasmids pT-13-19-15 were handed in for sequencing, which confirmed its correctness.</li>
 
<b>The sequencing results for both of them were error.</b>
 
<li>Colonies containing Ni inducible promoter were used to inoculate overnight cultures.</li>
 
<li>PCR was performed to check if the gene fragments were ligated correctly.</li>
 
    13_ fwd and 15_rev on pT-13-19-15<br/>
 
    Gel electrophoresis showed that it failed.<br/>
 
<li>Plasmids pCPC-3031-Ni were isolated using a miniprep kit.</li>
 
<li>Several PCRs were performed to check if the gene fragments were ligated correctly.</li>
 
1.13_fwd and 13_rev on pT-13-19-15<br/>
 
2.19_fwd and 19_rev on pT-13-19-15<br/>
 
3.15_fwd and 15_rev on pT-13-19-15<br/>
 
4.13_fwd and 19_rev on pT-13-19-15<br/>
 
5.19_fwd and 15_rev on pT-13-19-15<br/>
 
6.13_ wd and 15_rev on pT-13-19-15<br/>
 
    <b>The fourth and sixth ones were not successful.</b><br/>
 
<li><b>Repetition:</b>  Phosphorylated <i>13</i> was ligated into pT-19-15 and transformed into E.coli via heat shock.</li>
 
<li><b>Repetition:</b> Several PCRs were performed to check if the gene fragments were ligated correctly.</li>
 
1.13_fwd and 13_rev on pT-13-19-15<br/>
 
2.13_fwd and 19_rev on pT-13-19-15<br/>
 
<b>The second one was failed.</b><br/>
 
<img align="center"src="https://static.igem.org/mediawiki/2016/4/40/Igem-6803-week5.png"  alt="Igem-6803-week5" width="800" height="533" ><br/>
 
</a>
 
  
 +
<li>
 +
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.4th</b></h1>
 +
<div style="padding-left:32px;">1.Plasmids with correct sequence of  <i>19-15</i>  were isolated using a miniprep kit.<br/>
 +
2.Mono-restriction digest of pT-19-15 with Nru I.<br/>
 +
3.The enzyme-digested product was dephosphorylation.<br/>
 +
</div>
 
<br/>
 
<br/>
  
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.6th</b></h1>
 +
<div style="padding-left:32px;">Colonies containing gene <i>13</i> were used to inoculate overnight cultures.
 +
<br/>
 +
</div>
 +
<br/>
  
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.7th</b></h1>
 +
<div style="padding-left:32px;">1.Plasmids were isolated using a miniprep kit.<br/>
 +
2.Amplification of <i>13</i> with Q5 High-Fidelity DNA Polymerase out of E.coli <br/>
 +
3.<i>13</i> amplification at 65.0°C with 13.rev/fwd primes<br/>
 +
&nbsp;&nbsp;PCR worked, positive control worked, no amplification of <i>13</i><br/>
 +
4.The fragments of <i>13</i> were purified with PCR Purification Kit.<br/>
 +
</div>
 +
<br/>
  
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.8th</b></h1>
 +
<div style="padding-left:32px;"><i>13</i> gene fragment was phosphorylated.<br/>
 +
</div>
 +
<br/>
 +
 +
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.9th</b></h1>
 +
<div style="padding-left:32px;">1.Insertion of Ni promoter and ligation of <i>13-19-15</i><br/>
 +
2.Ni inducible promoter was ligated into pCPC-3301 vector.<br/>
 +
3.Phosphorylated <i>13</i> was ligated into pT-19-15 and transformed into E.coli via heat shock.<br/>
 +
4.Single colonies were obtained by plating.<br/>
 +
</div>
 +
<br/>
 +
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.10th</b></h1>
 +
<div style="padding-left:32px;">
 +
1.A colony PCR of Ni inducible promoter(pCPC-3301-Ni) was performed with 12 colonies.<br/>
 +
&nbsp;&nbsp;Two of the successful ones were used to inoculate overnight cultures.<br/>
 +
2.A colony PCR of pT-13-19-15 was performed with 7 colonies.<br/>
 +
&nbsp;&nbsp;Two of the successful ones were used to inoculate overnight cultures.<br/>
 +
</div>
 +
<br/>
 +
 +
 +
</div>
 +
<a class="expand-btn4">Show More</a>
  
 +
</div><!-- .entry-content -->
  
 +
 
          
 
          
<hr class="article">
+
 
    </article>
 
    </article>
  
 +
<!------------------------------------week4 end------------------------------------------------>
  
  
  
  
 +
<!------------------------------------week5 start------------------------------------------------>       
 +
<div id="Week5"></div>
 +
        <article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 +
<header class="entry-header">
 +
<h1 class="entry-title">Week5(9/11/2016-9/17/2016)</h1>
 +
</header><!-- .entry-header -->
  
 +
<div class="entry-content">
 +
<div class="note-content4">
  
  
 +
<li>
  
  
  <div id="Week6"></div>  
+
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.11th</b></h1>
 +
<div style="padding-left:32px;">Two kinds of plasmids were isolated using a miniprep kit.<br/>
 +
</div>
 +
<br/>
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.12th</b></h1>
 +
<div style="padding-left:32px;">Two kinds of plasmids were isolated using a miniprep kit.
 +
<br/>
 +
</div>
 +
<br/>
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.14th</b></h1>
 +
<div style="padding-left:32px;">The sequencing results for both of them were error.<br/>
 +
</div>
 +
<br/>
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.15th</b></h1>
 +
<div style="padding-left:32px;">1.Colonies containing Ni inducible promoter were used to inoculate overnight cultures.<br/>
 +
2.PCR was performed to check if the gene fragments were ligated correctly.<br/>
 +
&nbsp;&nbsp;13_ fwd and 15_rev on pT-13-19-15<br/>
 +
3.Gel electrophoresis showed that it failed.<br/>
 +
</div>
 +
<br/>
 +
 
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.16th</b></h1>
 +
<div style="padding-left:32px;">Plasmids pCPC-3031-Ni were isolated using a miniprep kit.<br/>
 +
</div>
 +
<br/>
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.17th</b></h1>
 +
<div style="padding-left:32px;">
 +
1.Several PCRs were performed to check if the gene fragments were ligated correctly.<br/>
 +
&nbsp;&nbsp;13_fwd and 13_rev on pT-13-19-15<br/>
 +
&nbsp;&nbsp;19_fwd and 19_rev on pT-13-19-15<br/>
 +
&nbsp;&nbsp;15_fwd and 15_rev on pT-13-19-15<br/>
 +
&nbsp;&nbsp;13_fwd and 19_rev on pT-13-19-15<br/>
 +
&nbsp;&nbsp;19_fwd and 15_rev on pT-13-19-15<br/>
 +
&nbsp;&nbsp;13_ wd and 15_rev on pT-13-19-15<br/>
 +
<b>The fourth and sixth ones were not successful.</b><br/>
 +
2.<b>Repetition:</b> Phosphorylated <i>13</i> was ligated into pT-19-15 and transformed into E.coli via heat shock.<br/>
 +
</div>
 +
<br/>
 +
 
 +
 
 +
 
 +
</li>
 +
 
 +
</div>
 +
<a class="expand-btn4">Show More</a>
 +
</div><!-- .entry-content -->
 +
 
 +
 
          
 
          
        <article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
+
 +
    </article>
 +
 
 +
<!------------------------------------week5 end------------------------------------------------>
 +
 
 +
 
 +
 
 +
<!------------------------------------week6 start------------------------------------------------>       
 +
<div id="Week6"></div>
 +
        <article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 
<header class="entry-header">
 
<header class="entry-header">
<h1 class="entry-title">Week6(9/19/2016-9/25/2016)</h1>
+
<h1 class="entry-title">Week6(9/18/2016-9/24/2016)</h1>
 
</header><!-- .entry-header -->
 
</header><!-- .entry-header -->
  
 
<div class="entry-content">
 
<div class="entry-content">
<p>
 
<li>Medium preparation :BG-11.</li>
 
<li>19_ fwd and 15_rev were used to amplify <i>19-15</i>.</li>
 
Gel electrophoresis showed that amplification of fragments was successfull.</li>
 
<li>Ligated <i>13</i> and <i>19-15</i> via overlap PCR.</li>
 
This PCR worked well and the products were extracted from the gel using a Agarose Gel DNA Extration Kit.</li>
 
<li>Restriction digest on pCPC-3031-Ni with Sac I.</li><br/>
 
  
<img align="center" src="https://static.igem.org/mediawiki/2016/8/89/Igem-6803-week6-2.jpg" alt="Igem-6803-week6-1" width="300px"><br/>
+
<div class="note-content4">
  
<li>The fragment <i>13-19-15</i> was ligated onto T vector and transformed into E.coli via heat shock.</li><br/>
 
  
<img align="center" src="https://static.igem.org/mediawiki/2016/0/06/Igem-6803-week6.jpg"  alt="Igem-6803-week6-2" width="300px" ><br/>
+
<li>
  
<li>A colony PCR of pT-13-19-15 was performed with 12 colonies.</li>
 
Two of these colonies containing pT-13-19-15 were used to inoculate overnight cultures.</li>
 
<li><i>13-19-15</i> gene fragment was phosphorylated.</li>
 
<li>Phosphorylated <i>13-19-15</i> was ligated into pCPC-3031-Ni and transformed into E.coli via heat shock.</li>
 
  
<li>Plasmids pT-13-19-15 were isolated using a miniprep kit.</li>
+
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.18th</b></h1>
<li>A colony PCR of pCPC-3031-Ni-13-19-15 was performed with 12 colonies.</li>
+
<div style="padding-left:32px;"><b>Repetition:</b> Several PCRs were performed to check if the gene fragments were ligated correctly.<br/>
Three colonies were proved to be true. And two of them were used to inoculate overnight cultures.</li><br/>
+
&nbsp;&nbsp;13_fwd and 13_rev on pT-13-19-15<br/>
 +
&nbsp;&nbsp;13_fwd and 19_rev on pT-13-19-15<br/>
 +
<b>The second one was failed.</b><br/>
 +
</div>
 +
<br/>
  
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.21th</b></h1>
 +
<div style="padding-left:32px;">1.Medium preparation :BG-11.<br/>
 +
2.19_ fwd and 15_rev were used to amplify <i>19-15</i>.
 +
<br/>
 +
</div>
 +
<br/>
  
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.22th</b></h1>
 +
<div style="padding-left:32px;">1.Gel electrophoresis showed that amplification of fragments was successfull.<br/>
 +
2.Ligated <i>13</i> and <i>19-15</i> via overlap PCR.<br/>
 +
3.This PCR worked well and the products were extracted from the gel using a Agarose Gel DNA Extration Kit.<br/>
 +
4.Restriction digest on pCPC-3031-Ni with Sac I.<br/>
 +
5.The fragment <i>13-19-15</i> was ligated onto T vector and transformed into E.coli via heat shock.<br/>
 +
</div>
 +
<br/>
  
<img align="center" src="https://static.igem.org/mediawiki/2016/2/2d/Igem-6803-week6-3.png"  alt="Igem-6803-week6-3" width="800" height="533" ><br/>
+
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.23th</b></h1>
 +
<div style="padding-left:32px;">1.A colony PCR of pT-13-19-15 was performed with 12 colonies.<br/>
 +
2.Two of these colonies containing pT-13-19-15 were used to inoculate overnight cultures.<br/>
 +
3.<i>13-19-15</i> gene fragment was phosphorylated.<br/>
 +
4.Phosphorylated <i>13-19-15</i> was ligated into pCPC-3031-Ni and transformed into E.coli via heat shock.<br/>
 +
</div>
 +
<br/>
  
  
<br />
+
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.24th</b></h1>
 +
<div style="padding-left:32px;">Plasmids pT-13-19-15 were isolated using a miniprep kit.<br/>
 +
</div>
 +
<br/>
  
 +
</div>
 +
<a class="expand-btn4">Show More</a>
 +
 +
 +
</div><!-- .entry-content -->
  
 +
 
          
 
          
<hr class="article">
+
 
    </article>
 
    </article>
  
<div id="Week7"></div>  
+
<!------------------------------------week6 end------------------------------------------------>
  
  
<article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
+
 
 +
<!------------------------------------week7 start------------------------------------------------>       
 +
<div id="Week7"></div>
 +
        <article id="post-4252" class="post-4252 post type-post status-publish format-standard has-post-thumbnail hentry category-150 tag-174 tag-xinjiang tag-173">
 
<header class="entry-header">
 
<header class="entry-header">
<h1 class="entry-title">Week7(9/26/2016-10/2/2016)</h1>
+
<h1 class="entry-title">Week7(9/25/2016-10/1/2016)</h1>
 
</header><!-- .entry-header -->
 
</header><!-- .entry-header -->
  
 
<div class="entry-content">
 
<div class="entry-content">
<p>
+
<div class="note-content4">
<li>Plasmids pT-13-19-15 were handed in for sequencing, which confirmed its correctness.</li>
+
 +
 
 +
<li>
 +
 
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.25th</b></h1>
 +
<div style="padding-left:32px;">1.A colony PCR of pCPC-3031-Ni-13-19-15 was performed with 12 colonies.<br/>
 +
2.Three colonies were proved to be true. And two of them were used to inoculate overnight cultures.<br/>
 +
</div>
 +
<br/>
 +
 
 +
<b><h1 style="font-size:108%">&nbsp;&nbsp;Sep.26th</b></h1>
 +
<div style="padding-left:32px;">Plasmids pT-13-19-15 were handed in for sequencing, which confirmed its correctness.<br/>
 
<b>The sequencing results for them were correct.</b>
 
<b>The sequencing results for them were correct.</b>
 +
<br/>
 +
</div>
 +
<br/>
  
<br />
 
  
  
<hr class="article">
+
</div>
    </article>
+
<a class="expand-btn4">Show More</a>
<!-- #post-4252 -->
+
 
           
+
</div><!-- .entry-content -->
 +
 
 +
 
          
 
          
 +
    </article>
 +
 +
<!------------------------------------week7 end------------------------------------------------>
  
  
  
<!-- #post-4176 -->
 
           
 
           
 
  
 
          
 
          
Line 368: Line 510:
 
<li><a class="topLink" href="#Week6" style="color:#5555FF">Week6</a></li>
 
<li><a class="topLink" href="#Week6" style="color:#5555FF">Week6</a></li>
 
<li><a class="topLink" href="#Week7" style="color:#5555FF">Week7</a></li>
 
<li><a class="topLink" href="#Week7" style="color:#5555FF">Week7</a></li>
 +
                                                     
 
</ul>
 
</ul>
 
</div>   
 
</div>   
Line 385: Line 528:
 
</div>
 
</div>
  
<div id="back-to-top" title="返回本页顶部" >
+
 
<svg id="rocket" version="1.1" xmlns="http://www.w3.org/2000/svg" width="32" height="32" viewBox="0 0 64 64">
+
        <path fill="#B6B6B6" d="M42.057,37.732c0,0,4.139-25.58-9.78-36.207c-0.307-0.233-0.573-0.322-0.802-0.329
+
        c-0.227,0.002-0.493,0.083-0.796,0.311c-13.676,10.31-8.95,35.992-8.95,35.992c-10.18,8-7.703,9.151-1.894,23.262
+
        c1.108,2.693,3.048,2.06,3.926,0.115c0.877-1.943,2.815-6.232,2.815-6.232l11.029,0.128c0,0,2.035,4.334,2.959,6.298
+
        c0.922,1.965,2.877,2.644,3.924-0.024C49.974,47.064,52.423,45.969,42.057,37.732z M31.726,23.155
+
        c-2.546-0.03-4.633-2.118-4.664-4.665c-0.029-2.547,2.012-4.587,4.559-4.558c2.546,0.029,4.634,2.117,4.663,4.664
+
        C36.314,21.143,34.272,23.184,31.726,23.155z"></path>
+
    </svg>
+
</div>
+
  
 
</body>
 
</body>
Line 406: Line 540:
 
<!-- Main JS -->
 
<!-- Main JS -->
 
 
   
 
    <script>
 
var x = 600;
 
var y = 2000;
 
for ( var i = 1; i < 22; i++ ){ 
 
var rand = parseInt(Math.random() * (x - y + 1) + y);
 
var randpic = "http://randomimage.setgetgo.com/get.php?width=" + rand;
 
    $("#MemberName" + i).attr("src", randpic);
 
}
 
    </script>
 
    <script type="text/javascript">
 
window._wpemojiSettings = {"baseUrl":"https:\/\/s.w.org\/images\/core\/emoji\/72x72\/","ext":".png","source":{"concatemoji":"http:\/\/www.camarts.cn\/wp-includes\/js\/wp-emoji-release.min.js?ver=4.5.3"}};
 
!function(a,b,c){function d(a){var c,d,e,f=b.createElement("canvas"),g=f.getContext&&f.getContext("2d"),h=String.fromCharCode;if(!g||!g.fillText)return!1;switch(g.textBaseline="top",g.font="600 32px Arial",a){case"flag":return g.fillText(h(55356,56806,55356,56826),0,0),f.toDataURL().length>3e3;case"diversity":return g.fillText(h(55356,57221),0,0),c=g.getImageData(16,16,1,1).data,d=c[0]+","+c[1]+","+c[2]+","+c[3],g.fillText(h(55356,57221,55356,57343),0,0),c=g.getImageData(16,16,1,1).data,e=c[0]+","+c[1]+","+c[2]+","+c[3],d!==e;case"simple":return g.fillText(h(55357,56835),0,0),0!==g.getImageData(16,16,1,1).data[0];case"unicode8":return g.fillText(h(55356,57135),0,0),0!==g.getImageData(16,16,1,1).data[0]}return!1}function e(a){var c=b.createElement("script");c.src=a,c.type="text/javascript",b.getElementsByTagName("head")[0].appendChild(c)}var f,g,h,i;for(i=Array("simple","flag","unicode8","diversity"),c.supports={everything:!0,everythingExceptFlag:!0},h=0;h<i.length;h++)c.supports[i[h]]=d(i[h]),c.supports.everything=c.supports.everything&&c.supports[i[h]],"flag"!==i[h]&&(c.supports.everythingExceptFlag=c.supports.everythingExceptFlag&&c.supports[i[h]]);c.supports.everythingExceptFlag=c.supports.everythingExceptFlag&&!c.supports.flag,c.DOMReady=!1,c.readyCallback=function(){c.DOMReady=!0},c.supports.everything||(g=function(){c.readyCallback()},b.addEventListener?(b.addEventListener("DOMContentLoaded",g,!1),a.addEventListener("load",g,!1)):(a.attachEvent("onload",g),b.attachEvent("onreadystatechange",function(){"complete"===b.readyState&&c.readyCallback()})),f=c.source||{},f.concatemoji?e(f.concatemoji):f.wpemoji&&f.twemoji&&(e(f.twemoji),e(f.wpemoji)))}(window,document,window._wpemojiSettings);
 
</script>
 
 
          
 
          
 
         <script>  /* show more */
 
         <script>  /* show more */
Line 482: Line 602:
  
 
         </script>
 
         </script>
 +
<script>  /* show more */
  
 +
      $(document).ready(function() {
 +
  $( '.expand-btn5' ).click(function() {
 +
var $text = $(this).html();
 +
$(this).siblings( '.note-content5' ).toggle();
 +
if( $text === 'Show More' ) {
 +
$(this).html( 'Show Less' );
 +
} else {
 +
$(this).html( 'Show More' );
 +
}
 +
});
 +
});
  
 +
        </script>
 +
<script>  /* show more */
 +
 +
      $(document).ready(function() {
 +
  $( '.expand-btn6' ).click(function() {
 +
var $text = $(this).html();
 +
$(this).siblings( '.note-content6' ).toggle();
 +
if( $text === 'Show More' ) {
 +
$(this).html( 'Show Less' );
 +
} else {
 +
$(this).html( 'Show More' );
 +
}
 +
});
 +
});
 +
 +
        </script>
  
 
          
 
          
Line 504: Line 652:
 
</html>
 
</html>
  
{{:Team:Tianjin/Templates/AddJS|:Team:Tianjin/Attribution/js/camarts.js}}
+
 
 
{{:Team:Tianjin/Templates/Sponsor|}}
 
{{:Team:Tianjin/Templates/Sponsor|}}

Revision as of 00:35, 14 October 2016

TEAM TIANJIN


Team Tianjin-Attribution

Week1(7/31/2016-8/6/2016)

  •   Jul.31th

    1.Cultivation: 30µL mother liquid of Synechococcus sp PCC 7942 (wild type)were cultivated in 10 mL BG-11-media at 30°C and 140rpm.
    2.The genome DNA of 7942 was extracted using a Genomic DNA Isolation Kit.

  • Show More

    Week2(8/14/2016-8/20/2016)

  • Synechococcus sp PCC 7942 had no signals of life.

  • Show More

    Week3(8/28/2016-9/3/2016)

  •   Aug.29th

    1.pMV-G19 and pMV-G15 containing our target genes were received.
    2.Colonies were used to inoculate overnight cultures.

      Aug.30th

    1.Plasmids were isolated using a miniprep kit.
    2.Amplification of 19 and 15 with Q5 High-Fidelity DNA Polymerase out of E.coli.
      19 amplification at 65.0°C with 19.rev/fwd primes.
            PCR worked, positive control worked, no amplification of 19.
      15 amplification at 65.0°C with 15.rev/fwd primes.
            PCR worked, positive control worked, no amplification of 15.
    3.A product length of 900 bp was expected. The gel shows that most plasmids seem to be correct.
      This result was confirmed by sequencing.
    4.The fragments of 19 and 15 were purified with PCR Purification Kit.

      Aug.31th

    1.Ligation of 15 with 19.
    2.We add a single 3`-adenine overhang to each end of the fragment of 19 and then purified with DNA Purification Kit.
    3.19 was ligated into T vectors via TA clone and transformed into E.coli via heat shock.

      Sep.1th

    1.A colony PCR was performed with five colonies.
    2.Gel electrophoresis showed that 5 colonies were positive for insertion of 19.
    3.Two of these colonies containing 19 were used to inoculate overnight cultures.
    4.15 gene fragment was phosphorylated.

      Sep.2th

    1.Plasmids containing T vector with 19(pT-19)were isolated using a miniprep kit.
    2.Mono-restriction digest of pT-19 with stu I.
    3.The enzyme-digested product was dephosphorylation.
    4.Dephosphorylated plasmid and phosphorylated gene 15 were connected.
    5.Ligation product was transformed into E.coli via heat shock.

      Sep.3th

    1.A colony PCR was performed with twelve colonies.
    2.Gel electrophoresis showed that 2 colonies were positive for connecting the plasmid and gene fragment.
    3.These two colonies were used to inoculate overnight cultures.

  • Show More

    Week4(9/4/2016-9/10/2016)

  •   Sep.4th

    1.Plasmids with correct sequence of 19-15 were isolated using a miniprep kit.
    2.Mono-restriction digest of pT-19-15 with Nru I.
    3.The enzyme-digested product was dephosphorylation.

      Sep.6th

    Colonies containing gene 13 were used to inoculate overnight cultures.

      Sep.7th

    1.Plasmids were isolated using a miniprep kit.
    2.Amplification of 13 with Q5 High-Fidelity DNA Polymerase out of E.coli
    3.13 amplification at 65.0°C with 13.rev/fwd primes
      PCR worked, positive control worked, no amplification of 13
    4.The fragments of 13 were purified with PCR Purification Kit.

      Sep.8th

    13 gene fragment was phosphorylated.

      Sep.9th

    1.Insertion of Ni promoter and ligation of 13-19-15
    2.Ni inducible promoter was ligated into pCPC-3301 vector.
    3.Phosphorylated 13 was ligated into pT-19-15 and transformed into E.coli via heat shock.
    4.Single colonies were obtained by plating.

      Sep.10th

    1.A colony PCR of Ni inducible promoter(pCPC-3301-Ni) was performed with 12 colonies.
      Two of the successful ones were used to inoculate overnight cultures.
    2.A colony PCR of pT-13-19-15 was performed with 7 colonies.
      Two of the successful ones were used to inoculate overnight cultures.

  • Show More

    Week5(9/11/2016-9/17/2016)

  •   Sep.11th

    Two kinds of plasmids were isolated using a miniprep kit.

      Sep.12th

    Two kinds of plasmids were isolated using a miniprep kit.

      Sep.14th

    The sequencing results for both of them were error.

      Sep.15th

    1.Colonies containing Ni inducible promoter were used to inoculate overnight cultures.
    2.PCR was performed to check if the gene fragments were ligated correctly.
      13_ fwd and 15_rev on pT-13-19-15
    3.Gel electrophoresis showed that it failed.

      Sep.16th

    Plasmids pCPC-3031-Ni were isolated using a miniprep kit.

      Sep.17th

    1.Several PCRs were performed to check if the gene fragments were ligated correctly.
      13_fwd and 13_rev on pT-13-19-15
      19_fwd and 19_rev on pT-13-19-15
      15_fwd and 15_rev on pT-13-19-15
      13_fwd and 19_rev on pT-13-19-15
      19_fwd and 15_rev on pT-13-19-15
      13_ wd and 15_rev on pT-13-19-15
    The fourth and sixth ones were not successful.
    2.Repetition: Phosphorylated 13 was ligated into pT-19-15 and transformed into E.coli via heat shock.

  • Show More

    Week6(9/18/2016-9/24/2016)

  •   Sep.18th

    Repetition: Several PCRs were performed to check if the gene fragments were ligated correctly.
      13_fwd and 13_rev on pT-13-19-15
      13_fwd and 19_rev on pT-13-19-15
    The second one was failed.

      Sep.21th

    1.Medium preparation :BG-11.
    2.19_ fwd and 15_rev were used to amplify 19-15.

      Sep.22th

    1.Gel electrophoresis showed that amplification of fragments was successfull.
    2.Ligated 13 and 19-15 via overlap PCR.
    3.This PCR worked well and the products were extracted from the gel using a Agarose Gel DNA Extration Kit.
    4.Restriction digest on pCPC-3031-Ni with Sac I.
    5.The fragment 13-19-15 was ligated onto T vector and transformed into E.coli via heat shock.

      Sep.23th

    1.A colony PCR of pT-13-19-15 was performed with 12 colonies.
    2.Two of these colonies containing pT-13-19-15 were used to inoculate overnight cultures.
    3.13-19-15 gene fragment was phosphorylated.
    4.Phosphorylated 13-19-15 was ligated into pCPC-3031-Ni and transformed into E.coli via heat shock.

      Sep.24th

    Plasmids pT-13-19-15 were isolated using a miniprep kit.

  • Show More

    Week7(9/25/2016-10/1/2016)

  •   Sep.25th

    1.A colony PCR of pCPC-3031-Ni-13-19-15 was performed with 12 colonies.
    2.Three colonies were proved to be true. And two of them were used to inoculate overnight cultures.

      Sep.26th

    Plasmids pT-13-19-15 were handed in for sequencing, which confirmed its correctness.
    The sequencing results for them were correct.

  • Show More
    info_outline
    Notice: This page is currently under construction. Contents in this page are temporaory and will be modified several times before the final release.     — 2016 iGEM Team Tianjin


    Team Tianjin Sponsor Alltech
    Team Tianjin Sponsor GenScript
    Team Tianjin Sponsor SynbioTech