Difference between revisions of "Team:BostonU/Parts"

 
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<div style = "font-size:300%; padding:75px 50px 3px 50px; text-align:center; color:#0071A7;">The Gemini Library of Parts</div>
  
<p>Welcome to the BostonU Parts Pages. We will keep it brief here, but if you want further information we recommend you visit the various pages associated with our work in the registry.</p>
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<center><img src = "https://static.igem.org/mediawiki/2016/thumb/1/1d/T--BostonU--parts_table.png/800px-T--BostonU--parts_table.png" width = 80% style = "padding:5px 150px 15px 150px;"></center>
  
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<p style = "font-size:150%; padding:5px 150px 15px 150px; color:#0071A7;">Welcome to the BostonU Parts Pages. We have brief descriptions of our parts here, but if you would like more detailed information on the parts associated with Gemini we recommend you visit the corresponding parts pages on the <a href = "http://parts.igem.org/Main_Page" style = "color:blue;">iGEM BioBrick Registry</a>.</p>
  
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We submitted several parts from the Gemini Library to the iGEM Registry, including two of our gRNA expression vectors as basic parts for the <a href = "https://2016.igem.org/Team:BostonU/Medal_Criteria" style = "color:blue;">Bronze Medal requirement</a>. These vectors contain expression elements for gRNA 3 (g3) and gRNA 8 (g8) respectively. <a href = "http://parts.igem.org/Part:BBa_K1875011" style = "color:blue;">BBa_K1875011</a> expresses g3, a gRNA that directly recognizes the 20-nt target sequence 5’-AATGAACCTATTCGTACCGT-3’. This sequence can be found in part <a href = "http://parts.igem.org/Part:BBa_K1875004" style = "color:blue;">BBa_K1875004</a>. <a href = "http://parts.igem.org/Part:BBa_K1875012" style = "color:blue;">BBa_K1875012</a> expresses g8, a gRNA that directly recognizes the 20-nt target sequence 5’-GTTGCGCGTCCGTATCAAGG-3’. This sequence can be found in part <a href = "http://parts.igem.org/Part:BBa_K1875006" style = "color:blue;">BBa_K1875006</a>.</p>
  
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<p style = "font-size:150%; padding:5px 150px 15px 150px; color:#0071A7;">In addition to the Bronze Medal parts, we submitted a selection of our gRNA operator reporters as composite parts for<a href = "https://2016.igem.org/Team:BostonU/Medal_Criteria" style = "color:blue;">Silver Medal consideration</a>. We chose to submit the four single operator reporters that were used in our genetic circuits: <a href = "http://parts.igem.org/Part:BBa_K1875013" style = "color:blue;">BBa_K1875013</a>, <a href = "http://parts.igem.org/Part:BBa_K1875014" style = "color:blue;">BBa_K1875014</a>, <a href = "http://parts.igem.org/Part:BBa_K1875015" style = "color:blue;">BBa_K1875015</a>, <a href = "http://parts.igem.org/Part:BBa_K1875016" style = "color:blue;">BBa_K1875016</a>. We also submitted our strongest double and triple mulitmerizered operators, <a href = "http://parts.igem.org/Part:BBa_K1875017" style = "color:blue;">BBa_K1875017</a> and <a href = "http://parts.igem.org/Part:BBa_K1875018" style = "color:blue;">BBa_K1875018</a>, respectively. Finally, we submitted our weakest mutated operator reporter, <a href = "http://parts.igem.org/Part:BBa_K1875019" style = "color:blue;">BBa_K1875019</a>. All of these operators sit upstream of a minimal CMV promoter and regulate expression of GFP.</p>
We at BostonU decided to submit several parts from the Gemini Library. First we submitted two guide RNA expressing vectors. Designated as BBa_K1875011 and BBa_K1875012, containing the target sequence for guide RNAs 3 and 8 respectively. These parts represent our Bronze Medal part submission. </p>
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Because our parts for the Silver Medal requirement are considered “composite parts”, we needed to create a collection of basic parts pages on the BioBrick Registry. These parts include the minimal CMV promoter, a Kozak sequence, a Rabbit Beta Globin Poly A terminator, a green fluorescent protein (GFP), and the individual target sequences for our gRNA expression vectors and operator reporters. These parts have the ID numbers <a href = "http://parts.igem.org/Part:BBa_K1875000" style = "color:blue;">BBa_K1875000</a> through <a href = "http://parts.igem.org/Part:BBa_K1875010" style = "color:blue;">BBa_K1875010</a>. These parts were not physically submitted as samples to the iGEM Registry; however, their sequences and additional information can be found on their respective Registry pages.</p>
 
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<p>In addition to the Bronze Medal parts, we submitted a selection of guide RNA operator reporters for Silver Medal consideration. Those parts include BBa_K1875013 (single site with guide 1), BBa_K1875014 (single site with guide 3), BBa_K1875015 (single site with guide 8), BBa_K1875016 (single site with guide 13), BBa_K1875017 (double site with guide 13), BBa_K1875018 (triple site with guide 13), BBa_K1875019 (mutated guide 13).
 
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The above parts are all considered composite parts, and thus a collection of basic parts was pages was created on the Registry. These include the various target sequences, the minimal CMV promoter, a Kozak sequence, a GFP protein, and a Rabbit Beta Globin Poly A terminator. These parts have the ID numbers BBa_K1875000 - BBa_K1875010. These parts do not have samples in the registry, but their sequences are all available on their respective Registry pages. </p>
 
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Latest revision as of 03:07, 18 October 2016

The Gemini Library of Parts



Welcome to the BostonU Parts Pages. We have brief descriptions of our parts here, but if you would like more detailed information on the parts associated with Gemini we recommend you visit the corresponding parts pages on the iGEM BioBrick Registry.

We submitted several parts from the Gemini Library to the iGEM Registry, including two of our gRNA expression vectors as basic parts for the Bronze Medal requirement. These vectors contain expression elements for gRNA 3 (g3) and gRNA 8 (g8) respectively. BBa_K1875011 expresses g3, a gRNA that directly recognizes the 20-nt target sequence 5’-AATGAACCTATTCGTACCGT-3’. This sequence can be found in part BBa_K1875004. BBa_K1875012 expresses g8, a gRNA that directly recognizes the 20-nt target sequence 5’-GTTGCGCGTCCGTATCAAGG-3’. This sequence can be found in part BBa_K1875006.

In addition to the Bronze Medal parts, we submitted a selection of our gRNA operator reporters as composite parts forSilver Medal consideration. We chose to submit the four single operator reporters that were used in our genetic circuits: BBa_K1875013, BBa_K1875014, BBa_K1875015, BBa_K1875016. We also submitted our strongest double and triple mulitmerizered operators, BBa_K1875017 and BBa_K1875018, respectively. Finally, we submitted our weakest mutated operator reporter, BBa_K1875019. All of these operators sit upstream of a minimal CMV promoter and regulate expression of GFP.

Because our parts for the Silver Medal requirement are considered “composite parts”, we needed to create a collection of basic parts pages on the BioBrick Registry. These parts include the minimal CMV promoter, a Kozak sequence, a Rabbit Beta Globin Poly A terminator, a green fluorescent protein (GFP), and the individual target sequences for our gRNA expression vectors and operator reporters. These parts have the ID numbers BBa_K1875000 through BBa_K1875010. These parts were not physically submitted as samples to the iGEM Registry; however, their sequences and additional information can be found on their respective Registry pages.