Difference between revisions of "Team:BostonU/Parts"

 
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<div style = "font-size:300%; padding:75px 50px 3px 50px; text-align:center; color:#0071A7;">The Gemini Library of Parts</div>
  
<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
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<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
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<center><img src = "https://static.igem.org/mediawiki/2016/thumb/1/1d/T--BostonU--parts_table.png/800px-T--BostonU--parts_table.png" width = 80% style = "padding:5px 150px 15px 150px;"></center>
  
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<p style = "font-size:150%; padding:5px 150px 15px 150px; color:#0071A7;">Welcome to the BostonU Parts Pages. We have brief descriptions of our parts here, but if you would like more detailed information on the parts associated with Gemini we recommend you visit the corresponding parts pages on the <a href = "http://parts.igem.org/Main_Page" style = "color:blue;">iGEM BioBrick Registry</a>.</p>
  
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We submitted several parts from the Gemini Library to the iGEM Registry, including two of our gRNA expression vectors as basic parts for the <a href = "https://2016.igem.org/Team:BostonU/Medal_Criteria" style = "color:blue;">Bronze Medal requirement</a>. These vectors contain expression elements for gRNA 3 (g3) and gRNA 8 (g8) respectively. <a href = "http://parts.igem.org/Part:BBa_K1875011" style = "color:blue;">BBa_K1875011</a> expresses g3, a gRNA that directly recognizes the 20-nt target sequence 5’-AATGAACCTATTCGTACCGT-3’. This sequence can be found in part <a href = "http://parts.igem.org/Part:BBa_K1875004" style = "color:blue;">BBa_K1875004</a>. <a href = "http://parts.igem.org/Part:BBa_K1875012" style = "color:blue;">BBa_K1875012</a> expresses g8, a gRNA that directly recognizes the 20-nt target sequence 5’-GTTGCGCGTCCGTATCAAGG-3’. This sequence can be found in part <a href = "http://parts.igem.org/Part:BBa_K1875006" style = "color:blue;">BBa_K1875006</a>.</p>
  
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<p style = "font-size:150%; padding:5px 150px 15px 150px; color:#0071A7;">In addition to the Bronze Medal parts, we submitted a selection of our gRNA operator reporters as composite parts for<a href = "https://2016.igem.org/Team:BostonU/Medal_Criteria" style = "color:blue;">Silver Medal consideration</a>. We chose to submit the four single operator reporters that were used in our genetic circuits: <a href = "http://parts.igem.org/Part:BBa_K1875013" style = "color:blue;">BBa_K1875013</a>, <a href = "http://parts.igem.org/Part:BBa_K1875014" style = "color:blue;">BBa_K1875014</a>, <a href = "http://parts.igem.org/Part:BBa_K1875015" style = "color:blue;">BBa_K1875015</a>, <a href = "http://parts.igem.org/Part:BBa_K1875016" style = "color:blue;">BBa_K1875016</a>. We also submitted our strongest double and triple mulitmerizered operators, <a href = "http://parts.igem.org/Part:BBa_K1875017" style = "color:blue;">BBa_K1875017</a> and <a href = "http://parts.igem.org/Part:BBa_K1875018" style = "color:blue;">BBa_K1875018</a>, respectively. Finally, we submitted our weakest mutated operator reporter, <a href = "http://parts.igem.org/Part:BBa_K1875019" style = "color:blue;">BBa_K1875019</a>. All of these operators sit upstream of a minimal CMV promoter and regulate expression of GFP.</p>
  
 
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Because our parts for the Silver Medal requirement are considered “composite parts”, we needed to create a collection of basic parts pages on the BioBrick Registry. These parts include the minimal CMV promoter, a Kozak sequence, a Rabbit Beta Globin Poly A terminator, a green fluorescent protein (GFP), and the individual target sequences for our gRNA expression vectors and operator reporters. These parts have the ID numbers <a href = "http://parts.igem.org/Part:BBa_K1875000" style = "color:blue;">BBa_K1875000</a> through <a href = "http://parts.igem.org/Part:BBa_K1875010" style = "color:blue;">BBa_K1875010</a>. These parts were not physically submitted as samples to the iGEM Registry; however, their sequences and additional information can be found on their respective Registry pages.</p>
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<h5>Note</h5>
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<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
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<h5>Adding parts to the registry</h5>
 
<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
 
<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
 
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<h5>What information do I need to start putting my parts on the Registry?</h5>
 
<p>The information needed to initially create a part on the Registry is:</p>
 
<ul>
 
<li>Part Name</li>
 
<li>Part type</li>
 
<li>Creator</li>
 
<li>Sequence</li>
 
<li>Short Description (60 characters on what the DNA does)</li>
 
<li>Long Description (Longer description of what the DNA does)</li>
 
<li>Design considerations</li>
 
</ul>
 
 
<p>
 
We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
 
 
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<h5>Inspiration</h5>
 
<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
 
 
<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
 
<ul>
 
<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
 
<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
 
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
 
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<h5>Part Table </h5>
 
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<groupparts>iGEM2016 Example</groupparts>
 
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Latest revision as of 03:07, 18 October 2016

The Gemini Library of Parts



Welcome to the BostonU Parts Pages. We have brief descriptions of our parts here, but if you would like more detailed information on the parts associated with Gemini we recommend you visit the corresponding parts pages on the iGEM BioBrick Registry.

We submitted several parts from the Gemini Library to the iGEM Registry, including two of our gRNA expression vectors as basic parts for the Bronze Medal requirement. These vectors contain expression elements for gRNA 3 (g3) and gRNA 8 (g8) respectively. BBa_K1875011 expresses g3, a gRNA that directly recognizes the 20-nt target sequence 5’-AATGAACCTATTCGTACCGT-3’. This sequence can be found in part BBa_K1875004. BBa_K1875012 expresses g8, a gRNA that directly recognizes the 20-nt target sequence 5’-GTTGCGCGTCCGTATCAAGG-3’. This sequence can be found in part BBa_K1875006.

In addition to the Bronze Medal parts, we submitted a selection of our gRNA operator reporters as composite parts forSilver Medal consideration. We chose to submit the four single operator reporters that were used in our genetic circuits: BBa_K1875013, BBa_K1875014, BBa_K1875015, BBa_K1875016. We also submitted our strongest double and triple mulitmerizered operators, BBa_K1875017 and BBa_K1875018, respectively. Finally, we submitted our weakest mutated operator reporter, BBa_K1875019. All of these operators sit upstream of a minimal CMV promoter and regulate expression of GFP.

Because our parts for the Silver Medal requirement are considered “composite parts”, we needed to create a collection of basic parts pages on the BioBrick Registry. These parts include the minimal CMV promoter, a Kozak sequence, a Rabbit Beta Globin Poly A terminator, a green fluorescent protein (GFP), and the individual target sequences for our gRNA expression vectors and operator reporters. These parts have the ID numbers BBa_K1875000 through BBa_K1875010. These parts were not physically submitted as samples to the iGEM Registry; however, their sequences and additional information can be found on their respective Registry pages.