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        <h1>Human Practices</h1>
<h3> Lymes Disease </h3>
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<img src="https://static.igem.org/mediawiki/2016/5/5c/WarwickiGEM2016MapOf_LymesDisease.jpeg" alt="Map of Lymes' Disease US" style="width:500px;height:380px;">
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<p>Lymes disease is the most common vector-borne human infection in England and Wales, caused by bites from ticks containing the bacteria Borrelia burgdoferi. These ticks are found throughout the UK, in Northern and Central Europe and North America, commonly in woodland and heathland areas. Approximately 30,000 cases are reported to the Centres for Disease Control and Prevention (CDC) in the U.S every year, however it is estimated that 300,000 people contract the disease and are not reported <sup>[1]</sup>. There are 2000-3000 newly confirmed cases in the U.K each year, with 15% being contracted abroad <sup>[2]</sup>. Our project will help to diagnose people who have the disease early enough to prevent irreversible and life-long damage to their body.</p>
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<p>Oral antibiotics are prescribed when Lymes disease is suspected, due to presence of a circular expanding rash. To confirm presence of disease, antibody screening and immunoblotting is completed. However, these blood tests take weeks and can show a negative result in early stages of the disease <sup>[3]</sup>.</p>
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            <h2>Summary</h2>
<p>Our novel system aims to help diagnose Lymes disease at its early stage to increase the likelihood of successful treatment. To confirm presence of disease, antibody screening and immunoblotting is completed. However, these blood tests take weeks and can show a negative result in early stages of the disease. Treatment with antibiotics can be effective, if the disease is detected early, so our novel system aims to help diagnose Lymes disease at its early stage to increase the likelihood of successful treatment.</p>
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<p>The development of a paper based technology will allow easy world-wide transport, storage and usage of our biosensor. This can be implemented in developed countries, through health services (e.g. NHS in the UK), and in developing countries, through the form of foreign aid and aid workers. For other diagnosis tests a laboratory is required, however our paper based biosensor does not need this. This results in the product being commercially available to everyone as, once freeze dried, it can be stored in a dry environment indefinitely.</p>
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              <p> Originally, the Warwick IGEM team were aiming to tackle the issue of Lyme disease diagnosis using our modular CRISPR based RNA detection system. However, over the course of the project, we were faced with difficult problems in the application and feasibility of our system, with regards to detecting Borrelia. It was originally considered that, as Borrelia burgdorferi is present in the blood immediately after infection, our blood test kit would be an effective front-line method for disease detection after a tick bite. Having surveyed the areas most at risk of contracting the disease in Britain, and realising the extent of public lack of awareness, attempting to manufacture a product requiring self-testing would be difficult, as few people would have adequate knowledge as to how to test themselves. Under these circumstances, it appears most appropriate to develop our test for doctors, however as current NICE guidelines for Lyme disease are still being confirmed, generating a standardised test in a first world country would be a long term endeavour.<br /><br />Furthermore, after attending the Lyme Disease Action conference in Cambridge and speaking to Tim Brooks, head of the Rare and Import Pathogens Laboratory  (RIPL), we established that although the average amount of Borrelia in the blood stream was capable of detection by PCR screening techniques, it would be difficult to detect using our RNA detection system without using additional amplification techniques which may alter the accuracy of the test.<br /><br />This initial setback invigorated the team in pursuing other avenues of application for our system, that would both be viable in the real world and have a significant impact on the quality of human life. We opted to change our sensing target to leptospirosis, which similarly to Lyme disease is a spirochetal infection. Leptospirosis is a disease for which a cheap, stable detection system would be very useful, given it’s prevalence in southeast Asia, and the high frequency with which it is transported back to Britain by travelling tourists – it is the second most common foreign disease in the UK.<br /><br />The Leptospira bacteria responsible for leptospirosis are present in the blood in sufficient quantity post-infection to be detected by our system. Current methods for testing for leptospirosis require expensive maintenance of stocks of the bacteria in hospitals, whereas most infections occur in poor areas with limited access to hospitals, or anything larger than poorly supplied clinics. This makes our device, the paper mounted sensor, perfect for use in this context. The low cost nature of our device improves accessibility to poorer communities, with the simple storage conditions required making our construct easy to store and transport. This allows our detection technology to benefit communities in hard to reach places.  The only knowledge required to our self-test device is the safe collection of blood samples, with diagnosis being a very quick process with a clear distinction between positive and negative results. After having been diagnosed through the use of the device, access to treatment is more difficult in more inaccessible areas.</p>
 
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<h3> Heavy Metal Poisoning </h3>
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<p>Heavy metal poisoning occurs when toxic amounts of metals such as lead, mercury, arsenic or cadmium accumulates in soft tissues of the body due to exposure, such as ingestion of contaminated food or water, in medicines or occupational exposure. The effects depend on age of exposure and level of exposure. Many systems in the body may be effected and in some cases, symptoms may be life-threatening. Diagnosis may be based on clinical symptoms or blood tests for example for the presence of lead. We aim to design a modular system which can be adapted to recognise and indicate the presence of various metals which could cause heavy metal poisoning. </p>
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<p>In just a single year lead exposure will kill 143,000 people, intellectually disable 600,000 children and will trigger 750,000 strokes <sup>[6, 7]</sup>. The majority of these cases are within developing countries. Over 500,000 children each year suffer from loss of IQ associated with excessive mercury uptake. The loss of productivity caused by the symptoms associated with mercury poisoning results in a significant economic loss of $ 8.7 billion annually <sup>[8]</sup>.</p>
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<p>Our team have chosen to develop a system capable of detecting these ions in water sources, potentially improving the quality of human life on a global scale, in an inexpensive easily accessible manner.</p>
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                <p>We thankfully acknowledge generous funding support from our sponsors below.</p>
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Latest revision as of 03:04, 20 October 2016

iGEM Warwick 2016 - Human Practices

Summary

Originally, the Warwick IGEM team were aiming to tackle the issue of Lyme disease diagnosis using our modular CRISPR based RNA detection system. However, over the course of the project, we were faced with difficult problems in the application and feasibility of our system, with regards to detecting Borrelia. It was originally considered that, as Borrelia burgdorferi is present in the blood immediately after infection, our blood test kit would be an effective front-line method for disease detection after a tick bite. Having surveyed the areas most at risk of contracting the disease in Britain, and realising the extent of public lack of awareness, attempting to manufacture a product requiring self-testing would be difficult, as few people would have adequate knowledge as to how to test themselves. Under these circumstances, it appears most appropriate to develop our test for doctors, however as current NICE guidelines for Lyme disease are still being confirmed, generating a standardised test in a first world country would be a long term endeavour.

Furthermore, after attending the Lyme Disease Action conference in Cambridge and speaking to Tim Brooks, head of the Rare and Import Pathogens Laboratory (RIPL), we established that although the average amount of Borrelia in the blood stream was capable of detection by PCR screening techniques, it would be difficult to detect using our RNA detection system without using additional amplification techniques which may alter the accuracy of the test.

This initial setback invigorated the team in pursuing other avenues of application for our system, that would both be viable in the real world and have a significant impact on the quality of human life. We opted to change our sensing target to leptospirosis, which similarly to Lyme disease is a spirochetal infection. Leptospirosis is a disease for which a cheap, stable detection system would be very useful, given it’s prevalence in southeast Asia, and the high frequency with which it is transported back to Britain by travelling tourists – it is the second most common foreign disease in the UK.

The Leptospira bacteria responsible for leptospirosis are present in the blood in sufficient quantity post-infection to be detected by our system. Current methods for testing for leptospirosis require expensive maintenance of stocks of the bacteria in hospitals, whereas most infections occur in poor areas with limited access to hospitals, or anything larger than poorly supplied clinics. This makes our device, the paper mounted sensor, perfect for use in this context. The low cost nature of our device improves accessibility to poorer communities, with the simple storage conditions required making our construct easy to store and transport. This allows our detection technology to benefit communities in hard to reach places. The only knowledge required to our self-test device is the safe collection of blood samples, with diagnosis being a very quick process with a clear distinction between positive and negative results. After having been diagnosed through the use of the device, access to treatment is more difficult in more inaccessible areas.