Difference between revisions of "Team:BostonU/Basic Part"

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<h3>★  ALERT! </h3>
 
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<p>This page is used by the judges to evaluate your team for the <a href="https://2016.igem.org/Judging/Awards#Special_Prizes">basic part special prize</a>. </p>
 
  
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<p> Delete this box in order to be evaluated for this medal. See more information at <a href="https://2016.igem.org/Judging/Pages_for_Awards/Instructions"> Instructions for Pages for awards</a>.</p>
 
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<div style = "font-size:300%; padding:75px 50px 3px 50px; text-align:center; color:#0071A7;">Best New Basic Part</div>
  
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A <b>basic part</b> is a functional unit of DNA that cannot be subdivided into smaller component parts. <a href="http://parts.igem.org/wiki/index.php/Part:BBa_R0051">BBa_R0051</a> is an example of a basic part, a promoter regulated by lambda cl.
 
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<p>Most genetically-encoded functions have not yet been converted to BioBrick parts. Thus, there are <b>many</b> opportunities to find new, cool, and important genetically encoded functions, and refine and convert the DNA encoding these functions into BioBrick standard biological parts. </p>
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<p style = "font-size:200%; font-family:Trebuchet MS; padding:5px 200px 15px 200px; color:#760E18;">The 2016 BostonU iGEM team was a nominee for the Best Basic Part Award.</p>
  
  
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<p style = "font-size:150%; padding:5px 150px 15px 150px; color:#0071A7;">To create the Gemini parts library, we made use of two “classes” of plasmids: guide RNA expressing vectors and guide RNA operator reporter vectors. When these two plasmids are co-transfected with a dCas9-VPR plasmid into a mammalian cell line, a gene of interest is expressed. Our work for iGEM dealt with fluorescent proteins; specifically, GFP for the parts submitted to the registry. </p>
  
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The guide RNA expressing vector can be considered a basic part. Its design consists of a hU6 promoter upstream of a guide RNA sequence, which has a target recognition sequence and a scaffold sequence for dCas9 binding, followed by a polyT terminator. This basic part, whose data can be found on <a href = "http://parts.igem.org/Part:BBa_K1875012" style = "color:blue;">BBa_K1875012</a>, was based off of the work by Feng Zhang at MIT and the x330 plasmid. Our part here expresses gRNA 8 (g8) from the Gemini parts library. It represents what we feel is one of best basic parts in our library due to its consistency in experimentation.
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<h4>Note</h4>
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<p>This page should list all the basic parts your team has made during your project. You must add all characterization information for your parts on the Registry. You should not put characterization information on this page.</p>
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Latest revision as of 03:32, 2 December 2016

Best New Basic Part


The 2016 BostonU iGEM team was a nominee for the Best Basic Part Award.

To create the Gemini parts library, we made use of two “classes” of plasmids: guide RNA expressing vectors and guide RNA operator reporter vectors. When these two plasmids are co-transfected with a dCas9-VPR plasmid into a mammalian cell line, a gene of interest is expressed. Our work for iGEM dealt with fluorescent proteins; specifically, GFP for the parts submitted to the registry.

The guide RNA expressing vector can be considered a basic part. Its design consists of a hU6 promoter upstream of a guide RNA sequence, which has a target recognition sequence and a scaffold sequence for dCas9 binding, followed by a polyT terminator. This basic part, whose data can be found on BBa_K1875012, was based off of the work by Feng Zhang at MIT and the x330 plasmid. Our part here expresses gRNA 8 (g8) from the Gemini parts library. It represents what we feel is one of best basic parts in our library due to its consistency in experimentation.