Difference between revisions of "Team:Edinburgh UG/Files"

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                  <button type="button" class="navbar-toggle" data-toggle="collapse" data-target="#bs-example-navbar-collapse-1">
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                          <span class="sr-only">Toggle navigation</span>
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                      <span class="sr-only">Toggle navigation</span>
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                      <span class="icon-bar"></span>
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                  <a class="navbar-brand" href="https://2016.igem.org/Team:Edinburgh_UG">
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                          <img src="https://static.igem.org/mediawiki/2016/9/92/Edinburgh_logo2_MINI.png" alt="">
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                      <img src="https://static.igem.org/mediawiki/2016/9/92/Edinburgh_logo2_MINI.png" alt="">
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                              <a href="https://2016.igem.org/Team:Edinburgh_UG">Home</a>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Team">Team</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Attribution">Attribution</a></li>
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                            </ul>
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                          </li>
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                            <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Human Practices<span class="caret"></span></a>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Silver">Silver</a> </li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Gold">Gold</a> </li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Integrated_Practices">Integrated Practices</a> </li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Engagement">Engagement</a> </li>
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                            </ul>
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                          </li>
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                          <li class="dropdown">
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                            <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Project<span class="caret"></span></a>
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                            <ul class="dropdown-menu" role="menu">
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Description">Description</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Design">Design</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Proof">Proof of Concept</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Demonstrate">Demonstrate</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Notebook">Notebook</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Babbled2.0">Babbled2.0</a></li>
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                            </ul>
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                          </li>
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                          <li class="dropdown">
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                            <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Informatics<span class="caret"></span></a>
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                            <ul class="dropdown-menu" role="menu">
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Lexicon_Encoding">Lexicon Encoding</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Error_Correction">Error Correction</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Encryption">Encryption</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Files">Files</a></li>
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                            </ul>
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                          </li>
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                          <li class="dropdown">
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                            <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Parts<span class="caret"></span></a>
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                            <ul class="dropdown-menu" role="menu">
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Basic_Part">Basic Parts</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Composite_Part">Composite Parts</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Part_Collection">Part Collection</a> </li>
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                            </ul>
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                          </li>
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                          <li>
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                              <a href="#">Collaboration</a>
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                          </li>
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                          <li class="dropdown">
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                            <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Awards<span class="caret"></span></a>
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                            <ul class="dropdown-menu" role="menu">
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Entrepreneurship">Entrepreneurship</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Software">Software</a> </li>
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                            </ul>
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                          </li>
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−
                          <li class="dropdown">
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                            <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Safety<span class="caret"></span></a>
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                            <ul class="dropdown-menu" role="menu">
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Safety">Lab Safety</a></li>
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Biological Safety">Biological Safety</a></li>
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                            </ul>
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                          </li>
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                          <li class="dropdown">
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                            <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Interlab<span class="caret"></span></a>
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                            <ul class="dropdown-menu" role="menu">
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                              <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Plate_Reader">Plate Reader</a></li>
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                            </ul>
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                          </li>
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                      </ul>
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               </div>
 
               </div>
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          </nav>
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               <!-- Collect the nav links, forms, and other content for toggling -->
−
        </div>
+
              <div class="collapse navbar-collapse" id="bs-example-navbar-collapse-1">
 +
                  <ul class="nav navbar-nav">
 +
                      <li>
 +
                          <a href="https://2016.igem.org/Team:Edinburgh_UG">Home</a>
 +
                      </li>
 +
                      <li class="dropdown">
 +
                        <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Team<span class="caret"></span></a>
 +
                        <ul class="dropdown-menu" role="menu">
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Team">Team</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Attribution">Attribution</a></li>
 +
                        </ul>
 +
                      </li>
 +
                      <li class="dropdown">
 +
                        <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Human Practices<span class="caret"></span></a>
 +
                        <ul class="dropdown-menu" role="menu">
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Overview">Overview</a> </li>
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                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/HP/Silver">Silver</a> </li>
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                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/HP/Gold">Gold</a> </li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Integrated_Practices">Integrated Practices</a> </li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Engagement">Engagement</a> </li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Ethics">Ethics</a> </li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Mary_Queen_of _Scots">Mary Queen of Scots</a> </li>
 +
                        </ul>
 +
                      </li>
 +
                      <li class="dropdown">
 +
                        <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Project<span class="caret"></span></a>
 +
                        <ul class="dropdown-menu" role="menu">
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Description">Description</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Design">Design</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Proof">Proof of Concept</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Demonstrate">Demonstrate</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Notebook">Notebook</a></li>
 +
                        </ul>
 +
                      </li>
 +
                      <li class="dropdown">
 +
                        <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Informatics<span class="caret"></span></a>
 +
                        <ul class="dropdown-menu" role="menu">
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Lexicon_Encoding">Lexicon Encoding</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Error_Correction">Error Correction</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Encryption">Encryption</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Files">Files</a></li>
 +
                        </ul>
 +
                      </li>
 +
                      <li class="dropdown">
 +
                        <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Parts<span class="caret"></span></a>
 +
                        <ul class="dropdown-menu" role="menu">
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Basic_Part">Basic Parts</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Composite_Part">Composite Parts</a></li>
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Part_Collection">Part Collection</a> </li>
 +
                        </ul>
 +
                      </li>
 +
                      <li>
 +
                          <a href="https://2016.igem.org/Team:Edinburgh_UG/Collaboration">Collaboration</a>
 +
                      </li>
 +
                      <li class="dropdown">
 +
                        <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Awards<span class="caret"></span></a>
 +
                        <ul class="dropdown-menu" role="menu">
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Software">Software</a> </li>
 +
                        </ul>
 +
                      </li>
 +
                      <li class="dropdown">
 +
                        <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Safety<span class="caret"></span></a>
 +
                        <ul class="dropdown-menu" role="menu">
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Safety/Biological Safety">Biological Safety</a></li>
 +
                        </ul>
 +
                      </li>
 +
                      <li class="dropdown">
 +
                        <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Interlab<span class="caret"></span></a>
 +
                        <ul class="dropdown-menu" role="menu">
 +
                          <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Plate_Reader">Plate Reader</a></li>
 +
                        </ul>
 +
                      </li>
 +
                  </ul>
 +
              </div>
 +
              <!-- /.navbar-collapse -->
 +
          </div>
 +
          <!-- /.container -->
 +
      </nav>
 
     </div>
 
     </div>
 +
</div>
  
  

Revision as of 14:26, 19 October 2016

Here you can find zip files containing all the code for the BabblED software along with handy documentation about how to install the programs. Alternatively all the code is also available completely open source on our Githubor if you would just like to see the software in action head over to our software page to watch our demo video.

All the files below were written in Python 2.7 and also require the SciPy stack. For Windows and Mac users we recommend to install Anaconda- "a leading data science platform powered by Python" in order to run the programs. Linux users will simply need to install the SciPy Stack

Here you can download a zip containing all the files essential to the main BabblED software, simply unpack the zip and run gui.py inside to get started:

Distributable
EdiGEM16UG Distributable.zip

Here you can download zips containing the files for each section of code that we have written:

Lexicon Encoding and Decoding
EdiGEM16UG Lexicon Encoding and Decoding Code.zip
Error Correction
EdiGEM16UG Lexicon Encoding and Decoding Code.zip
General Bioinformatics
EdiGEM16UG General Bioinformatics Code.zip
Encryption
EdiGEM16UG Encryption Code.zip
Modelling
EdiGEM16UG Modelling Code.zip
User Interface
EdiGEM16UG User Interface Code.zip

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