Difference between revisions of "Team:Edinburgh UG/Files"
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</style> | </style> | ||
| − | + | <div id="custom-bootstrap-menu" class="navbar navbar-default navbar-fixed-top" role="navigation"> | |
| − | + | <div class= "container-fluid"> | |
| − | + | <!-- Navigation --> | |
| − | + | <nav class="navbar navbar-inverse navbar-fixed-top" role="navigation"> | |
| − | + | <div class="container"> | |
| − | + | <!-- Brand and toggle get grouped for better mobile display --> | |
| − | + | <div class="navbar-header"> | |
| − | + | <button type="button" class="navbar-toggle" data-toggle="collapse" data-target="#bs-example-navbar-collapse-1"> | |
| − | + | <span class="sr-only">Toggle navigation</span> | |
| − | + | <span class="icon-bar"></span> | |
| − | + | <span class="icon-bar"></span> | |
| − | + | <span class="icon-bar"></span> | |
| − | + | </button> | |
| − | + | <a class="navbar-brand" href="https://2016.igem.org/Team:Edinburgh_UG"> | |
| − | + | <img src="https://static.igem.org/mediawiki/2016/9/92/Edinburgh_logo2_MINI.png" alt=""> | |
| − | + | </a> | |
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</div> | </div> | ||
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| + | <!-- Collect the nav links, forms, and other content for toggling --> | ||
| + | <div class="collapse navbar-collapse" id="bs-example-navbar-collapse-1"> | ||
| + | <ul class="nav navbar-nav"> | ||
| + | <li> | ||
| + | <a href="https://2016.igem.org/Team:Edinburgh_UG">Home</a> | ||
| + | </li> | ||
| + | <li class="dropdown"> | ||
| + | <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Team<span class="caret"></span></a> | ||
| + | <ul class="dropdown-menu" role="menu"> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Team">Team</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Attribution">Attribution</a></li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | <li class="dropdown"> | ||
| + | <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Human Practices<span class="caret"></span></a> | ||
| + | <ul class="dropdown-menu" role="menu"> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Overview">Overview</a> </li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/HP/Silver">Silver</a> </li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/HP/Gold">Gold</a> </li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Medal_Criteria">Medal Criteria</a> </li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Integrated_Practices">Integrated Practices</a> </li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Engagement">Engagement</a> </li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Ethics">Ethics</a> </li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Mary_Queen_of _Scots">Mary Queen of Scots</a> </li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | <li class="dropdown"> | ||
| + | <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Project<span class="caret"></span></a> | ||
| + | <ul class="dropdown-menu" role="menu"> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Description">Description</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Design">Design</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Proof">Proof of Concept</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Demonstrate">Demonstrate</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Notebook">Notebook</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Protocols">Protocols</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Limitations">Advantages and Limitations</a></li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | <li class="dropdown"> | ||
| + | <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Informatics<span class="caret"></span></a> | ||
| + | <ul class="dropdown-menu" role="menu"> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Lexicon_Encoding">Lexicon Encoding</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Error_Correction">Error Correction</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Encryption">Encryption</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Files">Files</a></li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | <li class="dropdown"> | ||
| + | <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Parts<span class="caret"></span></a> | ||
| + | <ul class="dropdown-menu" role="menu"> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Basic_Part">Basic Parts</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Composite_Part">Composite Parts</a></li> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Part_Collection">Part Collection</a> </li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | <li> | ||
| + | <a href="https://2016.igem.org/Team:Edinburgh_UG/Collaboration">Collaboration</a> | ||
| + | </li> | ||
| + | <li class="dropdown"> | ||
| + | <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Awards<span class="caret"></span></a> | ||
| + | <ul class="dropdown-menu" role="menu"> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Software">Software</a> </li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | <li class="dropdown"> | ||
| + | <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Safety<span class="caret"></span></a> | ||
| + | <ul class="dropdown-menu" role="menu"> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Safety/Biological Safety">Biological Safety</a></li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | <li class="dropdown"> | ||
| + | <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Interlab<span class="caret"></span></a> | ||
| + | <ul class="dropdown-menu" role="menu"> | ||
| + | <li><a href="https://2016.igem.org/Team:Edinburgh_UG/Plate_Reader">Plate Reader</a></li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | </ul> | ||
| + | </div> | ||
| + | <!-- /.navbar-collapse --> | ||
| + | </div> | ||
| + | <!-- /.container --> | ||
| + | </nav> | ||
| + | </div> | ||
| + | </div> | ||
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<div class="col-sm-3"></div> | <div class="col-sm-3"></div> | ||
<div class="col-sm-6"> | <div class="col-sm-6"> | ||
| − | <centre style="font-size:160%;">Here you can find zip files containing all the code for the BabblED software along with handy documentation about how to install the programs. Alternatively all the code is also available completely open source on our <a href="https://github.com/Edinburgh-iGEM2016/" target="_self">Github</a></centre> | + | <centre style="font-size:160%;">Here you can find zip files containing all the code for the BabblED software along with handy documentation about how to install the programs. Alternatively all the code is also available completely open source on our <a href="https://github.com/Edinburgh-iGEM2016/" target="_self">Github</a>or if you would just like to see the software in action head over to our <a href="https://2016.igem.org/Team:Edinburgh_UG/Software" target="_self">software</a> page for a walkthrough.</centre> |
</div> | </div> | ||
| + | <div class="col-sm-3"></div> | ||
| + | </div> | ||
| + | </div> | ||
| + | |||
| + | <div class="container-fluid"> | ||
| + | <div class="row full-size"> | ||
| + | <div class="col-sm-3"></div> | ||
| + | <div class="col-sm-6"> | ||
| + | <p></p> | ||
| + | <centre style="font-size:160%;">All the files below were written in Python 2.7 and also require the SciPy stack. For Windows and Mac users we recommend to install <a href="https://www.continuum.io/downloads" target="_self">Anaconda</a>- "a leading data science platform powered by Python" in order to run the programs. Linux users will simply need to install the <a href="https://www.scipy.org/install.html" target="_self">SciPy Stack</a></centre> | ||
| + | </div> | ||
| + | <p></p> | ||
<div class="col-sm-3"></div> | <div class="col-sm-3"></div> | ||
</div> | </div> | ||
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<div class="row"> | <div class="row"> | ||
| − | <div class="col-sm- | + | <div class="col-sm-3"></div> |
| − | <centre style="font-size:160%">Here you can download | + | <div class="col-sm-6"> |
| + | <p></p> | ||
| + | <centre style="font-size:160%">Here you can download a zip containing all the files essential to the main BabblED software, simply unpack the zip and run gui.py inside to get started:</centre> | ||
| + | <p></p> | ||
</div> | </div> | ||
| + | <div class="col-sm-3"></div> | ||
</div> | </div> | ||
<div class="container-fluid"> | <div class="container-fluid"> | ||
<div class="row full-size"> | <div class="row full-size"> | ||
| + | <div class="col-sm-3"></div> | ||
| + | <div class="col-sm-3"> | ||
| + | <centre style="font-size:160%">Distributable</centre> | ||
| + | </div> | ||
| + | <div class="col-sm-4"> | ||
| + | <a href="https://static.igem.org/mediawiki/2016/c/c3/Edigemug16distfin.zip"><centre style="font-size:160%">EdiGEM16UG Distributable.zip</centre></a> | ||
| + | </div> | ||
| + | <div class="col-sm-2"></div> | ||
| + | </div> | ||
| + | </div> | ||
| + | |||
| + | <div class="row"> | ||
| + | <div class="col-sm-3"></div> | ||
<div class="col-sm-6"> | <div class="col-sm-6"> | ||
| + | <p></p> | ||
| + | <centre style="font-size:160%">Here you can download zips containing the files for each section of code that we have written:</centre> | ||
| + | <p></p> | ||
| + | </div> | ||
| + | <div class="col-sm-3"></div> | ||
| + | </div> | ||
| + | |||
| + | <div class="container-fluid"> | ||
| + | <div class="row full-size"> | ||
| + | <div class="col-sm-3"></div> | ||
| + | <div class="col-sm-3"> | ||
<centre style="font-size:160%">Lexicon Encoding and Decoding</centre> | <centre style="font-size:160%">Lexicon Encoding and Decoding</centre> | ||
</div> | </div> | ||
| − | <div class="col-sm- | + | <div class="col-sm-4"> |
| − | <a href="https:// | + | <a href="https://static.igem.org/mediawiki/2016/d/d1/EdiGEM16UG_Lexicon_Encoding_and_Decoding_Code.zip"><centre style="font-size:160%">EdiGEM16UG Lexicon Encoding and Decoding Code.zip</centre></a> |
</div> | </div> | ||
| + | <div class="col-sm-2"></div> | ||
</div> | </div> | ||
</div> | </div> | ||
| + | |||
| + | <div class="container-fluid"> | ||
<div class="row full-size"> | <div class="row full-size"> | ||
| − | <div class="col-sm- | + | <div class="col-sm-3"></div> |
| − | <centre style="font-size:160%"> | + | <div class="col-sm-3"> |
| + | <centre style="font-size:160%">Error Correction</centre> | ||
</div> | </div> | ||
| − | <div class="col-sm- | + | <div class="col-sm-4"> |
| − | <a href="https:// | + | <a href="https://static.igem.org/mediawiki/2016/5/52/EdiGEM16UG_Error_Correction_Code.zip"><centre style="font-size:160%">EdiGEM16UG Lexicon Encoding and Decoding Code.zip</centre></a> |
</div> | </div> | ||
| + | <div class="col-sm-2"></div> | ||
</div> | </div> | ||
</div> | </div> | ||
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<div class="row full-size"> | <div class="row full-size"> | ||
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<centre style="font-size:160%">General Bioinformatics</centre> | <centre style="font-size:160%">General Bioinformatics</centre> | ||
</div> | </div> | ||
| − | <div class="col-sm- | + | <div class="col-sm-4"> |
| − | <a href="https:// | + | <a href="https://static.igem.org/mediawiki/2016/b/b0/EdiGEM16UG_General_Bioinformatics_Code.zip"><centre style="font-size:160%">EdiGEM16UG General Bioinformatics Code.zip</centre></a> |
</div> | </div> | ||
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</div> | </div> | ||
</div> | </div> | ||
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<div class="row full-size"> | <div class="row full-size"> | ||
| − | <div class="col-sm- | + | <div class="col-sm-3"></div> |
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<centre style="font-size:160%">Encryption</centre> | <centre style="font-size:160%">Encryption</centre> | ||
</div> | </div> | ||
| − | <div class="col-sm- | + | <div class="col-sm-3"> |
| − | <a href="https:// | + | <a href="https://static.igem.org/mediawiki/2016/0/09/EdiGEM16UG_Encryption_Code.zip"><centre style="font-size:160%">EdiGEM16UG Encryption Code.zip</centre></a> |
</div> | </div> | ||
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</div> | </div> | ||
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| − | <div class="col-sm- | + | <div class="col-sm-3"></div> |
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<centre style="font-size:160%">Modelling</centre> | <centre style="font-size:160%">Modelling</centre> | ||
</div> | </div> | ||
| − | <div class="col-sm- | + | <div class="col-sm-3"> |
| − | <a href="https:// | + | <a href="https://static.igem.org/mediawiki/2016/a/a2/EdiGEM16UG_Modelling_Code.zip"><centre style="font-size:160%">EdiGEM16UG Modelling Code.zip</centre></a> |
</div> | </div> | ||
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<div class="row full-size"> | <div class="row full-size"> | ||
| − | <div class="col-sm- | + | <div class="col-sm-3"></div> |
| + | <div class="col-sm-3"> | ||
<centre style="font-size:160%">User Interface</centre> | <centre style="font-size:160%">User Interface</centre> | ||
</div> | </div> | ||
| − | <div class="col-sm- | + | <div class="col-sm-3"> |
| − | <a href="https:// | + | <a href="https://static.igem.org/mediawiki/2016/2/26/EdiGEM16UG_User_Interface_Code.zip"><centre style="font-size:160%">EdiGEM16UG User Interface Code.zip</centre></a> |
</div> | </div> | ||
| + | <div class="col-sm-3"></div> | ||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 00:03, 20 October 2016
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