##### Jul. 18/2016

Finished the first edition simulation

##### Jul. 31/2016

Visualize and optimization

NOTE / Model

Notebook - Model

Overview

Input the reaction equation into matlab

Survey the mechanism of how Pl can be regulated by inputted glucose.

Do the theory about how promoter Pl works

Analyze the data of chromoprotein

Find the parameters of U. coli biobricks from other teams (ETHZ and MIT)

Write a matlab code to analyze experimental data automatically

Make a Gif to explain how our gene circuit regulate to each other and how Pl works.

Make a tutorial of QT Grace.

Finish the Overview page of modeling.

Built up the matlab code of U. coli gene circuit that can calculate the compound concentration numerically.

Prepare the presentation for Asia-Pacific Conference.

Prepare the presentation for Asia-Pacific Conference

Asia-Pacific Conference

Start the cooperation with TCU

Analyze the second experimental data from wet lab.

Finish the page of speed modified system.

Find out the formula can’t well fit the experimental data.

Correct the old theory model

Rearrange the structure of the Theory page.

Use the new theory formula to fit the data, discuss about how to decrease the error.

Fitting the original data with poly2, poly3, and the formula of Blackbody radiation, but everything we tried is failed to correct the error.

Finite differencing explicit methods

Finished the first edition simulation

Visualize and optimization

Statistical analysis

Test the first data and find the suitable model by regression

Do the whole statistical inference and prediction

Formula Derivation

Finished the derivation model version.1

Finished the derivation model version.2

Finished the derivation model version.3

Data analysis

Completed the draft of SimBiology in matlab.

Analyze the first experimental data.

Finish the analysis code base on the derivation model version.1

Finish the analysis code base on the derivation model version.2

Try different fitting methods to low down the error of data.

Finish the analysis code base on the derivation model version.3

Finish the program of showing the result that can easily read.