Difference between revisions of "Team:NCKU Tainan/Model"

Line 3: Line 3:
 
   </head>
 
   </head>
 
   <body>
 
   <body>
     <style>@font-face {  font-family: 'NotoSansCJKtc-Regular';  src: url("/wiki/images/0/0b/T--NCKU_Tainan--NotoSansCJKtc-Regular.woff") format('woff');}</style><nav class="navbar navbar-default"><div class="container-fluid" style="width:72%">  <div class="navbar-header">      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">        <span class="sr-only">Toggle navigation</span>        <span class="icon-bar"></span>        <span class="icon-bar"></span>        <span class="icon-bar"></span>      </button>      <a class="navbar-brand" href="/Team:NCKU_Tainan">        <h1>NCKU</h1><h4>Tainan</h4>      </a>  </div>  <div id="navbar" class="navbar-collapse collapse">    <ul class="nav navbar-nav">      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu1" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="">Project</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu2">          <li><a href="/Team:NCKU_Tainan/Project">Overview</a></li>          <li><a href="/Team:NCKU_Tainan/Description">Description</a></li>          <li><a href="/Team:NCKU_Tainan/Results">Results</a></li>          <li><a href="/Team:NCKU_Tainan/Model">Modeling</a></li>          <li><a href="/Team:NCKU_Tainan/Parts">Parts</a></li>        </ul>      </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu2" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="">Device</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu2">          <li><a href="/Team:NCKU_Tainan/Hardware">Hardware</a></li>          <li><a href="/Team:NCKU_Tainan/Software">Software</a></li>          <li><a href="/Team:NCKU_Tainan/Demonstrate">Demonstrate</a></li>        </ul>      </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu3" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="">Judging</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu3">          <li><a href="/Team:NCKU_Tainan/Medal">Medal</a></li>          <li><a href="/Team:NCKU_Tainan/Safety">Safety</a></li>        </ul>        </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu4" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="/Team:NCKU_Tainan/Team">Team</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu4">          <li><a href="/Team:NCKU_Tainan/Team">Team</a></li>          <li><a href="/Team:NCKU_Tainan/Attributions">Attributions</a></li>          <li><a href="/Team:NCKU_Tainan/Acknowledgement">Acknowledgement</a></li>          <li><a href="/Team:NCKU_Tainan/Collaborations">Collaborations</a></li>        </ul>        </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu5" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="/Team:NCKU_Tainan/Human_Practices">Human Practices</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu5">          <li><a href="/Team:NCKU_Tainan/Human_Practices">Overview</a></li>          <li><a href="/Team:NCKU_Tainan/Integrated_Practices">Integrated Practices</a></li>          <li><a href="/Team:NCKU_Tainan/Engagement">Engagement</a></li>        </ul>      </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu6" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="">Notebook</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu6">          <li><a href="/Team:NCKU_Tainan/Notebook_Construction">Construction</a></li>          <li><a href="/Team:NCKU_Tainan/Notebook_Functional_Test">Functional Test</a></li>          <li><a href="/Team:NCKU_Tainan/Notebook_Device_Design">Device Design</a></li>          <li><a href="/Team:NCKU_Tainan/Notebook_Protocols">Protocols</a></li>        </ul>      </li>    </ul>    <ul class="nav navbar-nav navbar-right">    </ul>  </div><!--/.nav-collapse --></div><!--/.container-fluid --></nav><div id="container-big"><div id="iGEMbar"></div><div id="line-left"></div><div id="line-left2"></div><div id="line-right"></div><div id="photo-left"></div></div><!--/.container-big -->        <style>
+
     <style>@font-face {  font-family: 'NotoSansCJKtc-Regular';  src: url("/wiki/images/0/0b/T--NCKU_Tainan--NotoSansCJKtc-Regular.woff") format('woff');}</style><nav class="navbar navbar-default"><div class="container-fluid" style="width:72%">  <div class="navbar-header">      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">        <span class="sr-only">Toggle navigation</span>        <span class="icon-bar"></span>        <span class="icon-bar"></span>        <span class="icon-bar"></span>      </button>      <a class="navbar-brand" href="/Team:NCKU_Tainan">        <h1>NCKU</h1><h4>Tainan</h4>      </a>  </div>  <div id="navbar" class="navbar-collapse collapse">    <ul class="nav navbar-nav">      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu1" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="">Project</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu2">          <li><a href="/Team:NCKU_Tainan/Project">Background</a></li>          <li><a href="/Team:NCKU_Tainan/Description">Description</a></li>          <li><a href="/Team:NCKU_Tainan/Results">Results</a></li>          <li><a href="/Team:NCKU_Tainan/Model">Modeling</a></li>          <li><a href="/Team:NCKU_Tainan/Parts">Parts</a></li>        </ul>      </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu2" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="">Device</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu2">          <li><a href="/Team:NCKU_Tainan/Hardware">Hardware</a></li>          <li><a href="/Team:NCKU_Tainan/Software">Software</a></li>          <li><a href="/Team:NCKU_Tainan/Demonstrate">Demonstrate</a></li>        </ul>      </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu3" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="">Judging</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu3">          <li><a href="/Team:NCKU_Tainan/Medal">Medal</a></li>          <li><a href="/Team:NCKU_Tainan/Safety">Safety</a></li>        </ul>        </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu4" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="/Team:NCKU_Tainan/Team">Team</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu4">          <li><a href="/Team:NCKU_Tainan/Team">Team</a></li>          <li><a href="/Team:NCKU_Tainan/Attributions">Attributions</a></li>          <li><a href="/Team:NCKU_Tainan/Acknowledgement">Acknowledgement</a></li>          <li><a href="/Team:NCKU_Tainan/Collaborations">Collaborations</a></li>        </ul>        </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu5" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="/Team:NCKU_Tainan/Human_Practices">Human Practices</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu5">          <li><a href="/Team:NCKU_Tainan/Human_Practices">Overview</a></li>          <li><a href="/Team:NCKU_Tainan/Integrated_Practices">Integrated Practices</a></li>          <li><a href="/Team:NCKU_Tainan/Engagement">Engagement</a></li>        </ul>      </li>      <li>        <a class="dropdown-toggle" type="button" id="dropdownMenu6" data-toggle="dropdown" aria-haspopup="true" aria-expa="" nded="true" href="">Notebook</a><div class="nav-underline"></div>        <ul class="dropdown-menu" aria-labelledby="dropdownMenu6">          <li><a href="/Team:NCKU_Tainan/Notebook_Construction">Construction</a></li>          <li><a href="/Team:NCKU_Tainan/Notebook_Functional_Test">Functional Test</a></li>          <li><a href="/Team:NCKU_Tainan/Notebook_Device_Design">Device Design</a></li>          <li><a href="/Team:NCKU_Tainan/Notebook_Protocols">Protocols</a></li>          <li><a href="/Team:NCKU_Tainan/Notebook_Model">Model</a></li>        </ul>      </li>    </ul>    <ul class="nav navbar-nav navbar-right">    </ul>  </div><!--/.nav-collapse --></div><!--/.container-fluid --></nav><div id="container-big"><div id="iGEMbar"></div><div id="line-left"></div><div id="line-left2"></div><div id="line-right"></div><div id="photo-left"></div></div><!--/.container-big -->        <style>
             #photo-left { background-image: url("/wiki/images/c/c1/T--NCKU_Tainan--sample2.jpg"); }
+
             #photo-left { background-image: url("/wiki/images/4/40/T--NCKU_Tainan--Model.png"); }
 
         </style>
 
         </style>
 
         <div class="container-fluid" style="margin-top:100px">
 
         <div class="container-fluid" style="margin-top:100px">
Line 12: Line 12:
 
                         <div class="head2">Model</div>
 
                         <div class="head2">Model</div>
 
                         <div class="title-line" id="fitting">Fitting Theory</div>
 
                         <div class="title-line" id="fitting">Fitting Theory</div>
             <p>To detect the concentration of inputted numerically, a dependable formula for transformation is absolutely needed. Pl is a glucose induced promoter but with complicated regulation pathway. In this section, we derive a formula using quasi-steady state with the method of enzyme kinetics.</p>
+
             <p>To analyze the data obtained from U. coli, we adopted two methods  to estimate the glucose concentration efficiently and accurately. With the statistical method, the glucose can be differentiated from the user's urine in 2 hours. On the the hand, the theory-dependent fitting method is used to numerically  analyze the urine glucose concentration in 6 hours.</p>
 
             <p>When all compounds reach its steady concentration, the production rate of protein should be a constant and be in form as the following equation:</p>
 
             <p>When all compounds reach its steady concentration, the production rate of protein should be a constant and be in form as the following equation:</p>
 
                         <p>$$\frac{[Protein]}{dt}=\frac{c1[Glucose]+c2}{[Glucose]+c3}$$</p>
 
                         <p>$$\frac{[Protein]}{dt}=\frac{c1[Glucose]+c2}{[Glucose]+c3}$$</p>
 
                         <p>And the fitting result also show its accuracy and limitation:</p>
 
                         <p>And the fitting result also show its accuracy and limitation:</p>
                 <img src="/wiki/images/3/36/T--NCKU_Tainan--project-modeling-fitting-image5.jpg">
+
                 <img src="/wiki/images/8/89/T--NCKU_Tainan--project-modeling-fitting-image5.png">
 
                         <p>(<a href="/Team:NCKU_Tainan/Model_Fitting_Theory">Read more...</a>)</p>
 
                         <p>(<a href="/Team:NCKU_Tainan/Model_Fitting_Theory">Read more...</a>)</p>
  
 
                         <div class="title-line" id="statistics">Statistics Analysis</div>
 
                         <div class="title-line" id="statistics">Statistics Analysis</div>
                   <p>In medicine, the blood glucose exceeding 5mM/L implies having diabetes, and it exceeding 120mM/L implies being a severe patient. Finding the person whose glucose concentration is over 5mM/L or 120mM/L is our target.</p>
+
                   <p>In medicine, when the presence of urine glucose exceeds 5mM/L, it implies pre-diabetes or diabetes. However, we refer to people whose urine glucose exceeds 120mM/L as sever diabetic patients. Consequently, finding the person whose urine glucose concentration is over 5mM/L or 120mM/L is our target for prevention and early detection.</p>
 
                         <div class="img" style="width:32%;display:inline-block;margin-left:8px">
 
                         <div class="img" style="width:32%;display:inline-block;margin-left:8px">
 
                 <img src="/wiki/images/c/c0/T--NCKU_Tainan--project-modeling-statistic-image1.jpg">
 
                 <img src="/wiki/images/c/c0/T--NCKU_Tainan--project-modeling-statistic-image1.jpg">
               <div>0.1 vs 5 mM/L</div>
+
               <div>0.1 vs 5 mM</div>
 
                         </div>
 
                         </div>
 
                         <div class="img" style="width:32%;display:inline-block">
 
                         <div class="img" style="width:32%;display:inline-block">
 
                 <img src="/wiki/images/0/04/T--NCKU_Tainan--project-modeling-statistic-image2.jpg">
 
                 <img src="/wiki/images/0/04/T--NCKU_Tainan--project-modeling-statistic-image2.jpg">
               <div>0.1 vs 120 mM/L</div>
+
               <div>0.1 vs 120 mM</div>
 
             </div>
 
             </div>
 
                         <div class="img" style="width:32%;display:inline-block">
 
                         <div class="img" style="width:32%;display:inline-block">
Line 33: Line 33:
 
               <div>0.1 model plot</div>
 
               <div>0.1 model plot</div>
 
             </div>
 
             </div>
                   <p>First, we prove that there has difference between 0.1mM/L and 5mM/L (120mM/L) in the paired-difference T test part. And, we use the regression and prediction intervals to distinguish exceeding 120mM/L and 5mM/L from exceeding 0.1mM/L. From the result, 5mM/L can be distinguished from 0.1mM/L after 101 minutes, and 120mM/L can be distinguished from 0.1mM/L after 88 minutes.</p>
+
                   <p>First, we prove that there is a difference between 0.1mM/L and 5mM/L (120mM/L) in the paired-difference T test part. And, we use the regression and prediction intervals to distinguish exceeding 120mM/L and 5mM/L from exceeding 0.1mM/L. From the result, 5mM/L can be distinguished from 0.1mM/L after 101 minutes, and 120mM/L can be distinguished from 0.1mM/L after 88 minutes.</p>
 
                          
 
                          
 
                         <p>(<a href="/Team:NCKU_Tainan/Model_Statistics_Analysis">Read more...</a>)</p>
 
                         <p>(<a href="/Team:NCKU_Tainan/Model_Statistics_Analysis">Read more...</a>)</p>

Revision as of 01:23, 18 October 2016

Project Modeling - iGEM NCKU

PROJECT / Model
Model
Fitting Theory

To analyze the data obtained from U. coli, we adopted two methods to estimate the glucose concentration efficiently and accurately. With the statistical method, the glucose can be differentiated from the user's urine in 2 hours. On the the hand, the theory-dependent fitting method is used to numerically analyze the urine glucose concentration in 6 hours.

When all compounds reach its steady concentration, the production rate of protein should be a constant and be in form as the following equation:

$$\frac{[Protein]}{dt}=\frac{c1[Glucose]+c2}{[Glucose]+c3}$$

And the fitting result also show its accuracy and limitation:

(Read more...)

Statistics Analysis

In medicine, when the presence of urine glucose exceeds 5mM/L, it implies pre-diabetes or diabetes. However, we refer to people whose urine glucose exceeds 120mM/L as sever diabetic patients. Consequently, finding the person whose urine glucose concentration is over 5mM/L or 120mM/L is our target for prevention and early detection.

0.1 vs 5 mM
0.1 vs 120 mM
0.1 model plot

First, we prove that there is a difference between 0.1mM/L and 5mM/L (120mM/L) in the paired-difference T test part. And, we use the regression and prediction intervals to distinguish exceeding 120mM/L and 5mM/L from exceeding 0.1mM/L. From the result, 5mM/L can be distinguished from 0.1mM/L after 101 minutes, and 120mM/L can be distinguished from 0.1mM/L after 88 minutes.

(Read more...)